Wall clock time and date at job start Tue Mar 31 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 120.00255 * 2 1 4 4 H 1.48505 * 109.47054 * 270.00126 * 3 2 1 5 5 H 1.48502 * 109.47026 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.47177 * 150.00187 * 3 2 1 7 7 C 1.38653 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99765 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.35753 * 117.00188 * 185.05796 * 9 7 2 11 11 C 1.38871 * 120.06924 * 174.19172 * 10 9 7 12 12 C 1.38102 * 119.92996 * 179.72319 * 11 10 9 13 13 C 1.38304 * 120.06838 * 0.52926 * 12 11 10 14 14 C 1.50701 * 119.92720 * 179.74503 * 13 12 11 15 15 N 1.46902 * 109.46904 * 270.01858 * 14 13 12 16 16 C 1.46899 * 110.99393 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47020 * 180.02562 * 16 15 14 18 18 C 1.38232 * 119.99902 * 269.72829 * 17 16 15 19 19 C 1.38239 * 120.00093 * 179.76564 * 18 17 16 20 20 C 1.38232 * 119.99785 * 0.50361 * 19 18 17 21 21 C 1.38239 * 120.00006 * 359.74835 * 20 19 18 22 22 C 1.38232 * 120.00113 * 89.99755 * 17 16 15 23 23 C 1.38294 * 120.13635 * 359.76889 * 13 12 11 24 24 C 1.38106 * 120.07260 * 359.95382 * 23 13 12 25 25 H 0.97002 * 119.99567 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.03616 * 359.97438 * 11 10 9 27 27 H 1.08005 * 119.96554 * 180.27602 * 12 11 10 28 28 H 1.08994 * 109.47248 * 30.02272 * 14 13 12 29 29 H 1.08999 * 109.46742 * 150.02527 * 14 13 12 30 30 H 1.00894 * 111.00054 * 303.95437 * 15 14 13 31 31 H 1.09004 * 109.47315 * 299.99473 * 16 15 14 32 32 H 1.09002 * 109.47677 * 60.00332 * 16 15 14 33 33 H 1.07999 * 120.00301 * 359.97438 * 18 17 16 34 34 H 1.07998 * 120.00159 * 180.23450 * 19 18 17 35 35 H 1.07998 * 120.00321 * 179.73209 * 20 19 18 36 36 H 1.08001 * 120.00136 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.00090 * 0.02562 * 22 17 16 38 38 H 1.08001 * 119.96523 * 179.97438 * 23 13 12 39 39 H 1.07996 * 120.03520 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3571 -1.2009 0.0011 10 6 3.9734 -2.4058 -0.1051 11 6 5.3547 -2.4720 -0.2325 12 6 5.9792 -3.6995 -0.3345 13 6 5.2296 -4.8616 -0.3209 14 6 5.9139 -6.1992 -0.4382 15 7 6.0181 -6.5732 -1.8549 16 6 6.6810 -7.8752 -2.0081 17 6 6.7702 -8.2244 -3.4714 18 6 5.7517 -8.9379 -4.0750 19 6 5.8312 -9.2541 -5.4184 20 6 6.9341 -8.8657 -6.1557 21 6 7.9551 -8.1566 -5.5509 22 6 7.8731 -7.8359 -4.2088 23 6 3.8533 -4.7987 -0.2003 24 6 3.2233 -3.5745 -0.0922 25 1 -0.4849 0.8401 0.0004 26 1 5.9403 -1.5646 -0.2477 27 1 7.0539 -3.7518 -0.4291 28 1 6.9119 -6.1360 -0.0046 29 1 5.3333 -6.9522 0.0946 30 1 5.1107 -6.5758 -2.2960 31 1 7.6845 -7.8240 -1.5854 32 1 6.1055 -8.6397 -1.4862 33 1 4.8923 -9.2456 -3.4979 34 1 5.0338 -9.8083 -5.8909 35 1 6.9983 -9.1164 -7.2043 36 1 8.8169 -7.8534 -6.1269 37 1 8.6711 -7.2825 -3.7361 38 1 3.2706 -5.7080 -0.1904 39 1 2.1486 -3.5261 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034990823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:20 Heat of formation + Delta-G solvation = 21.315977 kcal Electronic energy + Delta-G solvation = -20183.392089 eV Core-core repulsion = 17056.239467 eV Total energy + Delta-G solvation = -3127.152622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.49726 -39.16863 -37.21450 -35.52341 -32.47575 -31.86574 -31.04512 -30.24648 -29.40116 -26.19376 -25.01059 -23.41304 -22.71974 -22.04713 -21.27815 -20.35835 -17.89949 -17.36267 -16.99084 -15.95318 -15.49024 -14.99267 -14.91426 -14.70574 -14.49656 -13.93717 -13.75573 -13.67603 -13.52726 -13.15487 -12.76217 -12.65880 -12.50277 -12.31215 -12.14286 -11.74994 -11.37158 -11.18311 -11.11817 -10.76359 -10.70363 -10.63188 -10.15276 -9.38750 -9.07972 -8.99282 -8.85540 -8.39687 -8.24036 -7.32044 -6.42072 -4.08683 1.16655 1.25380 2.14098 2.19223 3.22105 3.26026 3.40582 3.59510 4.23719 4.29196 4.61498 4.64657 4.75274 4.84981 4.87026 4.95335 5.10614 5.13367 5.27295 5.34297 5.37620 5.46739 5.52204 5.67551 5.75444 5.83043 5.84448 5.89010 6.13163 6.28598 6.34643 6.34974 6.47206 6.58089 6.79105 6.83057 6.95317 7.09168 7.24939 7.28426 7.41800 7.61882 7.79817 8.03724 8.93354 9.55955 10.65626 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.002804 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.929355 B = 9982.632753 C =10203.092696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.194 4.194 12 C -0.053 4.053 13 C -0.177 4.177 14 C 0.116 3.884 15 N -0.680 5.680 16 C 0.096 3.904 17 C -0.079 4.079 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.067 4.067 24 C -0.222 4.222 25 H 0.279 0.721 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.344 0.656 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -17.040 -6.782 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.213 4.213 12 C -0.072 4.072 13 C -0.178 4.178 14 C -0.012 4.012 15 N -0.311 5.311 16 C -0.033 4.033 17 C -0.080 4.080 18 C -0.134 4.134 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.086 4.086 24 C -0.241 4.241 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.128 -16.309 -6.832 22.633 hybrid contribution -0.711 0.091 0.195 0.743 sum 13.417 -16.218 -6.637 22.070 Atomic orbital electron populations 1.69648 1.05584 1.28497 1.48080 1.24469 0.95027 0.98851 0.95658 0.86177 0.80325 0.81391 0.78990 1.19855 1.20793 1.18344 1.20769 0.76913 0.96622 1.52212 0.87655 1.83575 1.22598 1.25796 1.80275 1.19142 0.91740 0.85466 0.92709 1.20224 0.91954 0.97931 1.11223 1.20469 0.98466 0.91088 0.97205 1.19171 0.93352 0.93899 1.11383 1.20659 0.99408 0.93424 0.87695 1.60628 1.27397 1.28031 1.15061 1.20905 1.00214 0.90482 0.91711 1.19831 0.94701 0.97626 0.95830 1.21076 0.98297 0.98859 0.95122 1.21115 0.98184 1.00436 0.94243 1.21147 0.94348 0.98905 0.99760 1.21167 0.98968 0.98879 0.95065 1.21050 0.97946 0.98639 0.93989 1.20643 0.93496 0.96637 0.97803 1.21236 1.01052 0.91847 1.09945 0.91049 0.86557 0.86861 0.90977 0.95250 0.83784 0.90296 0.94617 0.86346 0.86205 0.86306 0.86161 0.85928 0.87656 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.96 55.48 0.77 -24.74 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.77 28.62 -169.99 -4.86 16.90 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.39 -11.02 9.95 30.89 0.31 -10.72 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 9 O -0.22 -5.78 8.59 0.04 0.00 -5.77 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.19 -3.87 9.99 -39.40 -0.39 -4.27 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.18 -2.88 5.40 -104.58 -0.56 -3.45 16 14 C 0.12 1.49 5.81 -4.97 -0.03 1.46 16 15 N -0.68 -8.36 6.48 -116.33 -0.75 -9.11 16 16 C 0.10 0.96 5.81 -4.97 -0.03 0.93 16 17 C -0.08 -0.83 5.39 -104.62 -0.56 -1.39 16 18 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 19 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 22 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 23 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 24 C -0.22 -4.77 9.17 -39.39 -0.36 -5.13 16 25 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.34 4.40 8.71 -39.29 -0.34 4.06 16 31 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -29.79 336.45 -9.61 -39.40 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.12 Total: 5.95 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -4.72 Total: -27.70 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.02 Total: -33.84 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.77 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.79 -9.61 -39.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.717 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds