Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 120.00255 * 2 1 4 4 H 1.48505 * 109.47054 * 270.00126 * 3 2 1 5 5 H 1.48502 * 109.47026 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.47177 * 150.00187 * 3 2 1 7 7 C 1.38653 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99765 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.35753 * 117.00188 * 185.05796 * 9 7 2 11 11 C 1.38871 * 120.06924 * 174.19172 * 10 9 7 12 12 C 1.38102 * 119.92996 * 179.72319 * 11 10 9 13 13 C 1.38304 * 120.06838 * 0.52926 * 12 11 10 14 14 C 1.50701 * 119.92720 * 179.74503 * 13 12 11 15 15 N 1.46902 * 109.46904 * 270.01858 * 14 13 12 16 16 C 1.46899 * 110.99393 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47020 * 180.02562 * 16 15 14 18 18 C 1.38232 * 119.99902 * 269.72829 * 17 16 15 19 19 C 1.38239 * 120.00093 * 179.76564 * 18 17 16 20 20 C 1.38232 * 119.99785 * 0.50361 * 19 18 17 21 21 C 1.38239 * 120.00006 * 359.74835 * 20 19 18 22 22 C 1.38232 * 120.00113 * 89.99755 * 17 16 15 23 23 C 1.38294 * 120.13635 * 359.76889 * 13 12 11 24 24 C 1.38106 * 120.07260 * 359.95382 * 23 13 12 25 25 H 0.97002 * 119.99567 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.03616 * 359.97438 * 11 10 9 27 27 H 1.08005 * 119.96554 * 180.27602 * 12 11 10 28 28 H 1.08994 * 109.47248 * 30.02272 * 14 13 12 29 29 H 1.08999 * 109.46742 * 150.02527 * 14 13 12 30 30 H 1.00894 * 111.00054 * 303.95437 * 15 14 13 31 31 H 1.09004 * 109.47315 * 299.99473 * 16 15 14 32 32 H 1.09002 * 109.47677 * 60.00332 * 16 15 14 33 33 H 1.07999 * 120.00301 * 359.97438 * 18 17 16 34 34 H 1.07998 * 120.00159 * 180.23450 * 19 18 17 35 35 H 1.07998 * 120.00321 * 179.73209 * 20 19 18 36 36 H 1.08001 * 120.00136 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.00090 * 0.02562 * 22 17 16 38 38 H 1.08001 * 119.96523 * 179.97438 * 23 13 12 39 39 H 1.07996 * 120.03520 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3571 -1.2009 0.0011 10 6 3.9734 -2.4058 -0.1051 11 6 5.3547 -2.4720 -0.2325 12 6 5.9792 -3.6995 -0.3345 13 6 5.2296 -4.8616 -0.3209 14 6 5.9139 -6.1992 -0.4382 15 7 6.0181 -6.5732 -1.8549 16 6 6.6810 -7.8752 -2.0081 17 6 6.7702 -8.2244 -3.4714 18 6 5.7517 -8.9379 -4.0750 19 6 5.8312 -9.2541 -5.4184 20 6 6.9341 -8.8657 -6.1557 21 6 7.9551 -8.1566 -5.5509 22 6 7.8731 -7.8359 -4.2088 23 6 3.8533 -4.7987 -0.2003 24 6 3.2233 -3.5745 -0.0922 25 1 -0.4849 0.8401 0.0004 26 1 5.9403 -1.5646 -0.2477 27 1 7.0539 -3.7518 -0.4291 28 1 6.9119 -6.1360 -0.0046 29 1 5.3333 -6.9522 0.0946 30 1 5.1107 -6.5758 -2.2960 31 1 7.6845 -7.8240 -1.5854 32 1 6.1055 -8.6397 -1.4862 33 1 4.8923 -9.2456 -3.4979 34 1 5.0338 -9.8083 -5.8909 35 1 6.9983 -9.1164 -7.2043 36 1 8.8169 -7.8534 -6.1269 37 1 8.6711 -7.2825 -3.7361 38 1 3.2706 -5.7080 -0.1904 39 1 2.1486 -3.5261 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034990823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = 4.452206 kcal Electronic energy + Delta-G solvation = -20184.123357 eV Core-core repulsion = 17056.239467 eV Total energy + Delta-G solvation = -3127.883890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90761 -40.13956 -38.73410 -36.62449 -34.47391 -32.90252 -31.80260 -31.72321 -30.65919 -27.71034 -26.44210 -24.54239 -23.64839 -23.40980 -22.05222 -21.80468 -19.82237 -19.11574 -17.80623 -16.95979 -16.54446 -16.41096 -15.98401 -15.85418 -15.73352 -15.49810 -15.36818 -15.10663 -14.43823 -14.24015 -14.16863 -14.03574 -13.94196 -13.51285 -13.14900 -12.99458 -12.81685 -12.47406 -12.43121 -12.16815 -11.95359 -11.81675 -11.72804 -11.27205 -10.90708 -9.79999 -9.77751 -9.71331 -9.29801 -8.97154 -8.50609 -6.23129 0.43327 0.55470 0.58529 0.66386 1.31094 1.35352 1.51855 2.27918 2.71879 2.88580 3.05239 3.17182 3.62204 3.89520 3.99568 4.06117 4.07575 4.20193 4.21222 4.32755 4.43445 4.51180 4.60144 4.66541 4.72619 4.75259 4.83100 4.85288 5.01290 5.16952 5.21453 5.27348 5.37512 5.58326 5.60220 5.66896 5.75227 5.76634 5.81690 5.91288 6.06752 6.18388 6.26911 6.41682 6.83963 7.58897 8.61152 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.002804 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.929355 B = 9982.632753 C =10203.092696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.120 3.880 11 C -0.194 4.194 12 C -0.049 4.049 13 C -0.150 4.150 14 C 0.120 3.880 15 N -0.688 5.688 16 C 0.101 3.899 17 C -0.094 4.094 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.112 4.112 23 C -0.067 4.067 24 C -0.238 4.238 25 H 0.285 0.715 26 H 0.127 0.873 27 H 0.151 0.849 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.340 0.660 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.489 -18.610 -7.356 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.071 3.929 11 C -0.213 4.213 12 C -0.067 4.067 13 C -0.151 4.151 14 C -0.008 4.008 15 N -0.319 5.319 16 C -0.027 4.027 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.131 4.131 23 C -0.085 4.085 24 C -0.257 4.257 25 H 0.094 0.906 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.974 -17.926 -7.408 25.775 hybrid contribution -1.384 0.214 0.300 1.432 sum 15.590 -17.712 -7.108 24.643 Atomic orbital electron populations 1.69732 1.06918 1.29601 1.50276 1.25286 0.95886 1.02184 0.95529 0.85211 0.78802 0.77377 0.79284 1.19101 1.19135 1.18691 1.20710 0.78158 0.96101 1.52598 0.90212 1.83516 1.21186 1.27524 1.83142 1.19693 0.93240 0.85074 0.94939 1.20540 0.90578 0.99859 1.10349 1.20925 1.00361 0.89987 0.95442 1.19679 0.92667 0.95814 1.06945 1.20674 1.00242 0.91323 0.88572 1.60583 1.27277 1.29758 1.14328 1.20900 1.00518 0.89506 0.91787 1.19948 0.95098 0.98240 0.96128 1.21292 0.98607 0.99015 0.95659 1.21415 0.98836 1.00481 0.94272 1.21471 0.94116 0.98468 1.00840 1.21458 0.99713 0.98731 0.95101 1.21257 0.98240 0.99025 0.94544 1.20933 0.94690 0.96056 0.96865 1.21253 1.00080 0.93276 1.11140 0.90568 0.85498 0.83154 0.89029 0.93705 0.84273 0.89367 0.93598 0.85501 0.84610 0.84398 0.84483 0.85324 0.84949 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.84 13.96 21.61 0.30 -55.54 16 2 C 0.01 0.55 5.49 84.83 0.47 1.01 16 3 Si 0.97 45.99 28.62 68.60 1.96 47.95 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.40 -23.89 9.95 67.92 0.68 -23.21 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 9 O -0.25 -13.59 8.59 -22.78 -0.20 -13.79 16 10 C 0.12 5.67 6.65 22.58 0.15 5.82 16 11 C -0.19 -7.52 9.99 22.39 0.22 -7.29 16 12 C -0.05 -1.51 9.69 22.25 0.22 -1.29 16 13 C -0.15 -4.40 5.40 -19.84 -0.11 -4.50 16 14 C 0.12 2.53 5.81 85.56 0.50 3.03 16 15 N -0.69 -14.45 6.48 -521.97 -3.38 -17.83 16 16 C 0.10 1.70 5.81 85.56 0.50 2.20 16 17 C -0.09 -1.73 5.39 -19.87 -0.11 -1.84 16 18 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 19 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 20 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 21 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 22 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 23 C -0.07 -2.28 9.69 22.25 0.22 -2.07 16 24 C -0.24 -10.55 9.17 22.39 0.21 -10.35 16 25 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 27 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 28 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 29 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.34 7.69 8.71 -89.70 -0.78 6.91 16 31 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 33 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.11 5.19 5.64 -2.91 -0.02 5.18 16 Total: -1.00 -67.33 336.45 2.99 -64.33 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.27 Total: 22.95 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 4.04 Total: -48.08 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -3.08 Total: -73.37 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.20 Total: -13.79 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.96 Total: 47.95 kcal Total: -67.33 2.99 -64.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.786 kcal (2) G-P(sol) polarization free energy of solvation -67.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds