Wall clock time and date at job start Tue Mar 31 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 119.99955 * 2 1 4 4 C 1.38212 * 120.00337 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00003 * 359.94714 * 4 3 2 6 6 C 1.38215 * 119.99622 * 0.05272 * 5 4 3 7 7 C 1.38214 * 120.00258 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00086 * 359.97438 * 7 2 1 9 9 N 1.46495 * 109.47158 * 80.02560 * 8 7 2 10 10 C 1.39665 * 120.00368 * 180.02562 * 9 8 7 11 11 C 1.39001 * 120.03879 * 359.72478 * 10 9 8 12 12 C 1.38155 * 120.06178 * 179.70178 * 11 10 9 13 13 C 1.38166 * 120.14197 * 0.59637 * 12 11 10 14 14 C 1.38914 * 120.08109 * 359.68132 * 13 12 11 15 15 O 1.35751 * 120.03242 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99940 * 174.48328 * 15 14 13 17 17 H 1.08004 * 119.99786 * 5.05509 * 16 15 14 18 18 C 1.38646 * 120.00149 * 185.05706 * 16 15 14 19 19 N 1.31564 * 120.00024 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00200 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46687 * 60.00366 * 20 18 16 22 22 H 1.48502 * 109.46881 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47070 * 300.00033 * 20 18 16 24 24 C 1.38758 * 120.04411 * 180.02562 * 10 9 8 25 25 H 1.08995 * 109.47437 * 270.02050 * 1 2 3 26 26 H 1.09001 * 109.47065 * 30.02459 * 1 2 3 27 27 H 1.09002 * 109.46610 * 150.02058 * 1 2 3 28 28 H 1.08008 * 119.99981 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.99925 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.00194 * 180.32881 * 5 4 3 31 31 H 1.08003 * 119.99525 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47437 * 200.02746 * 8 7 2 33 33 H 1.09004 * 109.47123 * 320.03105 * 8 7 2 34 34 H 0.97005 * 120.00003 * 359.97438 * 9 8 7 35 35 H 1.08002 * 119.97046 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.92537 * 180.27902 * 12 11 10 37 37 H 1.08005 * 119.96367 * 179.70495 * 13 12 11 38 38 H 0.96998 * 120.00148 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.06569 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 3.5807 -1.1969 0.0000 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5021 0.0017 9 7 0.9928 -2.8063 -1.3582 10 6 0.2675 -3.9733 -1.6085 11 6 -0.0212 -4.8496 -0.5688 12 6 -0.7440 -6.0010 -0.8147 13 6 -1.1714 -6.2915 -2.0961 14 6 -0.8812 -5.4228 -3.1406 15 8 -1.3012 -5.7095 -4.3993 16 6 -1.0868 -4.7721 -5.3445 17 1 -0.5285 -3.8797 -5.1030 18 6 -1.5828 -4.9540 -6.6263 19 7 -2.2633 -6.0409 -6.9203 20 14 -1.2863 -3.6550 -7.9357 21 1 0.1745 -3.4805 -8.1378 22 1 -1.9151 -4.0847 -9.2105 23 1 -1.8831 -2.3672 -7.4994 24 6 -0.1604 -4.2625 -2.8963 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6582 2.1327 -0.0004 29 1 4.1203 2.1328 -0.0010 30 1 5.3517 0.0001 0.0050 31 1 4.1208 -2.1321 0.0001 32 1 2.0993 -3.2993 0.3539 33 1 0.5812 -2.4225 0.6622 34 1 1.1968 -2.1968 -2.0848 35 1 0.3160 -4.6279 0.4330 36 1 -0.9709 -6.6781 -0.0045 37 1 -1.7322 -7.1948 -2.2859 38 1 -2.6107 -6.1680 -7.8169 39 1 0.0664 -3.5856 -3.7067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:14 Heat of formation + Delta-G solvation = 20.342074 kcal Electronic energy + Delta-G solvation = -20829.412394 eV Core-core repulsion = 17702.217541 eV Total energy + Delta-G solvation = -3127.194853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86325 -38.90669 -36.95458 -34.85021 -32.85608 -32.18724 -31.61342 -29.15176 -28.16929 -27.09252 -25.32817 -25.16696 -22.30732 -21.69721 -21.07493 -20.28724 -17.85117 -17.43590 -16.52775 -15.84120 -15.63794 -15.11787 -14.87678 -14.65360 -14.19651 -13.77037 -13.69306 -13.58786 -13.32612 -13.19678 -12.92843 -12.71367 -12.32331 -12.23616 -12.11722 -11.60147 -11.44092 -11.14004 -11.01438 -10.88207 -10.76534 -10.58747 -10.37593 -9.39132 -9.35278 -9.02487 -8.79202 -8.72647 -7.31539 -6.74453 -6.37964 -3.97237 1.09841 1.20784 2.41591 2.60531 3.16293 3.17967 3.20029 3.45968 4.01640 4.07631 4.58109 4.64095 4.74270 4.78282 4.85740 5.16406 5.17413 5.21625 5.40098 5.48071 5.52289 5.56898 5.61817 5.72256 5.73916 5.88917 6.02342 6.08197 6.29444 6.30918 6.31465 6.39824 6.50488 6.66765 6.69174 6.82301 7.07272 7.18441 7.42302 7.52501 7.70304 8.04798 8.08392 8.23821 9.08177 9.80981 10.80406 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.004021 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.787899 B = 6961.731511 C = 8133.010668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.131 4.131 6 C -0.098 4.098 7 C -0.103 4.103 8 C 0.173 3.827 9 N -0.749 5.749 10 C 0.249 3.751 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.237 4.237 14 C 0.190 3.810 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.301 4.301 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.269 0.731 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 12.484 14.170 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.149 4.149 6 C -0.116 4.116 7 C -0.104 4.104 8 C 0.049 3.951 9 N -0.381 5.381 10 C 0.148 3.852 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.135 3.865 15 O -0.082 6.082 16 C -0.466 4.466 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.325 4.325 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.067 12.164 14.055 20.681 hybrid contribution 0.394 1.032 -0.926 1.441 sum 9.461 13.195 13.129 20.881 Atomic orbital electron populations 1.20933 0.90908 1.03795 1.02527 1.19877 0.96306 0.92470 0.97858 1.21053 0.94280 0.97498 1.01554 1.21156 0.94328 0.98052 0.99649 1.21122 0.99868 0.92490 1.01392 1.21119 0.93499 0.98350 0.98646 1.19861 0.93776 0.94501 1.02240 1.20023 0.97074 0.92345 0.85707 1.44546 1.61855 1.23695 1.08014 1.17463 0.89342 0.85331 0.93054 1.20068 1.13772 0.99254 0.97172 1.20372 0.95044 0.95293 0.95179 1.20039 1.11537 1.02679 0.91462 1.19063 0.90064 0.91443 0.85914 1.83987 1.69815 1.41589 1.12777 1.21250 1.35787 1.00513 0.89005 0.89265 1.25254 0.96049 0.97769 0.97420 1.70033 1.33527 1.25439 1.21068 0.85822 0.78814 0.79719 0.79295 1.19610 1.20309 1.19608 1.20499 1.13480 1.02989 0.95564 0.91089 0.91547 0.90138 0.86074 0.86177 0.86090 0.85841 0.92049 0.91745 0.77069 0.87887 0.87229 0.86945 0.92088 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.26 36.00 0.33 -0.95 16 2 C -0.06 -0.70 5.88 -104.63 -0.62 -1.32 16 3 C -0.13 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 5 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.10 -1.03 9.67 -39.58 -0.38 -1.41 16 7 C -0.10 -1.18 5.25 -104.62 -0.55 -1.73 16 8 C 0.17 2.14 4.16 -5.20 -0.02 2.12 16 9 N -0.75 -11.34 5.06 -59.83 -0.30 -11.64 16 10 C 0.25 4.69 6.65 -83.81 -0.56 4.13 16 11 C -0.28 -5.00 9.31 -39.33 -0.37 -5.37 16 12 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 13 C -0.24 -5.21 9.99 -39.36 -0.39 -5.60 16 14 C 0.19 4.73 6.64 -39.14 -0.26 4.47 16 15 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 16 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.87 -25.82 13.67 55.48 0.76 -25.06 16 20 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.30 -6.74 9.01 -39.20 -0.35 -7.09 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.08 0.96 6.35 -51.93 -0.33 0.63 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 29 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.17 8.04 -52.48 -0.42 0.75 16 32 H 0.06 0.74 7.80 -51.93 -0.41 0.34 16 33 H 0.06 0.78 7.10 -51.93 -0.37 0.41 16 34 H 0.40 5.88 8.47 -40.82 -0.35 5.53 16 35 H 0.10 1.58 6.73 -52.49 -0.35 1.23 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.79 5.64 -52.49 -0.30 2.49 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -31.38 330.14 -9.02 -40.41 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.88 Total: 9.06 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -4.55 Total: -28.39 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.46 Total: -36.71 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.38 -9.02 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.748 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds