Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 119.99955 * 2 1 4 4 C 1.38212 * 120.00337 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00003 * 359.94714 * 4 3 2 6 6 C 1.38215 * 119.99622 * 0.05272 * 5 4 3 7 7 C 1.38214 * 120.00258 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00086 * 359.97438 * 7 2 1 9 9 N 1.46495 * 109.47158 * 80.02560 * 8 7 2 10 10 C 1.39665 * 120.00368 * 180.02562 * 9 8 7 11 11 C 1.39001 * 120.03879 * 359.72478 * 10 9 8 12 12 C 1.38155 * 120.06178 * 179.70178 * 11 10 9 13 13 C 1.38166 * 120.14197 * 0.59637 * 12 11 10 14 14 C 1.38914 * 120.08109 * 359.68132 * 13 12 11 15 15 O 1.35751 * 120.03242 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99940 * 174.48328 * 15 14 13 17 17 H 1.08004 * 119.99786 * 5.05509 * 16 15 14 18 18 C 1.38646 * 120.00149 * 185.05706 * 16 15 14 19 19 N 1.31564 * 120.00024 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00200 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46687 * 60.00366 * 20 18 16 22 22 H 1.48502 * 109.46881 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47070 * 300.00033 * 20 18 16 24 24 C 1.38758 * 120.04411 * 180.02562 * 10 9 8 25 25 H 1.08995 * 109.47437 * 270.02050 * 1 2 3 26 26 H 1.09001 * 109.47065 * 30.02459 * 1 2 3 27 27 H 1.09002 * 109.46610 * 150.02058 * 1 2 3 28 28 H 1.08008 * 119.99981 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.99925 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.00194 * 180.32881 * 5 4 3 31 31 H 1.08003 * 119.99525 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47437 * 200.02746 * 8 7 2 33 33 H 1.09004 * 109.47123 * 320.03105 * 8 7 2 34 34 H 0.97005 * 120.00003 * 359.97438 * 9 8 7 35 35 H 1.08002 * 119.97046 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.92537 * 180.27902 * 12 11 10 37 37 H 1.08005 * 119.96367 * 179.70495 * 13 12 11 38 38 H 0.96998 * 120.00148 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.06569 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 3.5807 -1.1969 0.0000 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5021 0.0017 9 7 0.9928 -2.8063 -1.3582 10 6 0.2675 -3.9733 -1.6085 11 6 -0.0212 -4.8496 -0.5688 12 6 -0.7440 -6.0010 -0.8147 13 6 -1.1714 -6.2915 -2.0961 14 6 -0.8812 -5.4228 -3.1406 15 8 -1.3012 -5.7095 -4.3993 16 6 -1.0868 -4.7721 -5.3445 17 1 -0.5285 -3.8797 -5.1030 18 6 -1.5828 -4.9540 -6.6263 19 7 -2.2633 -6.0409 -6.9203 20 14 -1.2863 -3.6550 -7.9357 21 1 0.1745 -3.4805 -8.1378 22 1 -1.9151 -4.0847 -9.2105 23 1 -1.8831 -2.3672 -7.4994 24 6 -0.1604 -4.2625 -2.8963 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6582 2.1327 -0.0004 29 1 4.1203 2.1328 -0.0010 30 1 5.3517 0.0001 0.0050 31 1 4.1208 -2.1321 0.0001 32 1 2.0993 -3.2993 0.3539 33 1 0.5812 -2.4225 0.6622 34 1 1.1968 -2.1968 -2.0848 35 1 0.3160 -4.6279 0.4330 36 1 -0.9709 -6.6781 -0.0045 37 1 -1.7322 -7.1948 -2.2859 38 1 -2.6107 -6.1680 -7.8169 39 1 0.0664 -3.5856 -3.7067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = 2.613539 kcal Electronic energy + Delta-G solvation = -20830.181161 eV Core-core repulsion = 17702.217541 eV Total energy + Delta-G solvation = -3127.963620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91072 -40.40913 -38.60555 -36.19003 -34.23889 -33.66136 -32.64912 -30.70612 -29.65403 -27.95859 -27.23159 -26.33593 -23.49072 -22.96027 -22.34993 -21.48325 -19.72878 -19.05543 -17.62384 -16.87460 -16.74196 -16.66413 -16.25299 -15.91542 -15.74370 -15.48446 -15.21001 -14.57850 -14.48484 -14.39312 -14.06296 -14.02007 -13.62889 -13.48944 -13.12609 -12.97193 -12.89841 -12.55730 -12.48369 -12.21322 -12.06622 -11.89710 -11.78798 -11.29076 -10.95170 -10.60787 -9.79943 -9.55869 -9.09271 -8.44787 -8.23351 -6.13190 0.31580 0.46090 0.77620 0.93275 1.33722 1.45460 1.50204 2.18798 2.50531 2.90049 2.99781 3.27949 3.60597 3.71379 3.89858 4.03785 4.17672 4.22378 4.38993 4.41713 4.43952 4.59492 4.63069 4.72123 4.75779 4.76816 4.84297 4.94798 5.06518 5.12148 5.15009 5.16779 5.30317 5.46236 5.55685 5.59338 5.71059 5.76461 5.81781 6.03814 6.09153 6.12828 6.59450 6.82380 7.00457 7.83976 8.78705 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.004021 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.787899 B = 6961.731511 C = 8133.010668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.114 4.114 5 C -0.136 4.136 6 C -0.108 4.108 7 C -0.118 4.118 8 C 0.173 3.827 9 N -0.738 5.738 10 C 0.257 3.743 11 C -0.263 4.263 12 C -0.025 4.025 13 C -0.262 4.262 14 C 0.153 3.847 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.017 2.983 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.316 4.316 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.091 14.867 16.416 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.132 4.132 5 C -0.154 4.154 6 C -0.126 4.126 7 C -0.119 4.119 8 C 0.050 3.950 9 N -0.368 5.368 10 C 0.154 3.846 11 C -0.286 4.286 12 C -0.044 4.044 13 C -0.283 4.283 14 C 0.102 3.898 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.115 0.885 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.340 4.340 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.923 14.583 16.373 24.496 hybrid contribution -0.030 0.381 -1.261 1.318 sum 10.893 14.964 15.112 23.894 Atomic orbital electron populations 1.20898 0.90792 1.03147 1.03014 1.20025 0.96570 0.92884 0.98242 1.21322 0.94865 0.97801 1.01200 1.21508 0.94295 0.99070 0.98344 1.21429 1.01070 0.92208 1.00669 1.21307 0.93328 0.99285 0.98687 1.19797 0.94159 0.94039 1.03881 1.20167 0.97600 0.93449 0.83773 1.44682 1.60332 1.22154 1.09596 1.17532 0.88671 0.86538 0.91906 1.20549 1.11631 0.97985 0.98444 1.20828 0.93135 0.95854 0.94541 1.20268 1.12897 1.02575 0.92516 1.19629 0.91397 0.93372 0.85409 1.83946 1.72399 1.42962 1.14559 1.21740 1.36321 1.01002 0.89728 0.88491 1.26558 0.95482 1.00301 0.99634 1.70184 1.35833 1.28132 1.21900 0.84685 0.79323 0.76626 0.75787 1.18287 1.19429 1.18284 1.20496 1.14202 1.02318 0.97027 0.90043 0.90789 0.92139 0.84447 0.83804 0.84058 0.85157 0.91110 0.91031 0.76978 0.84020 0.82964 0.87560 0.91876 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 9.26 71.24 0.66 -1.60 16 2 C -0.08 -1.50 5.88 -19.87 -0.12 -1.62 16 3 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 4 C -0.11 -1.73 10.05 22.27 0.22 -1.51 16 5 C -0.14 -2.17 10.05 22.27 0.22 -1.94 16 6 C -0.11 -2.00 9.67 22.27 0.22 -1.78 16 7 C -0.12 -2.42 5.25 -19.87 -0.10 -2.52 16 8 C 0.17 3.80 4.16 85.63 0.36 4.16 16 9 N -0.74 -21.03 5.06 -343.20 -1.74 -22.76 16 10 C 0.26 9.33 6.65 38.20 0.25 9.59 16 11 C -0.26 -8.57 9.31 22.43 0.21 -8.36 16 12 C -0.03 -0.87 10.03 22.23 0.22 -0.65 16 13 C -0.26 -11.74 9.99 22.41 0.22 -11.51 16 14 C 0.15 8.00 6.64 22.56 0.15 8.15 16 15 O -0.23 -14.54 9.76 -22.78 -0.22 -14.76 16 16 C -0.41 -24.83 9.49 67.92 0.64 -24.18 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 18 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 19 N -0.92 -57.96 13.67 21.61 0.30 -57.66 16 20 Si 1.02 44.00 29.55 68.60 2.03 46.02 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 C -0.32 -14.50 9.01 22.52 0.20 -14.30 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 27 H 0.06 1.36 6.35 -2.39 -0.02 1.34 16 28 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 29 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.13 2.15 8.04 -2.91 -0.02 2.12 16 32 H 0.07 1.46 7.80 -2.39 -0.02 1.44 16 33 H 0.07 1.50 7.10 -2.38 -0.02 1.49 16 34 H 0.40 11.37 8.47 -92.70 -0.79 10.58 16 35 H 0.14 3.59 6.73 -2.91 -0.02 3.57 16 36 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.11 5.23 5.64 -2.91 -0.02 5.22 16 Total: -1.00 -72.89 330.14 4.69 -68.19 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.28 Total: 31.94 kcal Atomic # 6 Polarization: -55.01 SS G_CDS: 4.05 Total: -50.97 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.44 Total: -80.43 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.22 Total: -14.76 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.89 4.69 -68.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.806 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds