Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38240 * 119.99610 * 2 1 4 4 C 1.38237 * 119.99769 * 179.72768 * 3 2 1 5 5 C 1.38237 * 119.99776 * 0.25844 * 4 3 2 6 6 C 1.50696 * 119.99355 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.47403 * 90.00410 * 6 5 4 8 8 C 1.39672 * 119.99880 * 179.97438 * 7 6 5 9 9 C 1.38994 * 120.04349 * 359.72695 * 8 7 6 10 10 C 1.38149 * 120.06317 * 179.74157 * 9 8 7 11 11 C 1.38172 * 120.14116 * 0.51085 * 10 9 8 12 12 C 1.38908 * 120.07938 * 359.76185 * 11 10 9 13 13 O 1.35752 * 120.03492 * 179.97438 * 12 11 10 14 14 C 1.34831 * 117.00314 * 174.48689 * 13 12 11 15 15 H 1.08000 * 119.99766 * 5.05677 * 14 13 12 16 16 C 1.38653 * 120.00226 * 185.05412 * 14 13 12 17 17 N 1.31558 * 119.99603 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47291 * 60.00560 * 18 16 14 20 20 H 1.48507 * 109.47091 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47050 * 299.99889 * 18 16 14 22 22 C 1.38753 * 120.03459 * 179.97438 * 8 7 6 23 23 C 1.38233 * 120.00311 * 0.02562 * 5 4 3 24 24 C 1.38233 * 120.00206 * 180.26858 * 2 1 3 25 25 H 1.08997 * 109.47528 * 89.99585 * 1 2 3 26 26 H 1.09007 * 109.47108 * 209.99639 * 1 2 3 27 27 H 1.09002 * 109.47363 * 329.99157 * 1 2 3 28 28 H 1.07996 * 119.99688 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.99686 * 180.27955 * 4 3 2 30 30 H 1.09003 * 109.47138 * 209.99937 * 6 5 4 31 31 H 1.09002 * 109.47689 * 330.00052 * 6 5 4 32 32 H 0.96998 * 119.99489 * 359.97438 * 7 6 5 33 33 H 1.08002 * 119.96942 * 359.97035 * 9 8 7 34 34 H 1.08004 * 119.93100 * 180.22483 * 10 9 8 35 35 H 1.08006 * 119.96223 * 179.74678 * 11 10 9 36 36 H 0.97001 * 119.99688 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.07222 * 359.97438 * 22 8 7 38 38 H 1.07995 * 120.00115 * 179.97438 * 23 5 4 39 39 H 1.07995 * 120.00382 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0057 5 6 4.2716 0.0001 0.0060 6 6 5.7786 0.0003 0.0128 7 7 6.2608 -0.0030 1.3962 8 6 7.6328 -0.0040 1.6575 9 6 8.5415 -0.0077 0.6057 10 6 9.8987 -0.0033 0.8637 11 6 10.3572 -0.0059 2.1671 12 6 9.4543 -0.0080 3.2227 13 8 9.9058 -0.0112 4.5030 14 6 8.9817 0.1023 5.4783 15 1 7.9310 0.1081 5.2285 16 6 9.3803 0.2116 6.8017 17 7 10.6603 0.2050 7.1058 18 14 8.1001 0.3695 8.1528 19 1 7.2183 -0.8252 8.1413 20 1 8.7797 0.4710 9.4693 21 1 7.2847 1.5890 7.9219 22 6 8.0903 -0.0066 2.9674 23 6 3.5806 -1.1970 0.0000 24 6 2.1982 -1.1971 -0.0056 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5140 28 1 1.6580 2.1324 0.0004 29 1 4.1203 2.1326 0.0103 30 1 6.1444 -0.8885 -0.5015 31 1 6.1442 0.8915 -0.4973 32 1 5.6271 -0.0045 2.1306 33 1 8.1863 -0.0102 -0.4142 34 1 10.6029 -0.0024 0.0448 35 1 11.4189 -0.0066 2.3655 36 1 10.9392 0.2818 8.0317 37 1 7.3864 -0.0075 3.7865 38 1 4.1206 -2.1323 -0.0001 39 1 1.6583 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = 17.872623 kcal Electronic energy + Delta-G solvation = -20429.856879 eV Core-core repulsion = 17302.554942 eV Total energy + Delta-G solvation = -3127.301937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74658 -38.92144 -36.99620 -35.02299 -32.87074 -32.11006 -31.11899 -29.68269 -28.53312 -27.17514 -25.19567 -24.39124 -22.90450 -21.74751 -21.05766 -20.36379 -17.85872 -17.44002 -16.36145 -15.75090 -15.50464 -15.16259 -14.89544 -14.64120 -14.17763 -13.96288 -13.79090 -13.61818 -13.59277 -13.26932 -12.92771 -12.63361 -12.44544 -12.26827 -12.11300 -11.59715 -11.39713 -11.18019 -11.13684 -10.88459 -10.76201 -10.57790 -10.37097 -9.38082 -9.34772 -9.10814 -8.77846 -8.72198 -7.30936 -6.73765 -6.37557 -3.96723 1.05863 1.22084 2.42201 2.61208 3.16604 3.18411 3.20401 3.43468 4.02225 4.09651 4.54606 4.59843 4.74359 4.74529 4.83571 4.99404 5.18956 5.27271 5.29611 5.39822 5.41097 5.49909 5.58850 5.62492 5.74080 5.89573 5.90244 6.02735 6.19854 6.31627 6.37912 6.40323 6.46663 6.67178 6.69783 6.80862 7.07976 7.19022 7.42814 7.53068 7.70930 8.05702 8.08922 8.24745 9.08601 9.81495 10.80855 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.003651 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.394277 B = 7666.549388 C = 9138.695007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.106 4.106 6 C 0.173 3.827 7 N -0.750 5.750 8 C 0.249 3.751 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.189 3.811 13 O -0.179 6.179 14 C -0.389 4.389 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.302 4.302 23 C -0.097 4.097 24 C -0.124 4.124 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.395 0.605 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.269 0.731 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.079 -0.230 -14.550 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.115 4.115 5 C -0.106 4.106 6 C 0.049 3.951 7 N -0.382 5.382 8 C 0.148 3.852 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.257 4.257 12 C 0.135 3.865 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.501 5.501 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.325 4.325 23 C -0.115 4.115 24 C -0.142 4.142 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.229 0.771 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.707 -0.233 -14.431 22.078 hybrid contribution -0.963 0.083 0.956 1.360 sum -17.670 -0.150 -13.475 22.222 Atomic orbital electron populations 1.20803 0.91271 1.02833 1.02262 1.19966 0.96074 0.93285 0.99202 1.21037 0.94147 0.97555 1.01501 1.21121 0.94113 0.97789 0.98502 1.19964 0.95442 0.93396 1.01820 1.20043 0.88511 1.01508 0.85083 1.44553 1.03829 1.84179 1.05681 1.17469 0.82638 0.92035 0.93069 1.20069 0.92854 1.20971 0.96402 1.20374 0.94408 0.96001 0.95111 1.20039 0.98543 1.16295 0.90846 1.19068 0.91218 0.90254 0.85980 1.83985 1.35602 1.78518 1.10053 1.21251 0.88431 1.52039 0.84822 0.89267 1.25259 0.97167 0.96724 0.97382 1.70034 1.14280 1.46398 1.19369 0.85817 0.79409 0.79096 0.79292 1.19607 1.20313 1.19605 1.20502 0.95954 1.21360 0.94721 1.21118 0.94112 0.97779 0.98522 1.21033 0.94144 0.97555 1.01511 0.91197 0.91528 0.91528 0.86053 0.85791 0.91942 0.91939 0.77077 0.87869 0.87206 0.86924 0.92092 0.85858 0.85797 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.09 -0.79 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 5 C -0.11 -1.19 5.25 -104.63 -0.55 -1.74 16 6 C 0.17 2.15 5.04 -5.19 -0.03 2.13 16 7 N -0.75 -11.62 5.72 -59.83 -0.34 -11.97 16 8 C 0.25 4.77 6.65 -83.82 -0.56 4.22 16 9 C -0.28 -5.09 9.31 -39.33 -0.37 -5.45 16 10 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 11 C -0.24 -5.25 9.99 -39.36 -0.39 -5.64 16 12 C 0.19 4.77 6.64 -39.14 -0.26 4.51 16 13 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 14 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 15 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.87 -25.92 13.67 55.48 0.76 -25.16 16 18 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.30 -6.83 9.01 -39.20 -0.35 -7.18 16 23 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 24 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.40 8.09 -51.92 -0.42 -0.02 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 31 H 0.06 0.76 7.90 -51.93 -0.41 0.35 16 32 H 0.40 5.96 8.47 -40.82 -0.35 5.62 16 33 H 0.10 1.60 6.73 -52.49 -0.35 1.25 16 34 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 2.82 5.64 -52.48 -0.30 2.52 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -31.78 334.41 -9.09 -40.86 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.02 Total: 8.50 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -4.50 Total: -27.99 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.42 Total: -37.12 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.78 -9.09 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.735 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds