Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 N 1.46892 * 109.47065 * 270.02155 * 15 14 13 17 17 C 1.46895 * 111.00142 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47549 * 180.02562 * 17 16 15 19 19 C 1.38240 * 119.99803 * 269.72575 * 18 17 16 20 20 C 1.38234 * 119.99572 * 179.76133 * 19 18 17 21 21 C 1.38237 * 120.00143 * 0.51336 * 20 19 18 22 22 C 1.38237 * 119.99792 * 359.74118 * 21 20 19 23 23 C 1.38227 * 120.00269 * 0.02562 * 22 21 20 24 24 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 25 25 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 27 27 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 28 28 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 29 29 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 30 30 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 31 31 H 1.00902 * 111.00092 * 303.95585 * 16 15 14 32 32 H 1.09005 * 109.47317 * 300.00577 * 17 16 15 33 33 H 1.09000 * 109.47422 * 59.99787 * 17 16 15 34 34 H 1.07991 * 120.00141 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.99957 * 180.22709 * 20 19 18 36 36 H 1.07999 * 119.99971 * 179.71758 * 21 20 19 37 37 H 1.08008 * 119.99842 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.00152 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.03219 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2708 -7.7904 -0.8705 17 6 0.6011 -9.0947 -0.7809 18 6 0.3830 -9.6438 -2.1672 19 6 -0.7850 -9.3565 -2.8486 20 6 -0.9828 -9.8561 -4.1222 21 6 -0.0174 -10.6518 -4.7103 22 6 1.1482 -10.9434 -4.0268 23 6 1.3482 -10.4398 -2.7551 24 6 1.4365 -4.7345 0.2256 25 1 -0.4849 0.8401 -0.0004 26 1 3.9527 -2.4857 -0.0140 27 1 5.2811 -4.5473 0.1885 28 1 4.1534 -6.7248 0.4030 29 1 2.1300 -7.9003 1.0435 30 1 0.5456 -7.0924 0.9735 31 1 0.7438 -7.1526 -1.4480 32 1 1.2237 -9.7845 -0.2110 33 1 -0.3604 -8.9760 -0.2813 34 1 -1.5413 -8.7389 -2.3873 35 1 -1.8937 -9.6287 -4.6560 36 1 -0.1740 -11.0459 -5.7035 37 1 1.9024 -11.5654 -4.4861 38 1 2.2588 -10.6680 -2.2210 39 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037187670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = 19.745197 kcal Electronic energy + Delta-G solvation = -20265.792527 eV Core-core repulsion = 17138.571791 eV Total energy + Delta-G solvation = -3127.220736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.43880 -39.01689 -37.00452 -35.48650 -32.33697 -32.02292 -30.99372 -29.99481 -28.93324 -26.14306 -25.21822 -23.66147 -22.67081 -21.56011 -21.23280 -20.60169 -17.71148 -17.14587 -16.76768 -15.81727 -15.36046 -15.06786 -14.86100 -14.75765 -14.41171 -14.18863 -13.87080 -13.52876 -13.50873 -13.08299 -12.69969 -12.51087 -12.47420 -12.04214 -11.82021 -11.56547 -11.29667 -11.13542 -11.07481 -10.78598 -10.65948 -10.58295 -10.40809 -9.32778 -9.02829 -8.94326 -8.82265 -8.38305 -8.04270 -7.20732 -6.43213 -4.02417 1.21421 1.30591 2.12964 2.41443 3.13697 3.14546 3.19334 3.64546 3.97910 4.36128 4.67704 4.70322 4.80264 4.90097 5.00653 5.07915 5.14053 5.26240 5.31821 5.39486 5.50023 5.55598 5.61019 5.78853 5.86914 5.89506 5.94182 5.99171 6.21314 6.33777 6.34860 6.39659 6.52491 6.67397 6.87850 6.92655 7.03751 7.09147 7.28764 7.40412 7.45001 7.46143 7.84602 8.01892 9.02742 9.73245 10.75064 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.002980 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.148588 B = 9395.017410 C =10007.425021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.153 3.847 11 C -0.230 4.230 12 C -0.078 4.078 13 C -0.188 4.188 14 C -0.048 4.048 15 C 0.106 3.894 16 N -0.678 5.678 17 C 0.096 3.904 18 C -0.079 4.079 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.098 4.098 24 C -0.185 4.185 25 H 0.269 0.731 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.347 0.653 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -18.569 -3.982 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.099 3.901 11 C -0.250 4.250 12 C -0.096 4.096 13 C -0.207 4.207 14 C -0.048 4.048 15 C -0.023 4.023 16 N -0.310 5.310 17 C -0.033 4.033 18 C -0.080 4.080 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.205 4.205 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.165 0.835 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.454 -18.622 -4.020 19.107 hybrid contribution -0.352 1.197 0.138 1.255 sum 1.102 -17.425 -3.882 17.887 Atomic orbital electron populations 1.70041 1.05941 1.27578 1.46430 1.25276 0.95835 0.98786 0.96631 0.85721 0.78918 0.80147 0.78701 1.19895 1.20280 1.19218 1.21312 0.91774 0.80849 1.52824 0.89132 1.83974 1.34257 1.11385 1.78804 1.19300 0.90263 0.87987 0.92513 1.21199 0.93844 0.99027 1.10905 1.20748 0.98446 0.92407 0.97996 1.20417 0.93467 0.96780 1.10083 1.19148 0.93536 0.92571 0.99570 1.20815 0.98419 0.93224 0.89795 1.60566 1.52680 1.04118 1.13593 1.20905 0.97424 0.92109 0.92846 1.19824 0.94233 0.97597 0.96328 1.21105 0.97313 0.99764 0.95059 1.21122 0.99358 0.98106 0.95363 1.21144 0.94356 0.98866 0.99801 1.21152 0.97544 1.00381 0.95083 1.21040 0.98428 0.96962 0.95202 1.20026 0.99059 0.90116 1.11286 0.92089 0.85658 0.87491 0.87608 0.90536 0.94602 0.83477 0.90251 0.94427 0.86223 0.86174 0.86327 0.86202 0.85951 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.76 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.74 16 8 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 9 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 10 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.23 -5.09 9.17 -39.39 -0.36 -5.46 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.19 -3.34 9.70 -39.53 -0.38 -3.72 16 14 C -0.05 -0.85 5.39 -104.65 -0.56 -1.42 16 15 C 0.11 1.49 5.81 -4.98 -0.03 1.47 16 16 N -0.68 -9.10 6.48 -116.35 -0.75 -9.86 16 17 C 0.10 1.05 5.81 -4.98 -0.03 1.02 16 18 C -0.08 -0.89 5.39 -104.62 -0.56 -1.45 16 19 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 23 C -0.10 -1.04 9.70 -39.59 -0.38 -1.42 16 24 C -0.18 -3.92 9.65 -39.40 -0.38 -4.30 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.35 4.95 8.71 -39.29 -0.34 4.61 16 32 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.11 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -30.96 337.58 -9.77 -40.73 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.11 Total: 8.13 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -4.73 Total: -29.80 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.00 Total: -34.61 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.96 -9.77 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037187670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.480 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds