Wall clock time and date at job start Tue Mar 31 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48497 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46936 * 299.99616 * 3 2 1 6 6 H 1.48498 * 109.47220 * 59.99435 * 3 2 1 7 7 C 1.39865 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99554 * 197.97884 * 7 2 1 9 9 C 1.41135 * 120.00289 * 17.97744 * 7 2 1 10 10 C 1.40888 * 120.15268 * 24.60189 * 9 7 2 11 11 C 1.36342 * 119.83186 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16238 * 0.25951 * 11 10 9 13 13 N 1.38864 * 119.84275 * 179.72339 * 12 11 10 14 14 C 1.46491 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47133 * 179.97438 * 14 13 12 16 16 H 1.08995 * 109.46721 * 304.99923 * 15 14 13 17 17 O 1.42902 * 109.46904 * 64.99751 * 15 14 13 18 18 C 1.50700 * 109.47240 * 184.99856 * 15 14 13 19 19 C 1.38239 * 119.99867 * 279.72851 * 18 15 14 20 20 C 1.38238 * 119.99709 * 179.78661 * 19 18 15 21 21 C 1.38233 * 119.99884 * 0.44179 * 20 19 18 22 22 C 1.38239 * 120.00105 * 359.81038 * 21 20 19 23 23 C 1.38235 * 119.99704 * 99.99606 * 18 15 14 24 24 C 1.39566 * 120.31690 * 359.48733 * 12 11 10 25 25 C 1.36343 * 120.16156 * 0.50975 * 24 12 11 26 26 H 0.97002 * 119.99580 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.07986 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.91963 * 179.97438 * 11 10 9 29 29 H 0.97003 * 119.99493 * 359.97438 * 13 12 11 30 30 H 1.08998 * 109.47051 * 299.99628 * 14 13 12 31 31 H 1.09005 * 109.47298 * 59.99690 * 14 13 12 32 32 H 0.96700 * 114.00110 * 60.00149 * 17 15 14 33 33 H 1.07997 * 120.00080 * 359.97438 * 19 18 15 34 34 H 1.07996 * 119.99802 * 180.27048 * 20 19 18 35 35 H 1.08001 * 120.00097 * 179.83254 * 21 20 19 36 36 H 1.08005 * 119.99771 * 180.02562 * 22 21 20 37 37 H 1.07991 * 120.00483 * 359.97438 * 23 18 15 38 38 H 1.08005 * 119.92172 * 180.23786 * 24 12 11 39 39 H 1.07993 * 120.08351 * 179.72378 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 -0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8843 2.3965 1.2124 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2893 9 6 1.3544 -2.4039 -0.3762 10 6 0.2261 -2.3566 -1.2187 11 6 -0.4009 -3.5127 -1.5781 12 6 0.0689 -4.7403 -1.1091 13 7 -0.5783 -5.9132 -1.4747 14 6 -0.0885 -7.2037 -0.9840 15 6 -0.9732 -8.3262 -1.5301 16 1 -2.0130 -8.1285 -1.2697 17 8 -0.8415 -8.3876 -2.9517 18 6 -0.5458 -9.6403 -0.9288 19 6 0.5504 -10.3100 -1.4394 20 6 0.9451 -11.5133 -0.8849 21 6 0.2380 -12.0513 0.1741 22 6 -0.8614 -11.3841 0.6812 23 6 -1.2534 -10.1787 0.1296 24 6 1.1891 -4.7952 -0.2784 25 6 1.8263 -3.6472 0.0891 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1410 -1.4070 -1.5789 28 1 -1.2661 -3.4780 -2.2235 29 1 -1.3553 -5.8780 -2.0544 30 1 0.9378 -7.3539 -1.3189 31 1 -0.1202 -7.2139 0.1056 32 1 0.0598 -8.5609 -3.2561 33 1 1.1004 -9.8917 -2.2694 34 1 1.8041 -12.0343 -1.2810 35 1 0.5447 -12.9927 0.6055 36 1 -1.4136 -11.8043 1.5089 37 1 -2.1122 -9.6574 0.5260 38 1 1.5495 -5.7490 0.0777 39 1 2.6903 -3.6908 0.7356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052684618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:58 Heat of formation + Delta-G solvation = -5.465478 kcal Electronic energy + Delta-G solvation = -20575.101321 eV Core-core repulsion = 17446.787368 eV Total energy + Delta-G solvation = -3128.313953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.88135 -38.03892 -37.04580 -34.68992 -32.89595 -31.80126 -31.08406 -29.70200 -28.92421 -27.24650 -24.42879 -23.38171 -22.76368 -21.43286 -20.53946 -20.14262 -17.79067 -17.18246 -16.40741 -16.05711 -15.94507 -15.26721 -14.89871 -14.47256 -14.40679 -13.85263 -13.70785 -13.59353 -13.01610 -12.84847 -12.62127 -12.49330 -12.00731 -11.92703 -11.68247 -11.37439 -11.21652 -11.11098 -11.04505 -10.79580 -10.45624 -10.18174 -9.65655 -9.28794 -9.23037 -9.14646 -8.96202 -8.53273 -7.47461 -6.63597 -6.37609 -4.02095 1.08628 1.17277 2.91308 3.11499 3.16387 3.21790 3.36187 3.51154 4.06421 4.10448 4.34567 4.61048 4.72415 4.76705 4.78673 4.90323 4.98639 5.12155 5.28521 5.37605 5.71431 5.76287 5.82680 5.88514 5.96746 6.21439 6.27681 6.28750 6.32092 6.37706 6.74859 6.86793 7.08076 7.21660 7.32055 7.46095 7.60299 7.68379 7.81575 8.16703 8.35554 8.49831 8.70126 8.81971 9.07473 9.16686 10.38522 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.002859 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.527801 B = 9791.513069 C =10053.371853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.123 4.123 11 C -0.162 4.162 12 C 0.092 3.908 13 N -0.757 5.757 14 C 0.116 3.884 15 C 0.138 3.862 16 H 0.110 0.890 17 O -0.551 6.551 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.161 4.161 25 C -0.189 4.189 26 H 0.275 0.725 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.389 0.611 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.374 0.626 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -18.771 -1.535 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.143 4.143 11 C -0.184 4.184 12 C -0.005 4.005 13 N -0.393 5.393 14 C -0.010 4.010 15 C 0.078 3.922 16 H 0.128 0.872 17 O -0.357 6.357 18 C -0.111 4.111 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.183 4.183 25 C -0.209 4.209 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.105 0.895 29 H 0.222 0.778 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.214 -18.588 -1.390 18.771 hybrid contribution 0.676 0.632 0.001 0.925 sum -1.538 -17.956 -1.389 18.076 Atomic orbital electron populations 1.69870 1.07361 1.28508 1.37757 1.25804 0.94658 1.00906 0.92730 0.86367 0.80985 0.81596 0.78311 1.18644 1.19962 1.20286 1.19396 0.97942 0.91358 1.41069 0.90926 1.17501 0.92412 0.92004 0.90913 1.20931 0.98122 0.96375 0.98838 1.20045 1.01585 0.91854 1.04873 1.17344 0.95920 0.85173 1.02082 1.43746 1.35284 1.02040 1.58251 1.21616 0.96711 0.84060 0.98598 1.21071 1.00668 0.89840 0.80613 0.87201 1.86613 1.34259 1.94640 1.20152 1.20494 0.96274 0.97164 0.97136 1.20909 0.96360 0.95535 1.00007 1.21122 0.99836 0.95918 0.96707 1.21179 0.95871 1.00017 0.96944 1.21158 0.97225 0.95356 0.99945 1.21043 0.99759 0.95844 0.95940 1.19855 0.97933 0.97016 1.03476 1.20550 1.02787 0.92675 1.04932 0.91380 0.86300 0.89471 0.77820 0.93234 0.92626 0.77782 0.86100 0.85946 0.86103 0.85930 0.85764 0.89646 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 10.96 55.54 0.61 -21.02 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.38 29.60 -169.99 -5.03 14.34 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.47 -12.80 9.03 -37.87 -0.34 -13.15 16 8 H 0.07 1.93 7.91 -52.48 -0.41 1.52 16 9 C 0.07 2.04 5.57 -106.79 -0.60 1.45 16 10 C -0.12 -3.26 8.64 -39.26 -0.34 -3.60 16 11 C -0.16 -3.84 9.82 -39.77 -0.39 -4.23 16 12 C 0.09 2.03 6.67 -83.69 -0.56 1.47 16 13 N -0.76 -13.34 5.65 -58.50 -0.33 -13.67 16 14 C 0.12 1.68 4.51 -4.04 -0.02 1.66 16 15 C 0.14 1.61 3.24 -27.88 -0.09 1.52 16 16 H 0.11 1.28 8.00 -51.93 -0.42 0.86 16 17 O -0.55 -6.63 13.13 -35.23 -0.46 -7.09 16 18 C -0.11 -1.19 4.97 -104.62 -0.52 -1.71 16 19 C -0.11 -1.08 9.32 -39.58 -0.37 -1.45 16 20 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -1.09 9.67 -39.58 -0.38 -1.47 16 24 C -0.16 -3.67 9.23 -39.77 -0.37 -4.04 16 25 C -0.19 -4.76 9.74 -39.26 -0.38 -5.15 16 26 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 27 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 28 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.39 6.44 8.47 -40.82 -0.35 6.09 16 30 H 0.05 0.72 7.92 -51.93 -0.41 0.31 16 31 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 32 H 0.37 3.47 7.50 45.56 0.34 3.81 16 33 H 0.12 0.98 6.78 -52.49 -0.36 0.63 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 38 H 0.09 1.75 6.68 -52.48 -0.35 1.40 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -30.05 330.31 -10.23 -40.28 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.36 Total: 13.40 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -5.64 Total: -31.22 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.28 Total: -34.69 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.46 Total: -7.09 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.05 -10.23 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052684618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.813 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds