Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48505 * 109.46795 * 239.99663 * 3 2 1 5 5 H 1.48499 * 109.46888 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47570 * 119.99758 * 3 2 1 7 7 C 1.39866 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 197.95045 * 7 2 1 9 9 C 1.41135 * 119.99480 * 17.95852 * 7 2 1 10 10 C 1.40887 * 120.15128 * 204.59520 * 9 7 2 11 11 C 1.36348 * 119.83581 * 180.02562 * 10 9 7 12 12 C 1.39562 * 120.15793 * 0.02562 * 11 10 9 13 13 N 1.38863 * 119.84066 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00105 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46992 * 179.97438 * 14 13 12 16 16 H 1.09007 * 109.47135 * 60.00524 * 15 14 13 17 17 O 1.42892 * 109.47199 * 300.00142 * 15 14 13 18 18 C 1.50701 * 109.46939 * 179.97438 * 15 14 13 19 19 C 1.38235 * 120.00122 * 84.73088 * 18 15 14 20 20 C 1.38229 * 120.00142 * 179.79130 * 19 18 15 21 21 C 1.38236 * 119.99947 * 0.43430 * 20 19 18 22 22 C 1.38236 * 120.00060 * 359.81484 * 21 20 19 23 23 C 1.38236 * 119.99871 * 265.00080 * 18 15 14 24 24 C 1.39567 * 120.31892 * 0.24518 * 12 11 10 25 25 C 1.36336 * 120.15796 * 359.48687 * 24 12 11 26 26 H 0.96999 * 120.00242 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08738 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.91790 * 179.97438 * 11 10 9 29 29 H 0.97000 * 119.99883 * 359.97438 * 13 12 11 30 30 H 1.09004 * 109.46838 * 299.99711 * 14 13 12 31 31 H 1.09000 * 109.47323 * 59.99698 * 14 13 12 32 32 H 0.96703 * 113.99845 * 299.99578 * 17 15 14 33 33 H 1.07997 * 119.99571 * 359.97438 * 19 18 15 34 34 H 1.07996 * 120.00308 * 180.27298 * 20 19 18 35 35 H 1.08000 * 119.99999 * 179.84275 * 21 20 19 36 36 H 1.08000 * 120.00240 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00418 * 359.97438 * 23 18 15 38 38 H 1.08005 * 119.91976 * 179.72591 * 24 12 11 39 39 H 1.08000 * 120.08185 * 180.23171 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6966 1.2125 7 6 2.0084 -1.2113 0.0005 8 1 3.0490 -1.2339 0.2888 9 6 1.3542 -2.4039 -0.3758 10 6 1.8267 -3.6471 0.0889 11 6 1.1901 -4.7953 -0.2792 12 6 0.0734 -4.7411 -1.1145 13 7 -0.5696 -5.9146 -1.4856 14 6 -1.7424 -5.8616 -2.3618 15 6 -2.2548 -7.2810 -2.6144 16 1 -2.5305 -7.7420 -1.6658 17 8 -1.2281 -8.0539 -3.2390 18 6 -3.4617 -7.2265 -3.5152 19 6 -3.2986 -7.1779 -4.8870 20 6 -4.4057 -7.1322 -5.7135 21 6 -5.6758 -7.1261 -5.1678 22 6 -5.8388 -7.1696 -3.7958 23 6 -4.7318 -7.2195 -2.9694 24 6 -0.3969 -3.5134 -1.5831 25 6 0.2265 -2.3569 -1.2189 26 1 -0.4850 0.8400 -0.0004 27 1 2.6911 -3.6907 0.7350 28 1 1.5515 -5.7491 0.0759 29 1 -0.2421 -6.7694 -1.1646 30 1 -2.5255 -5.2717 -1.8854 31 1 -1.4668 -5.4011 -3.3105 32 1 -0.9330 -7.7015 -4.0898 33 1 -2.3063 -7.1785 -5.3131 34 1 -4.2784 -7.0987 -6.7854 35 1 -6.5407 -7.0879 -5.8134 36 1 -6.8311 -7.1644 -3.3694 37 1 -4.8592 -7.2535 -1.8975 38 1 -1.2590 -3.4793 -2.2328 39 1 -0.1407 -1.4073 -1.5793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052684619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -5.322093 kcal Electronic energy + Delta-G solvation = -20652.494613 eV Core-core repulsion = 17524.186878 eV Total energy + Delta-G solvation = -3128.307735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.86679 -38.03381 -37.03761 -34.66469 -32.91700 -31.79163 -31.05195 -29.44767 -29.19603 -27.21038 -24.43536 -23.27676 -22.75085 -21.47055 -20.69369 -19.94634 -17.78217 -17.18650 -16.49521 -16.01825 -15.95966 -15.04506 -14.92907 -14.55474 -14.39686 -13.84064 -13.69993 -13.57156 -12.99750 -12.83120 -12.59762 -12.50533 -12.03606 -11.88474 -11.66250 -11.34997 -11.19198 -11.11720 -10.99898 -10.83279 -10.45956 -10.17712 -9.69297 -9.27214 -9.21953 -9.12397 -8.93062 -8.52292 -7.47884 -6.62727 -6.37509 -4.01819 1.10965 1.19597 2.94317 3.11676 3.15077 3.18420 3.37473 3.53203 4.06379 4.11063 4.35000 4.63885 4.74540 4.77748 4.80076 4.92591 5.01021 5.13296 5.30303 5.40153 5.73772 5.78245 5.83372 5.91764 5.98989 6.23754 6.29455 6.29975 6.33911 6.39489 6.77089 6.93615 6.95403 7.21624 7.37519 7.46215 7.56799 7.70759 7.86389 8.16563 8.30548 8.50551 8.73018 8.82109 9.07538 9.16901 10.38890 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.003191 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.421231 B = 8773.500701 C = 9474.447525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.187 4.187 11 C -0.157 4.157 12 C 0.091 3.909 13 N -0.757 5.757 14 C 0.116 3.884 15 C 0.138 3.862 16 H 0.110 0.890 17 O -0.551 6.551 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.165 4.165 25 C -0.125 4.125 26 H 0.276 0.724 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.388 0.612 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.374 0.626 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -11.853 -8.941 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.207 4.207 11 C -0.179 4.179 12 C -0.005 4.005 13 N -0.393 5.393 14 C -0.011 4.011 15 C 0.078 3.922 16 H 0.128 0.872 17 O -0.357 6.357 18 C -0.111 4.111 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.187 4.187 25 C -0.145 4.145 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.222 0.778 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.229 -11.943 -8.495 17.873 hybrid contribution 0.349 0.941 -0.338 1.059 sum -9.879 -11.003 -8.833 17.224 Atomic orbital electron populations 1.69848 1.07360 1.28692 1.37620 1.25793 0.94651 1.00867 0.92723 0.86463 0.80129 0.80851 0.79731 1.19101 1.20598 1.19272 1.19338 0.97909 0.91387 1.41263 0.90977 1.17487 0.92417 0.91981 0.90930 1.20555 1.02699 0.92612 1.04851 1.19809 0.97813 0.97087 1.03231 1.17344 0.95791 0.85546 1.01859 1.43722 1.32493 1.06116 1.56987 1.21613 0.89706 0.94804 0.94937 1.21060 0.84314 0.92004 0.94774 0.87207 1.86598 1.55989 1.53803 1.39312 1.20495 0.95476 1.00387 0.94721 1.20895 0.99023 0.99963 0.92920 1.21118 0.92576 1.00107 0.99782 1.21178 0.97298 1.00298 0.95265 1.21155 0.98707 1.00061 0.93733 1.21033 0.91827 0.99666 1.00112 1.20086 1.01646 0.92003 1.04941 1.20921 0.98241 0.96389 0.98917 0.91293 0.89031 0.89541 0.77836 0.92515 0.93221 0.77731 0.86101 0.85958 0.86108 0.85927 0.85753 0.89585 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 10.96 55.54 0.61 -21.02 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.37 29.60 -169.99 -5.03 14.34 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.07 2.05 5.57 -106.79 -0.60 1.45 16 10 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 11 C -0.16 -3.60 9.82 -39.77 -0.39 -3.99 16 12 C 0.09 2.02 6.67 -83.69 -0.56 1.46 16 13 N -0.76 -13.32 5.59 -58.50 -0.33 -13.65 16 14 C 0.12 1.70 4.54 -4.04 -0.02 1.68 16 15 C 0.14 1.64 3.30 -27.88 -0.09 1.55 16 16 H 0.11 1.28 8.05 -51.93 -0.42 0.86 16 17 O -0.55 -6.64 12.88 -35.23 -0.45 -7.09 16 18 C -0.11 -1.22 5.00 -104.62 -0.52 -1.74 16 19 C -0.11 -1.11 9.33 -39.59 -0.37 -1.48 16 20 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.11 -1.13 9.68 -39.58 -0.38 -1.51 16 24 C -0.16 -3.91 9.23 -39.77 -0.37 -4.28 16 25 C -0.12 -3.31 8.64 -39.27 -0.34 -3.65 16 26 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 27 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.39 6.36 8.35 -40.82 -0.34 6.01 16 30 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 31 H 0.05 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.37 3.54 7.40 45.56 0.34 3.87 16 33 H 0.12 1.02 6.62 -52.49 -0.35 0.67 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.09 1.87 6.68 -52.48 -0.35 1.52 16 39 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -29.91 329.84 -10.23 -40.14 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.35 Total: 13.71 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -5.64 Total: -31.40 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.28 Total: -34.67 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.45 Total: -7.09 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.91 -10.23 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052684619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.820 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds