Wall clock time and date at job start Tue Mar 31 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00245 * 2 1 4 4 H 1.48499 * 109.47392 * 264.62758 * 3 2 1 5 5 H 1.48502 * 109.47218 * 24.63393 * 3 2 1 6 6 H 1.48503 * 109.47043 * 144.63039 * 3 2 1 7 7 C 1.37875 * 119.99370 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00493 * 4.78922 * 7 2 1 9 9 C 1.50706 * 119.99853 * 184.79400 * 7 2 1 10 10 H 1.09005 * 109.46833 * 4.93341 * 9 7 2 11 11 O 1.42900 * 109.46807 * 124.93100 * 9 7 2 12 12 C 1.42901 * 113.99993 * 269.99669 * 11 9 7 13 13 C 1.53005 * 109.47032 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47435 * 180.02562 * 13 12 11 15 15 C 1.38223 * 119.61821 * 124.72769 * 14 13 12 16 16 C 1.38626 * 119.16005 * 179.75826 * 15 14 13 17 17 C 1.38678 * 118.42052 * 0.51024 * 16 15 14 18 18 C 1.38178 * 119.16343 * 359.73009 * 17 16 15 19 19 N 1.31858 * 119.61360 * 305.00689 * 14 13 12 20 20 C 1.50695 * 109.46944 * 244.93331 * 9 7 2 21 21 C 1.38234 * 119.99843 * 95.13949 * 20 9 7 22 22 C 1.38245 * 119.99770 * 179.97438 * 21 20 9 23 23 C 1.38234 * 119.99710 * 359.95211 * 22 21 20 24 24 C 1.38234 * 120.00531 * 0.02562 * 23 22 21 25 25 C 1.38234 * 120.00046 * 275.11330 * 20 9 7 26 26 H 0.97005 * 119.99482 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47570 * 300.00424 * 12 11 9 28 28 H 1.09000 * 109.46814 * 60.01005 * 12 11 9 29 29 H 1.08997 * 109.47349 * 300.00877 * 13 12 11 30 30 H 1.09005 * 109.46870 * 60.00309 * 13 12 11 31 31 H 1.07992 * 120.42328 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.79373 * 180.26688 * 16 15 14 33 33 H 1.07997 * 120.41846 * 179.71352 * 17 16 15 34 34 H 1.08002 * 119.61869 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.00181 * 359.97438 * 21 20 9 36 36 H 1.07995 * 119.99780 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.99554 * 179.72149 * 23 22 21 38 38 H 1.07991 * 120.00184 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.99830 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6103 1.9808 -1.3939 5 1 1.3946 2.6827 0.5836 6 1 3.4855 1.4754 0.8105 7 6 2.0044 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0790 9 6 3.5076 -1.1966 0.1085 10 1 3.8620 -0.1779 0.2662 11 8 3.9037 -2.0147 1.2111 12 6 4.0093 -1.3098 2.4496 13 6 4.4379 -2.2790 3.5532 14 6 4.5487 -1.5358 4.8595 15 6 3.8367 -1.9770 5.9590 16 6 3.9495 -1.2891 7.1573 17 6 4.7697 -0.1718 7.2022 18 6 5.4468 0.2128 6.0607 19 7 5.3194 -0.4688 4.9388 20 6 4.1025 -1.7445 -1.1630 21 6 4.5089 -0.8817 -2.1637 22 6 5.0552 -1.3843 -3.3299 23 6 5.1960 -2.7496 -3.4948 24 6 4.7900 -3.6123 -2.4939 25 6 4.2424 -3.1097 -1.3284 26 1 -0.4850 0.8401 -0.0004 27 1 4.7512 -0.5171 2.3544 28 1 3.0428 -0.8743 2.7033 29 1 3.6963 -3.0721 3.6485 30 1 5.4045 -2.7142 3.2993 31 1 3.2032 -2.8486 5.8865 32 1 3.4085 -1.6133 8.0339 33 1 4.8776 0.3909 8.1177 34 1 6.0878 1.0816 6.0875 35 1 4.3996 0.1849 -2.0344 36 1 5.3723 -0.7104 -4.1119 37 1 5.6186 -3.1424 -4.4078 38 1 4.8996 -4.6788 -2.6230 39 1 3.9249 -3.7837 -0.5465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021805.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:44 Heat of formation + Delta-G solvation = 9.402502 kcal Electronic energy + Delta-G solvation = -21102.818823 eV Core-core repulsion = 17975.149594 eV Total energy + Delta-G solvation = -3127.669229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14924 -38.63860 -36.75442 -33.63944 -32.59290 -32.26864 -31.03117 -30.18166 -28.72270 -26.98765 -23.95462 -23.38355 -22.63722 -21.84178 -21.01074 -20.10076 -17.21610 -16.87151 -16.32953 -16.11636 -15.78382 -15.20678 -14.83748 -14.64334 -14.14196 -13.93650 -13.58262 -13.34099 -13.13879 -12.85759 -12.74135 -12.53850 -12.33661 -11.80353 -11.64679 -11.56323 -11.23992 -11.00906 -10.62193 -10.40330 -10.27827 -9.86985 -9.77658 -9.37460 -9.32255 -8.92650 -8.78133 -8.44914 -8.21722 -7.74782 -6.24889 -4.26773 1.11658 1.28674 2.09660 2.14444 3.16204 3.22523 3.25106 3.79665 4.23950 4.29447 4.47304 4.60367 4.80614 4.99030 5.06131 5.13146 5.18131 5.53207 5.55536 5.57246 5.59999 5.70547 5.72838 5.86273 6.04835 6.08880 6.09988 6.16699 6.25793 6.33199 6.48955 6.56254 6.60443 6.72590 6.77635 6.80828 7.13803 7.24766 7.42775 7.48144 7.74068 8.05530 8.19668 8.47887 8.88273 9.37036 10.87420 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.004858 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.816723 B = 5761.985391 C = 6712.974090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.207 3.793 10 H 0.039 0.961 11 O -0.394 6.394 12 C 0.083 3.917 13 C -0.069 4.069 14 C 0.143 3.857 15 C -0.168 4.168 16 C -0.075 4.075 17 C -0.186 4.186 18 C 0.101 3.899 19 N -0.481 5.481 20 C -0.032 4.032 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.147 4.147 24 C -0.126 4.126 25 C -0.101 4.101 26 H 0.267 0.733 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.106 -2.032 8.695 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.688 3.312 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.100 0.900 9 C 0.151 3.849 10 H 0.057 0.943 11 O -0.314 6.314 12 C 0.005 3.995 13 C -0.107 4.107 14 C 0.006 3.994 15 C -0.188 4.188 16 C -0.101 4.101 17 C -0.206 4.206 18 C -0.057 4.057 19 N -0.190 5.190 20 C -0.033 4.033 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.166 4.166 24 C -0.145 4.145 25 C -0.120 4.120 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.417 -1.838 7.931 13.221 hybrid contribution -0.374 1.061 0.780 1.369 sum 10.043 -0.777 8.712 13.317 Atomic orbital electron populations 1.69893 1.06164 1.27275 1.48725 1.25076 0.94797 0.98774 0.93799 0.87106 0.80513 0.84092 0.79458 1.19315 1.20893 1.18550 1.21293 0.88724 0.95189 1.50397 0.89982 1.19203 0.94366 0.90033 0.81288 0.94341 1.87719 1.89613 1.37948 1.16167 1.21984 0.99510 0.93464 0.84528 1.20473 1.03246 0.97621 0.89333 1.21282 0.91207 0.91547 0.95406 1.22042 1.01195 1.02016 0.93525 1.21568 0.96356 0.94312 0.97874 1.22093 0.99613 0.98653 1.00231 1.22761 0.96793 0.98085 0.88029 1.67532 1.17596 1.06445 1.27466 1.20235 0.92637 0.93673 0.96708 1.20873 1.00143 0.99268 0.94279 1.20921 1.00676 0.95276 0.97233 1.20882 1.03136 0.93595 0.98942 1.21057 1.00155 0.98877 0.94362 1.20944 0.98665 0.95320 0.97030 0.92260 0.93890 0.93490 0.89494 0.89560 0.84538 0.84966 0.85077 0.82943 0.87176 0.87031 0.87228 0.87044 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.45 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.86 21.01 27.33 -169.99 -4.65 16.36 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.13 6.21 56.52 0.35 -5.78 16 7 C -0.52 -14.59 9.17 -34.44 -0.32 -14.90 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.21 5.07 2.25 -29.03 -0.07 5.01 16 10 H 0.04 0.96 4.03 -51.93 -0.21 0.75 16 11 O -0.39 -9.06 9.12 -35.23 -0.32 -9.38 16 12 C 0.08 1.70 5.60 37.16 0.21 1.91 16 13 C -0.07 -1.12 5.98 -27.88 -0.17 -1.29 16 14 C 0.14 2.19 6.18 -82.59 -0.51 1.68 16 15 C -0.17 -2.12 9.71 -39.44 -0.38 -2.51 16 16 C -0.08 -0.80 10.18 -39.28 -0.40 -1.20 16 17 C -0.19 -1.95 10.11 -39.44 -0.40 -2.35 16 18 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 19 N -0.48 -7.62 9.88 -9.47 -0.09 -7.71 16 20 C -0.03 -0.72 4.99 -104.63 -0.52 -1.24 16 21 C -0.13 -2.64 9.68 -39.58 -0.38 -3.03 16 22 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.15 -2.46 10.05 -39.58 -0.40 -2.85 16 24 C -0.13 -2.22 10.05 -39.58 -0.40 -2.61 16 25 C -0.10 -2.08 9.35 -39.58 -0.37 -2.45 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.30 7.87 -51.93 -0.41 0.89 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.14 1.45 7.95 -52.49 -0.42 1.03 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 2.24 8.00 -52.49 -0.42 1.82 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.12 2.49 7.63 -52.48 -0.40 2.09 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -31.84 335.08 -9.29 -41.13 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.26 Total: 5.43 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -4.79 Total: -25.21 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.68 Total: -33.39 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.32 Total: -9.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.65 Total: 16.36 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.84 -9.29 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021805.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.531 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds