Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47226 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.46975 * 30.00444 * 3 2 1 6 6 H 1.48495 * 109.47047 * 149.99829 * 3 2 1 7 7 C 1.37878 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99764 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46976 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46880 * 60.00247 * 9 7 2 12 12 C 1.42899 * 113.99778 * 90.00138 * 11 9 7 13 13 C 1.52999 * 109.46889 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.38225 * 119.61675 * 124.99558 * 14 13 12 16 16 C 1.38634 * 119.16020 * 179.97438 * 15 14 13 17 17 C 1.38674 * 118.41957 * 0.02562 * 16 15 14 18 18 C 1.38178 * 119.16475 * 359.97438 * 17 16 15 19 19 N 1.31853 * 119.62013 * 304.73364 * 14 13 12 20 20 C 1.50704 * 109.47317 * 300.00404 * 9 7 2 21 21 C 1.38236 * 119.99963 * 84.72532 * 20 9 7 22 22 C 1.38234 * 119.99943 * 179.81212 * 21 20 9 23 23 C 1.38241 * 119.99959 * 0.39560 * 22 21 20 24 24 C 1.38235 * 119.99849 * 359.85917 * 23 22 21 25 25 C 1.38231 * 119.99901 * 265.00089 * 20 9 7 26 26 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99768 * 12 11 9 28 28 H 1.08997 * 109.47442 * 59.99964 * 12 11 9 29 29 H 1.08997 * 109.47286 * 300.00017 * 13 12 11 30 30 H 1.09008 * 109.47201 * 60.00236 * 13 12 11 31 31 H 1.08002 * 120.42115 * 359.96639 * 15 14 13 32 32 H 1.08002 * 120.78739 * 180.02562 * 16 15 14 33 33 H 1.07994 * 120.41385 * 180.02562 * 17 16 15 34 34 H 1.07996 * 119.61785 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.00029 * 359.97438 * 21 20 9 36 36 H 1.07999 * 120.00061 * 180.23112 * 22 21 20 37 37 H 1.08000 * 119.99939 * 179.83407 * 23 22 21 38 38 H 1.07998 * 120.00257 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00101 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4291 -2.5746 -1.1671 12 6 1.0737 -3.1704 -2.2947 13 6 0.1056 -3.1992 -3.4791 14 6 0.7855 -3.8270 -4.6685 15 6 0.2000 -4.9099 -5.2972 16 6 0.8334 -5.4797 -6.3908 17 6 2.0377 -4.9369 -6.8128 18 6 2.5625 -3.8535 -6.1344 19 7 1.9294 -3.3337 -5.1007 20 6 0.3851 -2.5793 1.2302 21 6 -0.8704 -2.0007 1.2308 22 6 -1.6663 -2.0775 2.3584 23 6 -1.2035 -2.7259 3.4882 24 6 0.0540 -3.2999 3.4894 25 6 0.8484 -3.2264 2.3604 26 1 -0.4850 0.8400 0.0004 27 1 1.9553 -2.5867 -2.5596 28 1 1.3733 -4.1885 -2.0460 29 1 -0.7757 -3.7831 -3.2139 30 1 -0.1943 -2.1812 -3.7281 31 1 -0.7389 -5.3071 -4.9408 32 1 0.3992 -6.3262 -6.9020 33 1 2.5584 -5.3552 -7.6614 34 1 3.4997 -3.4247 -6.4571 35 1 -1.2304 -1.4909 0.3494 36 1 -2.6486 -1.6288 2.3576 37 1 -1.8243 -2.7836 4.3701 38 1 0.4158 -3.8061 4.3721 39 1 1.8308 -3.6749 2.3613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = 18.305866 kcal Electronic energy + Delta-G solvation = -21270.212580 eV Core-core repulsion = 18142.929430 eV Total energy + Delta-G solvation = -3127.283150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09000 -38.19898 -36.36998 -33.57938 -32.47429 -32.16531 -30.41702 -29.59182 -28.52608 -26.57835 -23.81474 -23.29316 -22.60704 -21.35890 -20.84643 -20.03955 -16.90397 -16.59640 -16.16489 -15.80831 -15.36024 -15.09044 -14.57948 -14.46018 -14.00434 -13.70263 -13.37085 -13.22119 -12.93691 -12.67603 -12.49312 -12.16741 -11.67565 -11.57515 -11.42732 -11.19832 -10.92968 -10.71046 -10.52401 -10.21778 -10.02634 -9.82948 -9.62999 -9.24635 -9.14595 -8.86666 -8.66179 -8.02060 -7.67957 -7.36933 -5.88632 -4.21181 1.16614 1.33114 2.53810 2.69204 3.30373 3.36482 3.39454 3.86692 4.39455 4.41062 4.66470 4.84034 5.04982 5.09182 5.14581 5.22071 5.38615 5.65267 5.68192 5.82188 5.86533 5.96579 6.04503 6.13215 6.16862 6.22074 6.25948 6.43878 6.57622 6.69501 6.76849 6.84797 6.92118 7.00713 7.19354 7.36386 7.58037 7.70685 7.92774 8.11079 8.14298 8.15820 8.37868 8.61972 9.02492 9.53910 10.95893 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.004722 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.069886 B = 5928.643910 C = 7088.055658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.085 3.915 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.247 3.753 10 H 0.015 0.985 11 O -0.371 6.371 12 C 0.084 3.916 13 C -0.069 4.069 14 C 0.146 3.854 15 C -0.173 4.173 16 C -0.076 4.076 17 C -0.189 4.189 18 C 0.102 3.898 19 N -0.476 5.476 20 C -0.040 4.040 21 C -0.043 4.043 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.131 4.131 26 H 0.261 0.739 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 -9.059 -8.297 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.120 4.120 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.077 0.923 9 C 0.191 3.809 10 H 0.033 0.967 11 O -0.290 6.290 12 C 0.006 3.994 13 C -0.107 4.107 14 C 0.009 3.991 15 C -0.193 4.193 16 C -0.102 4.102 17 C -0.209 4.209 18 C -0.056 4.056 19 N -0.185 5.185 20 C -0.040 4.040 21 C -0.062 4.062 22 C -0.173 4.173 23 C -0.166 4.166 24 C -0.169 4.169 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.721 -8.136 -7.872 11.343 hybrid contribution 0.516 0.194 -0.313 0.633 sum -0.205 -7.942 -8.185 11.407 Atomic orbital electron populations 1.69811 1.05768 1.25812 1.47023 1.24957 0.94740 0.99021 0.93309 0.86641 0.80024 0.83386 0.78227 1.20417 1.21074 1.19913 1.21431 0.92910 0.90903 1.52584 0.92258 1.18521 0.86891 0.94577 0.80906 0.96658 1.87959 1.40408 1.81077 1.19567 1.21894 0.95214 0.95333 0.86965 1.20469 0.97846 1.01864 0.90506 1.21394 0.90654 0.91745 0.95316 1.22035 1.01880 0.97882 0.97498 1.21544 0.94633 0.98604 0.95465 1.22083 0.97587 0.99080 1.02160 1.22797 0.98897 0.92830 0.91038 1.67590 1.08315 1.29985 1.12638 1.20021 0.94350 0.94166 0.95510 1.21879 0.92761 0.92275 0.99306 1.21157 0.99665 1.01720 0.94802 1.20809 0.96427 1.01473 0.97847 1.20690 0.95399 1.03176 0.97653 1.20796 0.98925 1.01326 0.93843 0.92866 0.92856 0.96270 0.90165 0.89076 0.84753 0.85140 0.85191 0.82958 0.81792 0.88088 0.88358 0.88090 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.00 8.50 55.43 0.47 -22.53 16 2 C 0.09 2.30 5.24 -17.82 -0.09 2.21 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.78 8.89 -34.44 -0.31 -15.08 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.25 6.25 2.59 -29.03 -0.08 6.17 16 10 H 0.02 0.38 7.70 -51.93 -0.40 -0.02 16 11 O -0.37 -9.09 8.53 -35.23 -0.30 -9.39 16 12 C 0.08 1.75 5.60 37.16 0.21 1.96 16 13 C -0.07 -1.20 5.98 -27.88 -0.17 -1.36 16 14 C 0.15 2.29 6.17 -82.59 -0.51 1.78 16 15 C -0.17 -2.16 9.71 -39.44 -0.38 -2.54 16 16 C -0.08 -0.80 10.18 -39.27 -0.40 -1.20 16 17 C -0.19 -1.98 10.11 -39.44 -0.40 -2.38 16 18 C 0.10 1.30 11.18 -17.55 -0.20 1.10 16 19 N -0.48 -7.81 9.89 -9.47 -0.09 -7.91 16 20 C -0.04 -0.98 4.80 -104.62 -0.50 -1.48 16 21 C -0.04 -1.05 7.46 -39.58 -0.30 -1.34 16 22 C -0.16 -3.32 10.05 -39.58 -0.40 -3.72 16 23 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 24 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 25 C -0.13 -2.88 9.68 -39.58 -0.38 -3.27 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.05 1.21 7.95 -51.93 -0.41 0.80 16 28 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.13 1.39 7.95 -52.49 -0.42 0.97 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.17 4.28 5.50 -52.49 -0.29 3.99 16 36 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -29.97 331.25 -9.92 -39.89 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.27 Total: 4.64 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -4.70 Total: -25.88 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.38 Total: -30.44 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.30 Total: -9.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.97 -9.92 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.195 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds