Wall clock time and date at job start Tue Mar 31 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47226 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.46975 * 30.00444 * 3 2 1 6 6 H 1.48495 * 109.47047 * 149.99829 * 3 2 1 7 7 C 1.37878 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99764 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46976 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46880 * 60.00247 * 9 7 2 12 12 C 1.42899 * 113.99778 * 90.00138 * 11 9 7 13 13 C 1.52999 * 109.46889 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.38225 * 119.61675 * 124.99558 * 14 13 12 16 16 C 1.38634 * 119.16020 * 179.97438 * 15 14 13 17 17 C 1.38674 * 118.41957 * 0.02562 * 16 15 14 18 18 C 1.38178 * 119.16475 * 359.97438 * 17 16 15 19 19 N 1.31853 * 119.62013 * 304.73364 * 14 13 12 20 20 C 1.50704 * 109.47317 * 300.00404 * 9 7 2 21 21 C 1.38236 * 119.99963 * 84.72532 * 20 9 7 22 22 C 1.38234 * 119.99943 * 179.81212 * 21 20 9 23 23 C 1.38241 * 119.99959 * 0.39560 * 22 21 20 24 24 C 1.38235 * 119.99849 * 359.85917 * 23 22 21 25 25 C 1.38231 * 119.99901 * 265.00089 * 20 9 7 26 26 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99768 * 12 11 9 28 28 H 1.08997 * 109.47442 * 59.99964 * 12 11 9 29 29 H 1.08997 * 109.47286 * 300.00017 * 13 12 11 30 30 H 1.09008 * 109.47201 * 60.00236 * 13 12 11 31 31 H 1.08002 * 120.42115 * 359.96639 * 15 14 13 32 32 H 1.08002 * 120.78739 * 180.02562 * 16 15 14 33 33 H 1.07994 * 120.41385 * 180.02562 * 17 16 15 34 34 H 1.07996 * 119.61785 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.00029 * 359.97438 * 21 20 9 36 36 H 1.07999 * 120.00061 * 180.23112 * 22 21 20 37 37 H 1.08000 * 119.99939 * 179.83407 * 23 22 21 38 38 H 1.07998 * 120.00257 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00101 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4291 -2.5746 -1.1671 12 6 1.0737 -3.1704 -2.2947 13 6 0.1056 -3.1992 -3.4791 14 6 0.7855 -3.8270 -4.6685 15 6 0.2000 -4.9099 -5.2972 16 6 0.8334 -5.4797 -6.3908 17 6 2.0377 -4.9369 -6.8128 18 6 2.5625 -3.8535 -6.1344 19 7 1.9294 -3.3337 -5.1007 20 6 0.3851 -2.5793 1.2302 21 6 -0.8704 -2.0007 1.2308 22 6 -1.6663 -2.0775 2.3584 23 6 -1.2035 -2.7259 3.4882 24 6 0.0540 -3.2999 3.4894 25 6 0.8484 -3.2264 2.3604 26 1 -0.4850 0.8400 0.0004 27 1 1.9553 -2.5867 -2.5596 28 1 1.3733 -4.1885 -2.0460 29 1 -0.7757 -3.7831 -3.2139 30 1 -0.1943 -2.1812 -3.7281 31 1 -0.7389 -5.3071 -4.9408 32 1 0.3992 -6.3262 -6.9020 33 1 2.5584 -5.3552 -7.6614 34 1 3.4997 -3.4247 -6.4571 35 1 -1.2304 -1.4909 0.3494 36 1 -2.6486 -1.6288 2.3576 37 1 -1.8243 -2.7836 4.3701 38 1 0.4158 -3.8061 4.3721 39 1 1.8308 -3.6749 2.3613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055021807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:46 Heat of formation + Delta-G solvation = 2.752775 kcal Electronic energy + Delta-G solvation = -21270.887013 eV Core-core repulsion = 18142.929430 eV Total energy + Delta-G solvation = -3127.957583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10251 -39.93744 -38.13606 -35.16430 -34.04391 -33.22815 -32.13805 -31.27280 -29.85709 -28.50314 -25.21273 -24.55660 -24.15029 -22.96888 -22.22780 -21.77245 -18.72698 -17.80021 -17.45755 -17.18578 -16.96181 -16.59772 -16.09293 -16.06252 -15.69592 -15.14164 -15.01267 -14.50432 -14.34501 -14.05474 -13.83898 -13.75667 -13.37496 -13.21509 -12.96666 -12.81842 -12.51202 -12.46395 -12.37179 -11.92702 -11.79575 -11.39512 -11.05651 -10.79090 -10.70655 -10.28789 -9.90555 -9.85510 -9.39884 -9.15289 -7.90023 -6.32270 0.19130 0.41991 0.83498 1.01207 1.37797 1.39360 1.47391 2.39742 2.83083 3.06208 3.29260 3.36862 3.52802 3.99380 4.04831 4.19337 4.28167 4.29124 4.35864 4.39555 4.48538 4.55889 4.60826 4.66124 4.75818 4.87270 4.90408 5.08110 5.12283 5.18663 5.24065 5.29330 5.33073 5.48377 5.63346 5.69809 5.85076 5.89821 6.06614 6.17578 6.37935 6.53846 6.65256 7.08791 7.14115 7.45656 8.89902 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.004722 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.069886 B = 5928.643910 C = 7088.055658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.568 4.568 8 H 0.046 0.954 9 C 0.245 3.755 10 H 0.009 0.991 11 O -0.386 6.386 12 C 0.087 3.913 13 C -0.057 4.057 14 C 0.114 3.886 15 C -0.172 4.172 16 C -0.072 4.072 17 C -0.173 4.173 18 C 0.081 3.919 19 N -0.523 5.523 20 C -0.068 4.068 21 C -0.065 4.065 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.145 4.145 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -10.643 -8.274 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.158 4.158 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.064 0.936 9 C 0.189 3.811 10 H 0.027 0.973 11 O -0.306 6.306 12 C 0.009 3.991 13 C -0.095 4.095 14 C -0.023 4.023 15 C -0.192 4.192 16 C -0.098 4.098 17 C -0.192 4.192 18 C -0.076 4.076 19 N -0.233 5.233 20 C -0.068 4.068 21 C -0.084 4.084 22 C -0.179 4.179 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.289 -9.728 -7.850 12.567 hybrid contribution 0.708 0.579 -0.370 0.987 sum -0.581 -9.149 -8.221 12.313 Atomic orbital electron populations 1.70011 1.06372 1.26141 1.46878 1.25559 0.95622 1.01446 0.93159 0.85810 0.79017 0.80226 0.78050 1.20458 1.20281 1.19774 1.21615 0.92543 0.92516 1.53832 0.93554 1.18487 0.87203 0.93478 0.81897 0.97304 1.87923 1.40796 1.81621 1.20268 1.21946 0.95247 0.94652 0.87205 1.20301 0.97743 1.01278 0.90178 1.21149 0.91552 0.93772 0.95798 1.22251 1.02521 0.96609 0.97789 1.22039 0.94261 0.99071 0.94409 1.22517 0.97294 0.97342 1.02096 1.23234 0.99645 0.94018 0.90664 1.67446 1.09364 1.31863 1.14675 1.20083 0.94826 0.96051 0.95884 1.21671 0.93454 0.93531 0.99747 1.21409 1.00240 1.01755 0.94466 1.21252 0.96649 0.99538 0.98356 1.21130 0.95036 1.02160 0.97902 1.21037 0.99872 1.01372 0.94003 0.92985 0.95750 0.95609 0.88541 0.91426 0.82785 0.81126 0.81306 0.81227 0.84458 0.86058 0.84297 0.84255 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.26 8.50 21.45 0.18 -48.08 16 2 C 0.05 2.59 5.24 84.65 0.44 3.03 16 3 Si 0.94 44.73 29.54 68.60 2.03 46.76 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.57 -32.58 8.89 25.60 0.23 -32.35 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 9 C 0.25 13.10 2.59 29.10 0.08 13.18 16 10 H 0.01 0.47 7.70 -2.39 -0.02 0.45 16 11 O -0.39 -20.18 8.53 -148.98 -1.27 -21.45 16 12 C 0.09 3.90 5.60 71.98 0.40 4.31 16 13 C -0.06 -2.11 5.98 29.85 0.18 -1.93 16 14 C 0.11 3.66 6.17 42.55 0.26 3.92 16 15 C -0.17 -4.06 9.71 22.36 0.22 -3.84 16 16 C -0.07 -1.28 10.18 22.47 0.23 -1.05 16 17 C -0.17 -3.11 10.11 22.36 0.23 -2.89 16 18 C 0.08 2.03 11.18 84.67 0.95 2.98 16 19 N -0.52 -17.82 9.89 -183.89 -1.82 -19.64 16 20 C -0.07 -3.41 4.80 -19.87 -0.10 -3.51 16 21 C -0.07 -3.22 7.46 22.27 0.17 -3.05 16 22 C -0.16 -6.67 10.05 22.27 0.22 -6.45 16 23 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 24 C -0.14 -5.36 10.05 22.27 0.22 -5.14 16 25 C -0.14 -6.33 9.68 22.27 0.22 -6.12 16 26 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.02 1.21 7.95 -2.39 -0.02 1.19 16 28 H 0.03 1.09 8.09 -2.39 -0.02 1.08 16 29 H 0.10 3.12 7.87 -2.39 -0.02 3.10 16 30 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.15 2.89 7.95 -2.91 -0.02 2.86 16 32 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.14 7.51 5.50 -2.91 -0.02 7.49 16 36 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -68.74 331.25 4.32 -64.42 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.03 Total: 21.76 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 4.17 Total: -43.77 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.64 Total: -67.71 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.27 Total: -21.45 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.74 4.32 -64.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.174 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds