Wall clock time and date at job start Tue Mar 31 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50699 * 109.47408 * 2 1 4 4 C 1.33388 * 125.20747 * 90.00089 * 3 2 1 5 5 C 1.38422 * 114.92073 * 179.79409 * 4 3 2 6 6 C 1.33382 * 114.92367 * 0.42768 * 5 4 3 7 7 C 1.50704 * 125.20666 * 179.86116 * 6 5 4 8 8 N 1.46894 * 109.47198 * 89.71517 * 7 6 5 9 9 C 1.46903 * 111.00003 * 190.00051 * 8 7 6 10 10 C 1.50697 * 109.46768 * 71.87145 * 9 8 7 11 11 H 1.08004 * 119.99919 * 359.91609 * 10 9 8 12 12 C 1.37875 * 119.99747 * 179.91552 * 10 9 8 13 13 N 1.31509 * 120.00339 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99976 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47538 * 89.99657 * 14 12 10 16 16 H 1.48498 * 109.47150 * 210.00329 * 14 12 10 17 17 H 1.48504 * 109.47007 * 329.99658 * 14 12 10 18 18 C 1.46907 * 110.99698 * 66.05139 * 8 7 6 19 19 C 1.53001 * 109.47170 * 199.22366 * 18 8 7 20 20 O 1.42900 * 109.46905 * 64.06967 * 19 18 8 21 21 C 1.42904 * 113.99649 * 179.97438 * 20 19 18 22 22 S 1.75886 * 109.59428 * 359.59582 * 6 5 4 23 23 H 1.09002 * 109.47175 * 59.99918 * 1 2 3 24 24 H 1.08999 * 109.47637 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47095 * 300.00550 * 1 2 3 26 26 H 1.08998 * 109.47128 * 239.99608 * 2 1 3 27 27 H 1.09002 * 109.47175 * 120.00082 * 2 1 3 28 28 H 1.07998 * 122.53299 * 0.02562 * 4 3 2 29 29 H 1.08005 * 122.53433 * 180.27293 * 5 4 3 30 30 H 1.09009 * 109.46567 * 329.72129 * 7 6 5 31 31 H 1.08995 * 109.47426 * 209.72247 * 7 6 5 32 32 H 1.09000 * 109.46768 * 191.87059 * 9 8 7 33 33 H 1.08995 * 109.47395 * 311.86976 * 9 8 7 34 34 H 0.96998 * 120.00620 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47184 * 319.22429 * 18 8 7 36 36 H 1.08997 * 109.46897 * 79.22488 * 18 8 7 37 37 H 1.08998 * 109.47098 * 184.07336 * 19 18 8 38 38 H 1.09005 * 109.47003 * 304.07455 * 19 18 8 39 39 H 1.09005 * 109.46757 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47470 * 300.00104 * 21 20 19 41 41 H 1.08999 * 109.47327 * 60.00655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1458 1.0899 5 6 2.7470 3.4284 0.8427 6 6 2.8543 3.7479 -0.4478 7 6 3.3249 5.0781 -0.9773 8 7 4.7834 5.0484 -1.1494 9 6 5.3073 6.3907 -1.4354 10 6 5.2372 7.2335 -0.1881 11 1 4.8417 6.8143 0.7253 12 6 5.6780 8.5396 -0.2131 13 7 6.1601 9.0499 -1.3252 14 14 5.5918 9.5842 1.3332 15 1 6.8530 9.4345 2.1027 16 1 5.4068 11.0091 0.9583 17 1 4.4470 9.1393 2.1679 18 6 5.1702 4.0974 -2.2002 19 6 6.6467 3.7305 -2.0377 20 8 6.8340 3.0478 -0.7963 21 6 8.1858 2.6581 -0.5456 22 16 2.3697 2.3769 -1.4373 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.1527 1.7600 2.0894 29 1 2.9963 4.1188 1.6349 30 1 3.0583 5.8649 -0.2715 31 1 2.8496 5.2755 -1.9381 32 1 6.3436 6.3137 -1.7642 33 1 4.7103 6.8539 -2.2209 34 1 6.4698 9.9689 -1.3429 35 1 4.5610 3.1973 -2.1178 36 1 5.0146 4.5533 -3.1779 37 1 6.9524 3.0821 -2.8587 38 1 7.2499 4.6384 -2.0476 39 1 8.2442 2.1468 0.4153 40 1 8.5230 1.9873 -1.3356 41 1 8.8213 3.5434 -0.5247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071230686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:22 Heat of formation + Delta-G solvation = -17.733468 kcal Electronic energy + Delta-G solvation = -20351.983156 eV Core-core repulsion = 17358.581174 eV Total energy + Delta-G solvation = -2993.401982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.17424 -37.46872 -36.12472 -33.68913 -32.53216 -30.10735 -28.85194 -26.69629 -25.88725 -24.80623 -22.89443 -22.43753 -21.91974 -20.04190 -18.28247 -16.64548 -16.52382 -15.90172 -15.48448 -15.08141 -14.80710 -14.48212 -14.20171 -14.06994 -13.81282 -13.41854 -13.05087 -12.64719 -12.28862 -12.05812 -11.95268 -11.81006 -11.60790 -11.39678 -11.31154 -11.18608 -11.01880 -10.78263 -10.70872 -10.49786 -10.30134 -10.26742 -9.82448 -9.22750 -9.08372 -8.41995 -8.10059 -8.02327 -7.20359 -6.01629 -4.02270 1.36284 1.94963 2.34927 3.15728 3.33480 3.39385 3.43259 4.32540 4.44590 4.81432 4.97804 5.01370 5.23862 5.32556 5.34774 5.50847 5.52899 5.65691 5.71649 5.75876 5.78571 5.81194 5.84619 5.95402 5.97829 6.05293 6.08517 6.13528 6.17092 6.40798 6.48828 6.55822 6.78761 6.94660 7.21519 7.29496 7.69898 7.85133 8.09329 8.19428 8.55044 9.05694 9.61884 11.09089 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.004985 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.891901 B = 5615.819121 C = 6489.562116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C -0.191 4.191 4 C -0.128 4.128 5 C -0.128 4.128 6 C -0.138 4.138 7 C 0.130 3.870 8 N -0.517 5.517 9 C 0.192 3.808 10 C -0.502 4.502 11 H 0.064 0.936 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.897 3.103 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.046 3.954 19 C 0.073 3.927 20 O -0.368 6.368 21 C 0.033 3.967 22 S 0.069 5.931 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.033 0.967 33 H -0.008 1.008 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -16.188 0.070 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.308 4.308 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.255 4.255 7 C 0.000 4.000 8 N -0.242 5.242 9 C 0.067 3.933 10 C -0.541 4.541 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.083 4.083 19 C -0.004 4.004 20 O -0.286 6.286 21 C -0.064 4.064 22 S 0.332 5.668 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.121 0.879 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.048 -16.457 -0.994 17.562 hybrid contribution 0.233 1.295 1.331 1.872 sum -5.816 -15.162 0.337 16.242 Atomic orbital electron populations 1.21785 0.94779 1.01451 1.02421 1.20006 0.95764 0.90279 1.02698 1.24310 1.10120 1.00475 0.95876 1.20017 1.02783 0.94391 0.98692 1.20036 1.02588 0.96781 0.96354 1.24583 1.05539 0.99360 0.96066 1.20534 0.89289 0.90869 0.99325 1.62095 1.08321 1.10631 1.43168 1.19808 0.95059 0.82119 0.96303 1.21155 1.40873 0.95470 0.96581 0.91762 1.24972 0.95488 0.97891 0.96227 1.69950 1.42764 1.15058 1.26272 0.86517 0.78504 0.79268 0.83242 1.20701 1.21403 1.19812 1.22224 0.95164 0.97339 0.93573 1.22516 0.97294 0.95370 0.85257 1.88017 1.25366 1.76300 1.38924 1.22644 0.84854 0.98550 1.00390 1.84008 1.65572 1.06544 1.10628 0.92551 0.92478 0.92394 0.91252 0.90479 0.85095 0.84291 0.87882 0.95293 0.94936 0.99046 0.92985 0.90833 0.94351 0.94439 0.92694 0.90357 0.95213 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.15 0.37 -0.96 16 2 C -0.05 -0.50 6.43 -27.89 -0.18 -0.68 16 3 C -0.19 -2.60 5.76 -36.00 -0.21 -2.81 16 4 C -0.13 -1.85 10.05 -41.21 -0.41 -2.26 16 5 C -0.13 -2.14 10.05 -41.21 -0.41 -2.55 16 6 C -0.14 -2.43 5.32 -36.00 -0.19 -2.62 16 7 C 0.13 2.58 5.30 -4.98 -0.03 2.55 16 8 N -0.52 -11.36 4.31 -237.51 -1.02 -12.38 16 9 C 0.19 4.94 4.56 -4.98 -0.02 4.92 16 10 C -0.50 -13.99 8.45 -34.44 -0.29 -14.28 16 11 H 0.06 1.79 7.57 -52.48 -0.40 1.39 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 14 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.05 0.88 5.23 -3.82 -0.02 0.86 16 19 C 0.07 1.32 6.11 37.16 0.23 1.55 16 20 O -0.37 -7.04 10.64 -35.23 -0.37 -7.42 16 21 C 0.03 0.48 11.01 101.05 1.11 1.60 16 22 S 0.07 1.03 21.42 -107.50 -2.30 -1.27 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.14 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.10 2.18 7.10 -51.92 -0.37 1.82 16 31 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.03 0.89 6.46 -51.93 -0.34 0.56 16 33 H -0.01 -0.22 8.05 -51.93 -0.42 -0.64 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.33 5.15 -51.93 -0.27 1.06 16 36 H 0.04 0.71 8.01 -51.93 -0.42 0.29 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 1.09 6.63 -51.93 -0.34 0.74 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -30.46 348.94 -9.64 -40.10 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.75 Total: -1.92 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.16 Total: -13.21 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.29 Total: -38.17 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.37 Total: -7.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.30 Total: -1.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.46 -9.64 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071230686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.365 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds