Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50699 * 109.47408 * 2 1 4 4 C 1.33388 * 125.20747 * 90.00089 * 3 2 1 5 5 C 1.38422 * 114.92073 * 179.79409 * 4 3 2 6 6 C 1.33382 * 114.92367 * 0.42768 * 5 4 3 7 7 C 1.50704 * 125.20666 * 179.86116 * 6 5 4 8 8 N 1.46894 * 109.47198 * 89.71517 * 7 6 5 9 9 C 1.46903 * 111.00003 * 190.00051 * 8 7 6 10 10 C 1.50697 * 109.46768 * 71.87145 * 9 8 7 11 11 H 1.08004 * 119.99919 * 359.91609 * 10 9 8 12 12 C 1.37875 * 119.99747 * 179.91552 * 10 9 8 13 13 N 1.31509 * 120.00339 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99976 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47538 * 89.99657 * 14 12 10 16 16 H 1.48498 * 109.47150 * 210.00329 * 14 12 10 17 17 H 1.48504 * 109.47007 * 329.99658 * 14 12 10 18 18 C 1.46907 * 110.99698 * 66.05139 * 8 7 6 19 19 C 1.53001 * 109.47170 * 199.22366 * 18 8 7 20 20 O 1.42900 * 109.46905 * 64.06967 * 19 18 8 21 21 C 1.42904 * 113.99649 * 179.97438 * 20 19 18 22 22 S 1.75886 * 109.59428 * 359.59582 * 6 5 4 23 23 H 1.09002 * 109.47175 * 59.99918 * 1 2 3 24 24 H 1.08999 * 109.47637 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47095 * 300.00550 * 1 2 3 26 26 H 1.08998 * 109.47128 * 239.99608 * 2 1 3 27 27 H 1.09002 * 109.47175 * 120.00082 * 2 1 3 28 28 H 1.07998 * 122.53299 * 0.02562 * 4 3 2 29 29 H 1.08005 * 122.53433 * 180.27293 * 5 4 3 30 30 H 1.09009 * 109.46567 * 329.72129 * 7 6 5 31 31 H 1.08995 * 109.47426 * 209.72247 * 7 6 5 32 32 H 1.09000 * 109.46768 * 191.87059 * 9 8 7 33 33 H 1.08995 * 109.47395 * 311.86976 * 9 8 7 34 34 H 0.96998 * 120.00620 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47184 * 319.22429 * 18 8 7 36 36 H 1.08997 * 109.46897 * 79.22488 * 18 8 7 37 37 H 1.08998 * 109.47098 * 184.07336 * 19 18 8 38 38 H 1.09005 * 109.47003 * 304.07455 * 19 18 8 39 39 H 1.09005 * 109.46757 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47470 * 300.00104 * 21 20 19 41 41 H 1.08999 * 109.47327 * 60.00655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1458 1.0899 5 6 2.7470 3.4284 0.8427 6 6 2.8543 3.7479 -0.4478 7 6 3.3249 5.0781 -0.9773 8 7 4.7834 5.0484 -1.1494 9 6 5.3073 6.3907 -1.4354 10 6 5.2372 7.2335 -0.1881 11 1 4.8417 6.8143 0.7253 12 6 5.6780 8.5396 -0.2131 13 7 6.1601 9.0499 -1.3252 14 14 5.5918 9.5842 1.3332 15 1 6.8530 9.4345 2.1027 16 1 5.4068 11.0091 0.9583 17 1 4.4470 9.1393 2.1679 18 6 5.1702 4.0974 -2.2002 19 6 6.6467 3.7305 -2.0377 20 8 6.8340 3.0478 -0.7963 21 6 8.1858 2.6581 -0.5456 22 16 2.3697 2.3769 -1.4373 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.1527 1.7600 2.0894 29 1 2.9963 4.1188 1.6349 30 1 3.0583 5.8649 -0.2715 31 1 2.8496 5.2755 -1.9381 32 1 6.3436 6.3137 -1.7642 33 1 4.7103 6.8539 -2.2209 34 1 6.4698 9.9689 -1.3429 35 1 4.5610 3.1973 -2.1178 36 1 5.0146 4.5533 -3.1779 37 1 6.9524 3.0821 -2.8587 38 1 7.2499 4.6384 -2.0476 39 1 8.2442 2.1468 0.4153 40 1 8.5230 1.9873 -1.3356 41 1 8.8213 3.5434 -0.5247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071230686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -35.941775 kcal Electronic energy + Delta-G solvation = -20352.772727 eV Core-core repulsion = 17358.581174 eV Total energy + Delta-G solvation = -2994.191553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.62237 -38.76149 -37.64791 -34.94085 -34.41251 -31.47467 -30.51825 -28.32148 -27.11472 -26.25774 -24.45123 -23.96874 -22.98970 -21.69855 -19.53813 -18.58850 -17.86526 -17.38402 -16.98557 -16.69491 -16.19786 -16.04444 -15.60009 -15.29234 -14.89728 -14.85026 -14.49765 -13.91118 -13.89799 -13.56728 -13.44966 -13.10149 -12.99837 -12.75726 -12.64073 -12.58605 -12.48029 -12.39516 -12.08404 -12.01691 -11.81482 -11.63282 -11.44909 -11.28513 -10.61708 -10.45454 -9.33555 -9.24778 -8.96988 -8.19145 -6.28116 0.14300 0.74497 1.13161 1.40718 1.41810 1.52928 1.92423 2.40827 2.98432 3.13032 3.34263 3.86261 3.94587 4.12720 4.25917 4.28595 4.31923 4.48552 4.51943 4.53983 4.59398 4.61092 4.65842 4.76162 4.81035 4.86530 4.90308 4.95031 5.04828 5.12026 5.16067 5.20787 5.38387 5.39225 5.54412 5.66782 5.73230 6.06448 6.31243 6.37395 6.62642 6.86654 7.40982 8.91485 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.004985 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.891901 B = 5615.819121 C = 6489.562116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.173 4.173 4 C -0.143 4.143 5 C -0.128 4.128 6 C -0.173 4.173 7 C 0.136 3.864 8 N -0.525 5.525 9 C 0.209 3.791 10 C -0.517 4.517 11 H 0.059 0.941 12 C 0.005 3.995 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.265 1.265 18 C 0.044 3.956 19 C 0.076 3.924 20 O -0.396 6.396 21 C 0.028 3.972 22 S 0.082 5.918 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.010 0.990 33 H -0.035 1.035 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 -18.489 1.047 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.290 4.290 4 C -0.172 4.172 5 C -0.158 4.158 6 C -0.290 4.290 7 C 0.006 3.994 8 N -0.250 5.250 9 C 0.083 3.917 10 C -0.555 4.555 11 H 0.077 0.923 12 C -0.193 4.193 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.085 4.085 19 C -0.001 4.001 20 O -0.315 6.315 21 C -0.069 4.069 22 S 0.346 5.654 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.174 0.826 29 H 0.148 0.852 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.028 0.972 33 H -0.017 1.017 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.681 -18.777 -0.019 19.930 hybrid contribution 0.410 1.892 1.011 2.184 sum -6.271 -16.885 0.993 18.040 Atomic orbital electron populations 1.21771 0.93589 1.02825 1.01999 1.20191 0.96665 0.87995 1.04066 1.24828 1.07866 1.01625 0.94678 1.20175 1.03353 0.93414 1.00274 1.20209 1.01953 0.97839 0.95841 1.24300 1.08127 0.99493 0.97124 1.20331 0.88084 0.92187 0.98752 1.62025 1.09740 1.08830 1.44356 1.19431 0.93450 0.84043 0.94748 1.21409 1.40900 0.96247 0.96990 0.92316 1.25827 0.94904 0.99115 0.99451 1.70067 1.43471 1.15547 1.28360 0.85450 0.78787 0.77509 0.79291 1.20069 1.20684 1.18967 1.22331 0.96302 0.97020 0.92836 1.22475 0.96063 0.95142 0.86410 1.87959 1.27865 1.76363 1.39337 1.22847 0.82875 0.98874 1.02270 1.83880 1.65264 1.05351 1.10878 0.93307 0.90261 0.92537 0.90336 0.88635 0.82587 0.85208 0.90250 0.95375 0.97170 1.01713 0.92731 0.89433 0.94076 0.90949 0.95199 0.88781 0.92533 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.41 16 2 C -0.05 -0.86 6.43 29.84 0.19 -0.66 16 3 C -0.17 -4.27 5.76 24.59 0.14 -4.13 16 4 C -0.14 -3.82 10.05 21.22 0.21 -3.61 16 5 C -0.13 -4.24 10.05 21.21 0.21 -4.03 16 6 C -0.17 -6.14 5.32 24.59 0.13 -6.00 16 7 C 0.14 5.64 5.30 85.56 0.45 6.10 16 8 N -0.53 -23.91 4.31 -905.36 -3.90 -27.81 16 9 C 0.21 11.33 4.56 85.56 0.39 11.72 16 10 C -0.52 -29.84 8.45 25.60 0.22 -29.62 16 11 H 0.06 3.38 7.57 -2.91 -0.02 3.36 16 12 C 0.00 0.28 5.46 84.66 0.46 0.75 16 13 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 14 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 C 0.04 1.69 5.23 86.30 0.45 2.14 16 19 C 0.08 2.76 6.11 71.98 0.44 3.20 16 20 O -0.40 -14.93 10.64 -148.98 -1.58 -16.51 16 21 C 0.03 0.78 11.01 113.37 1.25 2.03 16 22 S 0.08 2.37 21.42 -56.49 -1.21 1.16 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.08 3.58 7.10 -2.38 -0.02 3.56 16 31 H 0.03 1.14 8.12 -2.39 -0.02 1.12 16 32 H 0.01 0.60 6.46 -2.39 -0.02 0.58 16 33 H -0.03 -2.02 8.05 -2.39 -0.02 -2.04 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 35 H 0.09 3.13 5.15 -2.39 -0.01 3.11 16 36 H 0.04 1.55 8.01 -2.39 -0.02 1.53 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.03 1.22 6.63 -2.38 -0.02 1.21 16 39 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -66.80 348.94 1.87 -64.93 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.99 Total: 10.88 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 5.26 Total: -23.54 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.62 Total: -83.93 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.58 Total: -16.51 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.21 Total: 1.16 kcal Total: -66.80 1.87 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071230686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.992 kcal (2) G-P(sol) polarization free energy of solvation -66.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds