Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38291 * 119.94390 * 2 1 4 4 C 1.38124 * 120.05417 * 180.02562 * 3 2 1 5 5 C 1.38753 * 119.94599 * 359.97438 * 4 3 2 6 6 O 1.35901 * 120.05353 * 179.97438 * 5 4 3 7 7 C 1.38708 * 119.88689 * 0.02562 * 5 4 3 8 8 C 1.50696 * 120.02643 * 179.97438 * 7 5 4 9 9 N 1.46501 * 109.47343 * 284.99824 * 8 7 5 10 10 C 1.38854 * 120.00629 * 179.97438 * 9 8 7 11 11 C 1.39566 * 119.84597 * 179.97438 * 10 9 8 12 12 C 1.36338 * 120.16116 * 180.25508 * 11 10 9 13 13 C 1.40893 * 119.83636 * 359.50729 * 12 11 10 14 14 C 1.41133 * 120.15364 * 180.25178 * 13 12 11 15 15 H 1.07994 * 120.00344 * 24.83920 * 14 13 12 16 16 C 1.39866 * 119.99916 * 204.83980 * 14 13 12 17 17 N 1.30910 * 119.99864 * 17.95871 * 16 14 13 18 18 Si 1.86802 * 120.00165 * 197.96719 * 16 14 13 19 19 H 1.48492 * 109.47275 * 59.99742 * 18 16 14 20 20 H 1.48502 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46916 * 299.99642 * 18 16 14 22 22 C 1.40883 * 119.68755 * 0.47142 * 13 12 11 23 23 C 1.36338 * 119.83541 * 359.77859 * 22 13 12 24 24 C 1.38163 * 119.94699 * 0.25346 * 7 5 4 25 25 H 1.09002 * 109.47049 * 89.99745 * 1 2 3 26 26 H 1.08998 * 109.46918 * 210.00347 * 1 2 3 27 27 H 1.09001 * 109.47237 * 330.00146 * 1 2 3 28 28 H 1.08000 * 119.97545 * 359.97137 * 3 2 1 29 29 H 1.08003 * 120.02230 * 179.97438 * 4 3 2 30 30 H 0.96697 * 113.99638 * 270.01636 * 6 5 4 31 31 H 1.09007 * 109.47283 * 164.99849 * 8 7 5 32 32 H 1.09002 * 109.47280 * 45.00013 * 8 7 5 33 33 H 0.97005 * 119.99646 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.91752 * 359.97438 * 11 10 9 35 35 H 1.07995 * 120.08351 * 179.74617 * 12 11 10 36 36 H 0.97001 * 120.00040 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.07962 * 179.76054 * 22 13 12 38 38 H 1.08005 * 119.92015 * 179.97438 * 23 22 13 39 39 H 1.07996 * 119.97593 * 179.74849 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6325 0.0001 -0.0016 7 6 3.5787 -1.2005 -0.0005 8 6 4.3303 -2.5067 -0.0011 9 7 4.8832 -2.7514 -1.3355 10 6 5.6213 -3.9016 -1.5811 11 6 6.1460 -4.1317 -2.8538 12 6 6.8673 -5.2614 -3.1034 13 6 7.0913 -6.1926 -2.0701 14 6 7.8416 -7.3617 -2.3197 15 1 8.5638 -7.3787 -3.1224 16 6 7.6497 -8.4982 -1.5274 17 7 6.5651 -8.6162 -0.8039 18 14 8.9412 -9.8476 -1.5014 19 1 10.2308 -9.2894 -1.0216 20 1 8.5030 -10.9346 -0.5895 21 1 9.1166 -10.3913 -2.8721 22 6 6.5590 -5.9536 -0.7878 23 6 5.8353 -4.8220 -0.5540 24 6 2.1971 -1.1979 -0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6559 2.1329 -0.0005 29 1 4.1171 2.1371 -0.0010 30 1 6.0250 0.0000 -0.8853 31 1 3.6512 -3.3168 0.2650 32 1 5.1416 -2.4594 0.7253 33 1 4.7342 -2.1096 -2.0474 34 1 5.9764 -3.4152 -3.6439 35 1 7.2693 -5.4401 -4.0897 36 1 6.4318 -9.4046 -0.2547 37 1 6.7235 -6.6651 0.0079 38 1 5.4261 -4.6376 0.4284 39 1 1.6557 -2.1324 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071407658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -2.957797 kcal Electronic energy + Delta-G solvation = -20723.379547 eV Core-core repulsion = 17595.174335 eV Total energy + Delta-G solvation = -3128.205212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10193 -37.86725 -36.95197 -35.19259 -33.24036 -31.86090 -31.32327 -29.44075 -28.58832 -26.54744 -25.76740 -23.85079 -22.46586 -21.38651 -20.57660 -19.83379 -18.26687 -17.18561 -16.41662 -16.15534 -15.56602 -15.16625 -14.95424 -14.47243 -14.03707 -13.79412 -13.63600 -13.38343 -13.04645 -12.75907 -12.63313 -12.49291 -11.98621 -11.84072 -11.68261 -11.62184 -11.53890 -11.08686 -10.99544 -10.84791 -10.45362 -10.39274 -9.70231 -9.29803 -9.20448 -8.99268 -8.54333 -8.47094 -7.47452 -6.62535 -6.37453 -4.01706 1.07894 1.18731 2.94803 3.11993 3.15641 3.18896 3.37837 3.41877 4.06977 4.20260 4.46720 4.67294 4.69883 4.78601 4.79039 5.13203 5.17094 5.39610 5.46122 5.55599 5.75084 5.81162 5.85386 5.92045 6.07893 6.17304 6.28329 6.34687 6.39969 6.50799 6.71145 6.93609 6.95887 7.21864 7.37439 7.56316 7.64407 7.70744 7.85688 8.17036 8.30120 8.49966 8.70579 8.81153 9.07872 9.17028 10.39257 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034086 B = 0.003102 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.244058 B = 9024.632717 C = 9324.783317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.106 4.106 4 C -0.147 4.147 5 C 0.116 3.884 6 O -0.492 6.492 7 C -0.115 4.115 8 C 0.182 3.818 9 N -0.756 5.756 10 C 0.093 3.907 11 C -0.158 4.158 12 C -0.187 4.187 13 C 0.075 3.925 14 C -0.468 4.468 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.808 5.808 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.124 4.124 23 C -0.162 4.162 24 C -0.089 4.089 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.391 0.609 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.381 0.619 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.276 0.724 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 15.657 2.160 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.124 4.124 4 C -0.166 4.166 5 C 0.071 3.929 6 O -0.303 6.303 7 C -0.116 4.116 8 C 0.057 3.943 9 N -0.392 5.392 10 C -0.004 4.004 11 C -0.181 4.181 12 C -0.207 4.207 13 C 0.072 3.928 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.435 5.435 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.144 4.144 23 C -0.184 4.184 24 C -0.108 4.108 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.248 0.752 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.213 0.787 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.213 15.410 3.125 18.224 hybrid contribution 0.537 -0.431 -0.713 0.991 sum -8.676 14.979 2.412 17.478 Atomic orbital electron populations 1.20769 0.91032 1.02760 1.02350 1.19927 0.96242 0.92997 1.00899 1.20887 0.93503 0.97601 1.00420 1.21400 0.94547 0.97726 1.02879 1.18357 0.83261 0.91571 0.99739 1.84784 1.15553 1.96335 1.33593 1.20441 0.94036 0.95289 1.01823 1.19802 0.95927 0.91209 0.87327 1.43777 1.62056 1.23761 1.09573 1.17323 0.99886 0.88762 0.94435 1.19779 1.04857 0.99332 0.94085 1.20536 1.05312 0.97171 0.97721 1.17488 0.92247 0.92435 0.90620 1.19333 1.20087 0.95904 1.14580 0.90996 1.25795 0.94961 0.99211 0.94066 1.69850 1.22926 1.28026 1.22690 0.86463 0.81923 0.79929 0.78866 1.19094 1.20597 1.19287 1.20937 1.00265 0.95718 0.97482 1.20095 1.05450 0.96507 0.96383 1.20947 0.92910 0.97946 0.98974 0.91190 0.91426 0.91638 0.85862 0.85527 0.75222 0.92760 0.91989 0.78698 0.89716 0.89091 0.91278 0.86392 0.89424 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.10 -1.03 5.88 -104.60 -0.62 -1.65 16 3 C -0.11 -1.04 9.69 -39.60 -0.38 -1.42 16 4 C -0.15 -1.59 9.99 -39.43 -0.39 -1.98 16 5 C 0.12 1.47 6.68 -39.22 -0.26 1.21 16 6 O -0.49 -6.38 12.84 -19.43 -0.25 -6.63 16 7 C -0.11 -1.54 5.26 -104.48 -0.55 -2.09 16 8 C 0.18 2.88 4.63 -5.20 -0.02 2.85 16 9 N -0.76 -13.11 5.69 -59.67 -0.34 -13.45 16 10 C 0.09 2.02 6.67 -83.69 -0.56 1.46 16 11 C -0.16 -3.55 9.82 -39.77 -0.39 -3.94 16 12 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 13 C 0.08 2.04 5.57 -106.79 -0.60 1.45 16 14 C -0.47 -12.82 9.03 -37.88 -0.34 -13.16 16 15 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 16 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 17 N -0.81 -21.62 10.96 55.54 0.61 -21.02 16 18 Si 0.90 19.40 29.60 -169.99 -5.03 14.37 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.12 -3.29 8.64 -39.27 -0.34 -3.63 16 23 C -0.16 -3.85 9.23 -39.77 -0.37 -4.22 16 24 C -0.09 -1.06 9.32 -39.61 -0.37 -1.43 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.39 3.82 9.06 45.56 0.41 4.23 16 31 H 0.05 0.88 7.74 -51.93 -0.40 0.48 16 32 H 0.06 1.06 7.79 -51.93 -0.40 0.66 16 33 H 0.38 5.92 8.46 -40.82 -0.35 5.57 16 34 H 0.08 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 38 H 0.09 1.92 6.68 -52.48 -0.35 1.57 16 39 H 0.13 1.42 8.00 -52.49 -0.42 1.00 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -29.66 332.34 -9.64 -39.30 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.34 Total: 12.63 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -5.30 Total: -30.22 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.27 Total: -34.47 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.25 Total: -6.63 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.66 -9.64 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071407658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.344 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds