Wall clock time and date at job start Tue Mar 31 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35751 * 116.99936 * 2 1 4 4 C 1.38586 * 120.14641 * 0.27479 * 3 2 1 5 5 C 1.38161 * 120.08915 * 180.25760 * 4 3 2 6 6 C 1.38521 * 120.37339 * 359.74074 * 5 4 3 7 7 C 1.50699 * 119.86239 * 180.02562 * 6 5 4 8 8 C 1.37853 * 120.28249 * 359.97438 * 6 5 4 9 9 C 1.39649 * 119.90371 * 0.02562 * 8 6 5 10 10 C 1.47803 * 120.17997 * 179.97438 * 9 8 6 11 11 C 1.39977 * 119.45512 * 359.97438 * 10 9 8 12 12 C 1.36561 * 119.46113 * 179.97438 * 11 10 9 13 13 C 1.41334 * 118.42138 * 0.02562 * 12 11 10 14 14 C 1.41025 * 120.54655 * 179.72084 * 13 12 11 15 15 H 1.07999 * 119.99533 * 149.94715 * 14 13 12 16 16 C 1.40001 * 120.00032 * 329.95092 * 14 13 12 17 17 N 1.30808 * 119.99995 * 162.13646 * 16 14 13 18 18 Si 1.86796 * 119.99949 * 342.13125 * 16 14 13 19 19 H 1.48504 * 109.47045 * 95.38492 * 18 16 14 20 20 H 1.48496 * 109.47211 * 215.38387 * 18 16 14 21 21 H 1.48504 * 109.47520 * 335.38915 * 18 16 14 22 22 C 1.40955 * 118.90468 * 359.97438 * 13 12 11 23 23 C 1.50699 * 119.79583 * 180.02562 * 22 13 12 24 24 N 1.31258 * 120.40397 * 0.02562 * 22 13 12 25 25 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47320 * 300.00244 * 1 2 3 27 27 H 1.08999 * 109.47157 * 60.00407 * 1 2 3 28 28 H 1.08005 * 119.95489 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.81621 * 179.72364 * 5 4 3 30 30 H 1.09001 * 109.47313 * 269.97839 * 7 6 5 31 31 H 1.08998 * 109.46883 * 29.98066 * 7 6 5 32 32 H 1.09003 * 109.47391 * 149.97995 * 7 6 5 33 33 H 1.07994 * 120.05033 * 180.02562 * 8 6 5 34 34 H 1.07996 * 120.27171 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.78966 * 179.97438 * 12 11 10 36 36 H 0.96994 * 119.99870 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47211 * 89.99724 * 23 22 13 38 38 H 1.08995 * 109.47125 * 210.00230 * 23 22 13 39 39 H 1.09003 * 109.47175 * 329.99843 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2935 2.3738 0.0057 5 6 1.9219 3.6042 0.0004 6 6 3.3048 3.6843 -0.0054 7 6 3.9782 5.0324 -0.0106 8 6 4.0677 2.5361 -0.0052 9 6 3.4446 1.2863 0.0002 10 6 4.2566 0.0513 -0.0002 11 6 5.6532 0.1457 -0.0066 12 6 6.4036 -0.9953 -0.0065 13 6 5.7346 -2.2403 -0.0004 14 6 6.4653 -3.4465 -0.0059 15 1 6.0564 -4.3275 0.4664 16 6 7.7205 -3.5018 -0.6234 17 7 8.5451 -4.4776 -0.3426 18 14 8.2177 -2.1821 -1.8483 19 1 9.0086 -1.1346 -1.1536 20 1 9.0398 -2.7905 -2.9249 21 1 7.0000 -1.5719 -2.4401 22 6 4.3252 -2.2564 0.0059 23 6 3.5914 -3.5726 0.0130 24 7 3.6480 -1.1320 0.0055 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2148 2.3191 0.0098 29 1 1.3317 4.5086 0.0004 30 1 4.1368 5.3554 -1.0395 31 1 3.3463 5.7562 0.5041 32 1 4.9387 4.9608 0.4998 33 1 5.1455 2.6030 -0.0093 34 1 6.1334 1.1130 -0.0116 35 1 7.4825 -0.9474 -0.0117 36 1 9.4146 -4.5161 -0.7707 37 1 3.4190 -3.8869 1.0424 38 1 2.6350 -3.4582 -0.4970 39 1 4.1896 -4.3249 -0.5012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082481986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:15 Heat of formation + Delta-G solvation = 6.776231 kcal Electronic energy + Delta-G solvation = -21659.258199 eV Core-core repulsion = 18531.475086 eV Total energy + Delta-G solvation = -3127.783113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.83120 -38.49519 -37.14616 -34.23106 -32.65609 -31.71340 -31.27364 -29.94553 -27.67002 -26.97968 -25.66057 -24.97157 -22.54128 -21.85497 -20.26963 -19.93247 -17.66691 -17.55206 -16.06591 -15.56375 -15.24736 -15.16848 -14.75751 -14.13201 -13.88349 -13.54504 -13.50459 -13.30372 -13.22570 -12.81018 -12.35334 -12.06655 -11.97773 -11.95566 -11.69188 -11.47119 -11.28616 -11.15503 -11.05688 -10.82920 -10.48929 -10.44221 -10.28303 -9.91050 -9.58251 -8.78600 -8.39809 -8.02492 -7.86859 -7.18452 -7.11453 -4.59851 1.42343 1.81301 2.52362 2.73764 2.99574 3.09809 3.20860 3.82248 3.82475 4.06751 4.56926 5.03040 5.10188 5.14841 5.31061 5.37687 5.42189 5.50143 5.61314 5.66601 5.72843 5.73549 5.87387 5.98075 6.08122 6.11295 6.24204 6.35826 6.47174 6.61044 6.65084 6.71993 6.74833 6.81236 6.90417 6.93929 7.17956 7.25066 7.47319 7.60018 7.75119 8.00290 8.10891 8.38556 8.53928 9.50344 9.81566 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.005426 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.060780 B = 5158.850861 C = 6356.462365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.266 6.266 3 C 0.129 3.871 4 C -0.210 4.210 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.098 4.098 9 C -0.013 4.013 10 C 0.004 3.996 11 C -0.104 4.104 12 C -0.215 4.215 13 C 0.050 3.950 14 C -0.415 4.415 15 H 0.101 0.899 16 C 0.083 3.917 17 N -0.789 5.789 18 Si 0.911 3.089 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.243 1.243 22 C 0.028 3.972 23 C -0.072 4.072 24 N -0.414 5.414 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.290 0.710 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 10.873 -0.786 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.177 6.177 3 C 0.082 3.918 4 C -0.229 4.229 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.161 4.161 8 C -0.117 4.117 9 C -0.015 4.015 10 C -0.128 4.128 11 C -0.124 4.124 12 C -0.239 4.239 13 C 0.044 3.956 14 C -0.443 4.443 15 H 0.119 0.881 16 C -0.139 4.139 17 N -0.412 5.412 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.167 1.167 22 C -0.120 4.120 23 C -0.130 4.130 24 N -0.122 5.122 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.036 10.480 -0.788 13.861 hybrid contribution 1.158 0.695 -0.447 1.423 sum -7.878 11.175 -1.235 13.729 Atomic orbital electron populations 1.22996 0.80972 1.03244 1.00080 1.86538 1.18574 1.25162 1.87411 1.19118 0.91612 0.84396 0.96662 1.21061 0.99365 0.92413 1.10019 1.20615 0.93745 0.96487 1.01657 1.19563 0.93507 0.94979 1.04478 1.20660 1.00132 0.93644 1.01657 1.20862 0.99502 0.90213 1.01107 1.18084 0.89285 0.92413 1.01702 1.18611 0.89243 0.90028 1.14953 1.21212 0.94174 0.97705 0.99332 1.20986 0.98509 0.92768 1.11624 1.18542 0.93026 0.93195 0.90799 1.19551 0.98949 0.97264 1.28551 0.88145 1.26281 0.94825 0.96285 0.96523 1.69670 1.07130 1.29992 1.34382 0.86296 0.80134 0.80133 0.79801 1.19326 1.21325 1.16657 1.21099 0.90190 0.92812 1.07872 1.20279 0.98681 0.93325 1.00703 1.67000 1.40381 0.97213 1.07644 0.88786 0.93658 0.93655 0.86155 0.86794 0.91891 0.92190 0.91949 0.85659 0.87747 0.87354 0.89952 0.93073 0.92877 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.30 16 2 O -0.27 -5.04 8.31 -18.96 -0.16 -5.20 16 3 C 0.13 2.42 6.70 -38.74 -0.26 2.16 16 4 C -0.21 -3.22 9.03 -39.48 -0.36 -3.58 16 5 C -0.11 -1.51 9.68 -39.51 -0.38 -1.89 16 6 C -0.12 -1.84 5.88 -104.66 -0.61 -2.45 16 7 C -0.10 -1.16 10.00 36.01 0.36 -0.80 16 8 C -0.10 -1.68 9.06 -39.20 -0.35 -2.03 16 9 C -0.01 -0.27 5.89 -104.74 -0.62 -0.89 16 10 C 0.00 0.09 6.74 -82.77 -0.56 -0.47 16 11 C -0.10 -2.34 9.38 -39.54 -0.37 -2.71 16 12 C -0.21 -5.16 7.20 -39.01 -0.28 -5.44 16 13 C 0.05 1.25 5.11 -106.64 -0.54 0.70 16 14 C -0.42 -10.62 8.53 -37.87 -0.32 -10.94 16 15 H 0.10 2.63 7.23 -52.49 -0.38 2.25 16 16 C 0.08 2.05 5.42 -17.33 -0.09 1.95 16 17 N -0.79 -19.75 13.93 55.55 0.77 -18.98 16 18 Si 0.91 20.01 24.53 -169.99 -4.17 15.84 16 19 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 20 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.24 -5.64 6.85 56.52 0.39 -5.25 16 22 C 0.03 0.69 6.86 -81.81 -0.56 0.13 16 23 C -0.07 -1.50 9.59 36.01 0.35 -1.16 16 24 N -0.41 -10.06 8.02 -5.41 -0.04 -10.11 16 25 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.04 0.52 7.65 -51.93 -0.40 0.13 16 27 H 0.04 0.53 7.67 -51.93 -0.40 0.13 16 28 H 0.12 1.53 6.30 -52.48 -0.33 1.19 16 29 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.13 1.98 6.15 -52.49 -0.32 1.66 16 34 H 0.10 2.00 6.15 -52.49 -0.32 1.68 16 35 H 0.11 2.52 4.83 -52.49 -0.25 2.27 16 36 H 0.29 6.54 8.30 -40.82 -0.34 6.20 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.42 6.84 -51.93 -0.36 1.07 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -28.74 318.23 -7.31 -36.04 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.88 Total: 3.71 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -3.62 Total: -26.10 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.73 Total: -29.09 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.16 Total: -5.20 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.74 -7.31 -36.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082481986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.819 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds