Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39329 * 119.13637 * 2 1 4 4 C 1.36569 * 119.92444 * 180.02562 * 3 2 1 5 5 C 1.40782 * 118.14896 * 359.97438 * 4 3 2 6 6 C 1.40450 * 121.35891 * 179.97438 * 5 4 3 7 7 C 1.36173 * 119.72571 * 180.02562 * 6 5 4 8 8 C 1.39241 * 120.93999 * 359.64602 * 7 6 5 9 9 C 1.36566 * 121.00069 * 0.68923 * 8 7 6 10 10 O 1.35842 * 120.17912 * 179.63618 * 9 8 7 11 11 C 1.42897 * 117.00279 * 354.75420 * 10 9 8 12 12 C 1.52999 * 109.47344 * 184.70818 * 11 10 9 13 13 C 1.50706 * 115.54586 * 80.88427 * 12 11 10 14 14 H 1.08002 * 119.99643 * 219.75677 * 13 12 11 15 15 C 1.37871 * 120.00338 * 39.76329 * 13 12 11 16 16 N 1.31524 * 119.99907 * 16.85375 * 15 13 12 17 17 Si 1.86800 * 120.00059 * 196.86061 * 15 13 12 18 18 H 1.48491 * 109.47464 * 89.99784 * 17 15 13 19 19 H 1.48500 * 109.46992 * 209.99546 * 17 15 13 20 20 H 1.48499 * 109.46994 * 329.99322 * 17 15 13 21 21 C 1.52997 * 117.50270 * 295.21374 * 12 11 10 22 22 C 1.52998 * 60.03359 * 252.49743 * 21 12 11 23 23 C 1.41084 * 119.63714 * 359.35829 * 9 8 7 24 24 N 1.31091 * 119.12980 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47366 * 269.98268 * 1 2 3 26 26 H 1.09000 * 109.46851 * 29.97790 * 1 2 3 27 27 H 1.09002 * 109.47414 * 149.97178 * 1 2 3 28 28 H 1.08004 * 120.03815 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.93046 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.13713 * 0.02562 * 6 5 4 31 31 H 1.08006 * 119.52631 * 180.02562 * 7 6 5 32 32 H 1.07997 * 119.49846 * 180.32991 * 8 7 6 33 33 H 1.09004 * 109.47248 * 64.70825 * 11 10 9 34 34 H 1.09000 * 109.47149 * 304.71339 * 11 10 9 35 35 H 0.96997 * 119.99632 * 184.99482 * 16 15 13 36 36 H 1.09003 * 117.49610 * 359.97438 * 21 12 11 37 37 H 1.08999 * 117.50401 * 144.99567 * 21 12 11 38 38 H 1.08998 * 117.49886 * 107.49681 * 22 21 12 39 39 H 1.08994 * 117.50162 * 252.52126 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2170 0.0000 4 6 3.5509 1.2358 -0.0005 5 6 4.2321 0.0037 -0.0005 6 6 5.6354 -0.0556 -0.0016 7 6 6.2600 -1.2657 -0.0020 8 6 5.5272 -2.4496 0.0059 9 6 4.1617 -2.4317 0.0003 10 8 3.4634 -3.5969 0.0007 11 6 4.2179 -4.8054 -0.1092 12 6 3.2622 -5.9960 -0.2095 13 6 2.6818 -6.2501 -1.5769 14 1 1.6476 -6.5443 -1.6783 15 6 3.4709 -6.1070 -2.6983 16 7 4.7807 -6.0787 -2.5815 17 14 2.6800 -5.9530 -4.3836 18 1 2.4273 -4.5207 -4.6829 19 1 3.5898 -6.5203 -5.4111 20 1 1.3942 -6.6958 -4.3966 21 6 2.3752 -6.2940 1.0010 22 6 3.5535 -7.2129 0.6723 23 6 3.4801 -1.1964 0.0000 24 7 2.1451 -1.1451 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5143 28 1 1.6319 2.1445 0.0004 29 1 4.0933 2.1698 -0.0001 30 1 6.2165 0.8546 -0.0020 31 1 7.3392 -1.3075 -0.0024 32 1 6.0466 -3.3965 0.0107 33 1 4.8503 -4.9204 0.7712 34 1 4.8420 -4.7642 -1.0019 35 1 5.3333 -5.9057 -3.3597 36 1 2.4728 -5.6420 1.8690 37 1 1.3718 -6.6737 0.8085 38 1 4.4260 -7.1652 1.3239 39 1 3.3254 -8.1970 0.2631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = 39.843470 kcal Electronic energy + Delta-G solvation = -21775.998678 eV Core-core repulsion = 18649.649469 eV Total energy + Delta-G solvation = -3126.349210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71388 -38.55934 -36.69693 -35.68768 -32.75069 -32.22040 -31.80223 -29.06032 -27.72971 -26.36440 -25.39205 -23.45054 -22.36779 -21.49968 -21.06154 -19.29137 -17.79033 -17.54808 -16.57771 -15.92544 -15.54116 -15.15994 -14.61294 -14.40146 -14.25034 -14.09898 -13.57718 -13.41182 -13.02544 -12.73112 -12.54695 -12.16527 -12.03952 -11.72428 -11.53887 -11.21947 -11.00671 -10.96606 -10.69533 -10.52884 -10.42572 -10.24397 -9.65367 -9.53155 -9.18187 -9.06070 -8.73429 -8.47661 -8.09541 -7.29132 -6.16639 -4.12591 0.76925 1.01387 2.31682 3.18788 3.29449 3.36560 3.40020 3.83199 4.35684 4.38103 4.40339 4.74181 4.93810 4.99203 5.08255 5.14571 5.33813 5.42333 5.52937 5.56531 5.65241 5.70598 5.75711 5.98393 6.06451 6.11895 6.17832 6.23335 6.30078 6.39672 6.50724 6.61679 6.70555 6.74160 6.76745 6.79796 6.98107 7.09636 7.31196 7.39247 7.83915 8.08014 8.33628 8.37752 8.82055 9.46219 10.89632 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.005622 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.718261 B = 4979.171466 C = 5234.836454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.126 3.874 3 C -0.161 4.161 4 C -0.075 4.075 5 C -0.069 4.069 6 C -0.168 4.168 7 C -0.059 4.059 8 C -0.231 4.231 9 C 0.188 3.812 10 O -0.276 6.276 11 C 0.081 3.919 12 C 0.050 3.950 13 C -0.477 4.477 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.197 4.197 22 C -0.189 4.189 23 C 0.106 3.894 24 N -0.435 5.435 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.029 0.971 34 H 0.115 0.885 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 14.019 5.412 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.027 4.027 3 C -0.181 4.181 4 C -0.101 4.101 5 C -0.071 4.071 6 C -0.187 4.187 7 C -0.077 4.077 8 C -0.252 4.252 9 C 0.137 3.863 10 O -0.186 6.186 11 C 0.007 3.993 12 C 0.049 3.951 13 C -0.514 4.514 14 H 0.083 0.917 15 C -0.133 4.133 16 N -0.519 5.519 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.234 4.234 22 C -0.227 4.227 23 C -0.017 4.017 24 N -0.143 5.143 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.047 0.953 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.405 13.018 5.292 14.059 hybrid contribution 0.498 0.810 -0.872 1.291 sum 0.094 13.829 4.420 14.518 Atomic orbital electron populations 1.20708 0.88921 1.03425 1.02894 1.21426 0.97149 0.88075 0.96041 1.21683 0.95028 0.99025 1.02364 1.21310 0.94326 0.96909 0.97542 1.18558 0.94725 0.92966 1.00812 1.20626 0.92301 0.98106 1.07644 1.20621 0.99727 0.91684 0.95640 1.20985 0.92875 1.00148 1.11179 1.18695 0.89998 0.86194 0.91367 1.86231 1.36372 1.12035 1.83995 1.22929 0.94499 0.80382 1.01493 1.18781 0.95507 0.89966 0.90836 1.20534 0.96578 1.45721 0.88566 0.91747 1.24915 0.94605 0.94534 0.99233 1.69908 1.03423 1.47732 1.30800 0.86631 0.79533 0.78666 0.83611 1.20385 1.21228 1.19607 1.22787 0.95290 1.04360 1.00994 1.22993 0.97915 0.96799 1.05001 1.18213 0.89269 0.90799 1.03420 1.67867 1.08202 1.28436 1.09802 0.90600 0.91009 0.90181 0.84980 0.84598 0.85833 0.85856 0.84498 0.95314 0.86782 0.92729 0.91112 0.90312 0.91596 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.14 36.01 0.37 -0.84 16 2 C 0.13 1.96 6.78 -82.50 -0.56 1.40 16 3 C -0.16 -2.02 9.64 -39.78 -0.38 -2.41 16 4 C -0.07 -0.97 9.90 -39.22 -0.39 -1.35 16 5 C -0.07 -1.11 5.74 -106.81 -0.61 -1.73 16 6 C -0.17 -2.39 9.77 -39.49 -0.39 -2.77 16 7 C -0.06 -0.88 9.95 -39.95 -0.40 -1.28 16 8 C -0.23 -4.28 8.97 -39.81 -0.36 -4.63 16 9 C 0.19 4.00 6.70 -39.11 -0.26 3.74 16 10 O -0.28 -6.72 9.91 -19.24 -0.19 -6.91 16 11 C 0.08 1.96 4.43 37.16 0.16 2.12 16 12 C 0.05 1.27 1.93 -155.62 -0.30 0.96 16 13 C -0.48 -13.31 8.98 -34.44 -0.31 -13.62 16 14 H 0.06 1.80 7.87 -52.49 -0.41 1.39 16 15 C 0.07 1.90 5.12 -17.82 -0.09 1.81 16 16 N -0.88 -24.40 11.10 55.43 0.62 -23.78 16 17 Si 0.89 21.52 29.57 -169.99 -5.03 16.49 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.20 -4.47 9.92 -26.73 -0.27 -4.73 16 22 C -0.19 -4.32 9.89 -26.69 -0.26 -4.58 16 23 C 0.11 2.11 6.62 -84.73 -0.56 1.55 16 24 N -0.43 -8.67 10.03 -7.13 -0.07 -8.74 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.14 2.51 6.23 -52.49 -0.33 2.18 16 33 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 34 H 0.11 2.97 4.95 -51.93 -0.26 2.71 16 35 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.07 1.38 8.08 -51.93 -0.42 0.97 16 39 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 330.36 15.07 4.98 4.98 Total: -1.00 -31.04 330.36 -9.47 -40.50 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.17 Total: 3.82 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -4.61 Total: -26.37 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.54 Total: -32.52 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.19 Total: -6.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.04 -9.47 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.348 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds