Wall clock time and date at job start Tue Mar 31 2020 05:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86799 * 119.99623 * 2 1 4 4 H 1.48502 * 109.47431 * 274.64970 * 3 2 1 5 5 H 1.48501 * 109.47324 * 34.65330 * 3 2 1 6 6 H 1.48509 * 109.47229 * 154.65518 * 3 2 1 7 7 C 1.39863 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99851 * 162.12545 * 7 2 1 9 9 C 1.41133 * 120.00007 * 342.12810 * 7 2 1 10 10 C 1.40891 * 120.15525 * 155.08902 * 9 7 2 11 11 C 1.36340 * 119.83375 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16452 * 359.97438 * 11 10 9 13 13 N 1.38853 * 119.84030 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99794 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47184 * 179.97438 * 14 13 12 16 16 C 1.38235 * 120.00031 * 90.00133 * 15 14 13 17 17 C 1.38231 * 119.99787 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00406 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00362 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47297 * 90.00043 * 19 18 17 21 21 C 1.38239 * 119.99540 * 0.25791 * 18 17 16 22 22 C 1.38231 * 119.99782 * 270.02038 * 15 14 13 23 23 C 1.39568 * 120.31066 * 0.25467 * 12 11 10 24 24 C 1.36335 * 120.16192 * 359.48568 * 23 12 11 25 25 H 0.96997 * 120.00053 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.08233 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.91540 * 179.97438 * 11 10 9 28 28 H 0.96997 * 120.00326 * 359.97438 * 13 12 11 29 29 H 1.09000 * 109.47260 * 59.99725 * 14 13 12 30 30 H 1.09003 * 109.47003 * 299.99716 * 14 13 12 31 31 H 1.08002 * 119.99746 * 359.97438 * 16 15 14 32 32 H 1.08001 * 119.99971 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47210 * 330.00021 * 19 18 17 34 34 H 1.09004 * 109.47497 * 210.00066 * 19 18 17 35 35 H 0.96695 * 114.00560 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99688 * 179.72918 * 21 18 17 37 37 H 1.08008 * 120.00348 * 0.02562 * 22 15 14 38 38 H 1.08004 * 119.91395 * 179.72687 * 23 12 11 39 39 H 1.08008 * 120.07847 * 180.23233 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3922 2.1033 -1.3955 5 1 1.4930 2.6223 0.7961 6 1 3.5863 1.4139 0.5994 7 6 2.0084 -1.2112 0.0005 8 1 3.0493 -1.2339 -0.2865 9 6 1.3538 -2.4038 0.3762 10 6 1.8230 -3.6467 -0.0931 11 6 1.1854 -4.7947 0.2735 12 6 0.0708 -4.7408 1.1118 13 7 -0.5737 -5.9141 1.4805 14 6 -1.7436 -5.8617 2.3608 15 6 -2.2517 -7.2593 2.6049 16 6 -1.7698 -7.9933 3.6725 17 6 -2.2356 -9.2755 3.8960 18 6 -3.1835 -9.8235 3.0523 19 6 -3.6908 -11.2215 3.2956 20 8 -4.8317 -11.1714 4.1547 21 6 -3.6619 -9.0912 1.9818 22 6 -3.1994 -7.8073 1.7609 23 6 -0.4023 -3.5128 1.5766 24 6 0.2285 -2.3572 1.2225 25 1 -0.4850 0.8400 0.0004 26 1 2.6851 -3.6899 -0.7422 27 1 1.5437 -5.7481 -0.0858 28 1 -0.2495 -6.7685 1.1552 29 1 -2.5267 -5.2679 1.8894 30 1 -1.4636 -5.4055 3.3104 31 1 -1.0289 -7.5653 4.3315 32 1 -1.8588 -9.8491 4.7299 33 1 -2.9074 -11.8155 3.7663 34 1 -3.9710 -11.6769 2.3457 35 1 -5.2120 -12.0377 4.3544 36 1 -4.3993 -9.5209 1.3200 37 1 -3.5754 -7.2341 0.9262 38 1 -1.2679 -3.4783 2.2215 39 1 -0.1365 -1.4079 1.5860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133070769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:15 Heat of formation + Delta-G solvation = -5.677906 kcal Electronic energy + Delta-G solvation = -20209.811777 eV Core-core repulsion = 17081.488613 eV Total energy + Delta-G solvation = -3128.323165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.70630 -37.92241 -36.98494 -35.10664 -33.25207 -31.70166 -31.04229 -29.44304 -28.86954 -27.03762 -24.62427 -23.52724 -22.82879 -21.32981 -20.62814 -19.85769 -17.78689 -17.18531 -16.71622 -15.97232 -15.91694 -15.20617 -14.99124 -14.58017 -14.22745 -13.83998 -13.56925 -13.55716 -12.97930 -12.96892 -12.65352 -12.45687 -12.12257 -11.75739 -11.68054 -11.33044 -11.10775 -11.00749 -10.93165 -10.77402 -10.44461 -10.42311 -9.69496 -9.29777 -9.20797 -9.00590 -8.81780 -8.51650 -7.47551 -6.62384 -6.37071 -4.01451 1.09041 1.32318 2.92969 3.11934 3.16251 3.21272 3.36876 3.47777 4.07110 4.16871 4.55940 4.60796 4.70174 4.78378 4.86612 4.95230 4.97515 5.07879 5.39343 5.48203 5.73286 5.78625 5.85669 6.01477 6.02728 6.26486 6.30448 6.34269 6.42353 6.62109 6.87210 6.94161 6.95971 7.22096 7.24923 7.37751 7.56718 7.71003 7.86146 8.17262 8.30700 8.50642 8.72075 8.81897 9.08021 9.17184 10.39357 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.051522 B = 0.002576 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.328275 B =10868.598504 C =11054.120276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.158 4.158 12 C 0.092 3.908 13 N -0.757 5.757 14 C 0.176 3.824 15 C -0.085 4.085 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.098 4.098 19 C 0.118 3.882 20 O -0.568 6.568 21 C -0.102 4.102 22 C -0.105 4.105 23 C -0.164 4.164 24 C -0.124 4.124 25 H 0.276 0.724 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.385 0.615 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.378 0.622 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -17.876 6.179 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.180 4.180 12 C -0.005 4.005 13 N -0.393 5.393 14 C 0.051 3.949 15 C -0.085 4.085 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.099 4.099 19 C 0.041 3.959 20 O -0.373 6.373 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.186 4.186 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.217 0.783 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.225 0.775 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.610 -16.949 6.242 19.600 hybrid contribution 0.300 -0.134 -0.202 0.386 sum -7.310 -17.083 6.040 19.538 Atomic orbital electron populations 1.69857 1.07361 1.28582 1.37721 1.25796 0.94654 1.00885 0.92740 0.86416 0.80747 0.81363 0.78790 1.19878 1.20293 1.18682 1.19355 0.97871 0.91369 1.41198 0.90965 1.17498 0.92471 0.91996 0.90898 1.20548 1.02725 0.92625 1.04796 1.19802 0.97954 0.97058 1.03186 1.17346 0.95691 0.85529 1.01929 1.43838 1.32649 1.06022 1.56779 1.19931 0.89055 0.91191 0.94723 1.20150 0.96557 0.96575 0.95231 1.21125 0.99554 0.94100 0.97617 1.21003 0.97061 0.95484 0.98528 1.19585 0.98037 0.95756 0.96487 1.20977 0.87853 0.93598 0.93487 1.86589 1.46353 1.34676 1.69719 1.21011 0.99231 0.94369 0.97443 1.21139 0.96930 0.95174 0.99122 1.20093 1.01499 0.91924 1.05054 1.20927 0.98183 0.96431 0.98904 0.91350 0.89046 0.89634 0.78285 0.92542 0.92588 0.85611 0.86092 0.92817 0.92811 0.77464 0.86076 0.85577 0.89391 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.66 10.98 55.54 0.61 -21.05 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.38 29.59 -169.99 -5.03 14.35 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.80 9.03 -37.88 -0.34 -13.14 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.07 2.03 5.57 -106.80 -0.59 1.44 16 10 C -0.19 -4.68 9.74 -39.26 -0.38 -5.07 16 11 C -0.16 -3.59 9.82 -39.77 -0.39 -3.98 16 12 C 0.09 2.02 6.67 -83.69 -0.56 1.46 16 13 N -0.76 -13.44 5.69 -59.67 -0.34 -13.78 16 14 C 0.18 2.71 5.01 -5.19 -0.03 2.69 16 15 C -0.08 -1.12 5.25 -104.63 -0.55 -1.67 16 16 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 17 C -0.10 -1.13 9.70 -39.59 -0.38 -1.52 16 18 C -0.10 -1.07 5.51 -104.63 -0.58 -1.64 16 19 C 0.12 0.95 7.17 36.00 0.26 1.21 16 20 O -0.57 -4.98 13.64 -35.23 -0.48 -5.46 16 21 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 22 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 23 C -0.16 -3.88 9.23 -39.77 -0.37 -4.24 16 24 C -0.12 -3.30 8.63 -39.27 -0.34 -3.64 16 25 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 26 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 27 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.38 6.28 8.46 -40.82 -0.35 5.94 16 29 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 30 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.38 1.35 9.12 45.56 0.42 1.77 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.09 1.90 6.68 -52.48 -0.35 1.55 16 39 H 0.12 3.23 6.18 -52.48 -0.32 2.91 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -30.66 333.71 -10.05 -40.72 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.35 Total: 11.32 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -5.49 Total: -31.13 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.27 Total: -34.83 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.48 Total: -5.46 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.66 -10.05 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133070769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.039 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds