Wall clock time and date at job start Tue Mar 31 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48503 * 109.46770 * 239.99586 * 3 2 1 5 5 H 1.48499 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46733 * 119.99828 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.08998 * 115.55312 * 350.85762 * 14 13 11 16 16 C 1.53004 * 117.50000 * 136.53220 * 14 13 11 17 17 C 1.53004 * 117.49833 * 205.19042 * 14 13 11 18 18 H 1.09004 * 117.49887 * 144.99619 * 17 14 13 19 19 C 1.52999 * 117.50007 * 0.02562 * 17 14 13 20 20 C 1.52995 * 109.47163 * 179.97438 * 19 17 14 21 21 C 1.52999 * 109.47163 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47087 * 60.00393 * 21 20 19 23 23 C 1.53008 * 109.46909 * 300.00098 * 22 21 20 24 24 C 1.53001 * 109.46964 * 59.99960 * 23 22 21 25 25 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 27 27 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 28 28 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 29 29 H 1.08999 * 117.49865 * 214.97831 * 16 14 13 30 30 H 1.08999 * 117.49309 * 359.97438 * 16 14 13 31 31 H 1.08991 * 109.46907 * 300.00218 * 19 17 14 32 32 H 1.09004 * 109.47364 * 300.00002 * 20 19 17 33 33 H 1.09005 * 109.47097 * 60.00470 * 20 19 17 34 34 H 1.08997 * 109.47314 * 300.00366 * 21 20 19 35 35 H 1.08998 * 109.47493 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.46990 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47065 * 59.99821 * 22 21 20 38 38 H 1.09004 * 109.47091 * 300.00114 * 23 22 21 39 39 H 1.08999 * 109.46660 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46448 * 180.02562 * 24 23 22 41 41 H 1.08991 * 109.47015 * 59.99909 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.2570 -7.8143 0.1687 16 6 3.0010 -8.7250 -0.9259 17 6 3.2353 -8.8054 0.5846 18 1 2.7572 -9.6220 1.1256 19 6 4.6072 -8.3794 1.1112 20 6 5.3527 -9.6054 1.6424 21 6 6.7244 -9.1793 2.1695 22 6 6.5435 -8.1634 3.2993 23 6 5.7979 -6.9374 2.7681 24 6 4.4263 -7.3636 2.2409 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7313 0.8906 27 1 3.1245 -3.7313 -0.8893 28 1 3.8009 -6.1835 0.0004 29 1 2.3687 -9.4890 -1.3784 30 1 3.8241 -8.3686 -1.5452 31 1 5.1816 -7.9262 0.3035 32 1 4.7780 -10.0583 2.4503 33 1 5.4812 -10.3293 0.8377 34 1 7.2993 -8.7261 1.3620 35 1 7.2554 -10.0526 2.5484 36 1 7.5207 -7.8596 3.6745 37 1 5.9686 -8.6166 4.1068 38 1 6.3728 -6.4842 1.9605 39 1 5.6695 -6.2136 3.5728 40 1 3.8953 -6.4902 1.8622 41 1 3.8515 -7.8168 3.0485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155912012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:12 Heat of formation + Delta-G solvation = -41.617535 kcal Electronic energy + Delta-G solvation = -19982.363298 eV Core-core repulsion = 16987.925626 eV Total energy + Delta-G solvation = -2994.437672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07792 -38.55791 -36.61667 -32.88484 -32.42489 -30.88247 -30.66142 -28.91513 -25.49073 -23.56121 -22.91659 -22.07043 -20.82663 -20.23685 -19.65814 -17.85958 -16.59525 -16.14661 -15.44772 -15.00749 -14.80198 -14.78939 -14.34520 -14.19342 -14.11386 -13.61050 -13.12913 -12.85067 -12.63991 -12.45629 -12.33594 -12.11536 -11.88449 -11.37512 -11.32971 -11.05163 -11.04282 -10.98665 -10.78721 -10.72416 -10.52164 -10.33055 -9.95242 -9.80062 -9.41577 -9.05787 -8.50652 -8.24208 -6.49918 -6.21357 -3.92078 2.98098 2.99307 3.23704 3.27420 3.30511 3.67226 3.79263 4.20635 4.31886 4.53753 4.55956 4.75542 4.80289 4.94915 5.05926 5.09962 5.13734 5.14338 5.28889 5.33831 5.34893 5.41111 5.45935 5.56616 5.61131 5.68248 5.83814 5.87152 5.88001 5.94328 5.97700 5.98942 6.04132 6.11299 6.12698 6.21886 6.31454 6.66863 7.59386 7.68841 8.35138 8.59791 9.23800 10.85996 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.003607 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.857009 B = 7759.872051 C = 8727.429425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.707 5.707 14 C 0.094 3.906 15 H 0.136 0.864 16 C -0.192 4.192 17 C -0.158 4.158 18 H 0.109 0.891 19 C -0.055 4.055 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.399 0.601 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 -19.166 3.163 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.360 5.360 14 C -0.013 4.013 15 H 0.154 0.846 16 C -0.231 4.231 17 C -0.178 4.178 18 H 0.127 0.873 19 C -0.074 4.074 20 C -0.147 4.147 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.161 4.161 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.235 0.765 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.257 -19.348 3.161 22.607 hybrid contribution 2.485 1.259 -0.047 2.786 sum 13.742 -18.089 3.114 22.929 Atomic orbital electron populations 1.70010 1.05953 1.27573 1.46762 1.24986 0.95021 0.99006 0.94513 0.86229 0.79246 0.81248 0.78808 1.19936 1.20804 1.19923 1.22831 0.94887 0.91686 1.59096 0.90974 1.85402 1.04774 0.96229 1.96720 1.23538 1.06672 0.95284 1.04944 1.20326 0.86534 0.86160 0.74853 1.90695 1.15359 1.85493 1.47337 1.45562 1.09713 1.04265 1.76484 1.21578 0.97949 0.79010 1.02743 0.84624 1.23565 1.03990 1.02894 0.92622 1.22885 0.97550 1.01365 0.95962 0.87285 1.20701 0.93258 0.95945 0.97497 1.21533 0.95761 0.97062 1.00328 1.21537 0.97083 0.98745 0.98360 1.21543 1.00096 0.96155 0.97942 1.21560 0.96272 0.97378 1.00701 1.21755 0.96998 0.99322 0.98007 0.92119 0.89193 0.89205 0.76498 0.88263 0.88661 0.91377 0.91962 0.92040 0.92103 0.92258 0.92320 0.92114 0.92073 0.91858 0.90694 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.97 7.85 -10.99 -0.09 9.88 16 12 O -0.52 -11.68 15.43 5.55 0.09 -11.60 16 13 N -0.71 -9.57 3.79 -53.80 -0.20 -9.78 16 14 C 0.09 1.13 6.22 -67.93 -0.42 0.71 16 15 H 0.14 1.88 7.40 -51.93 -0.38 1.49 16 16 C -0.19 -1.81 10.11 -26.69 -0.27 -2.08 16 17 C -0.16 -1.45 5.15 -90.58 -0.47 -1.91 16 18 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 19 C -0.06 -0.47 1.71 -90.62 -0.15 -0.62 16 20 C -0.11 -0.81 5.18 -26.73 -0.14 -0.95 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 24 C -0.12 -1.18 4.87 -26.73 -0.13 -1.31 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.40 4.47 6.81 -40.82 -0.28 4.19 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 31 H 0.07 0.58 7.61 -51.93 -0.40 0.18 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.84 5.39 -51.93 -0.28 0.56 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -32.68 341.07 -10.00 -42.68 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.79 Total: 1.89 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.72 Total: -15.46 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.53 Total: -35.23 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.68 -10.00 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155912012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.063 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds