Wall clock time and date at job start Tue Mar 31 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48503 * 109.46770 * 239.99586 * 3 2 1 5 5 H 1.48499 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46733 * 119.99828 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.08998 * 115.55312 * 350.85762 * 14 13 11 16 16 C 1.53004 * 117.50000 * 136.53220 * 14 13 11 17 17 C 1.53004 * 117.49833 * 205.19042 * 14 13 11 18 18 H 1.09004 * 117.49887 * 144.99619 * 17 14 13 19 19 C 1.52999 * 117.50007 * 0.02562 * 17 14 13 20 20 C 1.52995 * 109.47163 * 179.97438 * 19 17 14 21 21 C 1.52999 * 109.47163 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47087 * 60.00393 * 21 20 19 23 23 C 1.53008 * 109.46909 * 300.00098 * 22 21 20 24 24 C 1.53001 * 109.46964 * 59.99960 * 23 22 21 25 25 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 27 27 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 28 28 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 29 29 H 1.08999 * 117.49865 * 214.97831 * 16 14 13 30 30 H 1.08999 * 117.49309 * 359.97438 * 16 14 13 31 31 H 1.08991 * 109.46907 * 300.00218 * 19 17 14 32 32 H 1.09004 * 109.47364 * 300.00002 * 20 19 17 33 33 H 1.09005 * 109.47097 * 60.00470 * 20 19 17 34 34 H 1.08997 * 109.47314 * 300.00366 * 21 20 19 35 35 H 1.08998 * 109.47493 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.46990 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47065 * 59.99821 * 22 21 20 38 38 H 1.09004 * 109.47091 * 300.00114 * 23 22 21 39 39 H 1.08999 * 109.46660 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46448 * 180.02562 * 24 23 22 41 41 H 1.08991 * 109.47015 * 59.99909 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.2570 -7.8143 0.1687 16 6 3.0010 -8.7250 -0.9259 17 6 3.2353 -8.8054 0.5846 18 1 2.7572 -9.6220 1.1256 19 6 4.6072 -8.3794 1.1112 20 6 5.3527 -9.6054 1.6424 21 6 6.7244 -9.1793 2.1695 22 6 6.5435 -8.1634 3.2993 23 6 5.7979 -6.9374 2.7681 24 6 4.4263 -7.3636 2.2409 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7313 0.8906 27 1 3.1245 -3.7313 -0.8893 28 1 3.8009 -6.1835 0.0004 29 1 2.3687 -9.4890 -1.3784 30 1 3.8241 -8.3686 -1.5452 31 1 5.1816 -7.9262 0.3035 32 1 4.7780 -10.0583 2.4503 33 1 5.4812 -10.3293 0.8377 34 1 7.2993 -8.7261 1.3620 35 1 7.2554 -10.0526 2.5484 36 1 7.5207 -7.8596 3.6745 37 1 5.9686 -8.6166 4.1068 38 1 6.3728 -6.4842 1.9605 39 1 5.6695 -6.2136 3.5728 40 1 3.8953 -6.4902 1.8622 41 1 3.8515 -7.8168 3.0485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155912012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:11 Heat of formation + Delta-G solvation = -60.446229 kcal Electronic energy + Delta-G solvation = -19983.179772 eV Core-core repulsion = 16987.925626 eV Total energy + Delta-G solvation = -2995.254146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13969 -39.68350 -37.52108 -34.58981 -34.14971 -31.57083 -31.42325 -30.40210 -27.67037 -24.27335 -23.69860 -22.97087 -22.02470 -21.01767 -20.47573 -19.84975 -18.01810 -17.28290 -16.87826 -16.49443 -16.29260 -15.82534 -15.67274 -15.06350 -14.93131 -14.77827 -14.52990 -14.18672 -13.84933 -13.40056 -13.31157 -13.17354 -13.00981 -12.86853 -12.64535 -12.59076 -12.13703 -12.02621 -11.91276 -11.75926 -11.39193 -11.22899 -11.13043 -11.04035 -11.01121 -10.64244 -10.28886 -9.59269 -8.67139 -8.34613 -6.13062 1.25523 1.44037 1.46028 1.54061 1.55941 2.20878 2.27752 2.91070 2.99502 3.30701 3.57697 3.77080 3.87225 3.91120 4.01750 4.07025 4.21040 4.28062 4.39403 4.46762 4.47741 4.60809 4.67113 4.69173 4.72796 4.79561 4.86502 4.93180 5.03093 5.21974 5.23370 5.30491 5.33042 5.37134 5.41375 5.45301 5.50870 5.54700 5.64265 6.19440 6.45489 7.06454 7.21726 8.74394 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.003607 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.857009 B = 7759.872051 C = 8727.429425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.680 5.680 14 C 0.057 3.943 15 H 0.112 0.888 16 C -0.172 4.172 17 C -0.135 4.135 18 H 0.120 0.880 19 C -0.053 4.053 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.122 4.122 25 H 0.271 0.729 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.414 0.586 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.444 -20.144 2.945 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.333 5.333 14 C -0.049 4.049 15 H 0.130 0.870 16 C -0.210 4.210 17 C -0.155 4.155 18 H 0.138 0.862 19 C -0.071 4.071 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.160 4.160 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.252 0.748 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.314 -20.375 2.944 25.074 hybrid contribution 1.600 1.412 0.045 2.134 sum 15.913 -18.964 2.988 24.936 Atomic orbital electron populations 1.70181 1.07992 1.28696 1.47917 1.26129 0.95956 1.03312 0.93677 0.85008 0.77819 0.75669 0.79530 1.18617 1.20384 1.18620 1.23181 0.95374 0.92020 1.59045 0.89893 1.85580 1.10351 0.99120 1.97050 1.23366 1.03665 0.94313 1.06718 1.20048 0.86227 0.86539 0.74907 1.90681 1.17383 1.85987 1.50198 1.45231 1.09732 1.04010 1.74291 1.21664 0.97615 0.78590 1.07044 0.86995 1.23645 1.03464 1.01082 0.92825 1.22950 0.96954 0.99418 0.96150 0.86227 1.20713 0.92940 0.96290 0.97189 1.21507 0.95718 0.96488 1.00627 1.21531 0.96971 0.98906 0.98129 1.21536 1.00148 0.95787 0.98171 1.21555 0.95903 0.97842 1.00603 1.21713 0.97232 0.98828 0.98197 0.91970 0.87312 0.87250 0.74807 0.86952 0.87627 0.90751 0.92021 0.91009 0.91816 0.91249 0.91724 0.92372 0.91647 0.92675 0.92555 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 11 C 0.54 20.18 7.85 87.66 0.69 20.87 16 12 O -0.56 -26.63 15.43 -3.04 -0.05 -26.68 16 13 N -0.68 -17.83 3.79 -442.52 -1.67 -19.50 16 14 C 0.06 1.32 6.22 44.99 0.28 1.60 16 15 H 0.11 3.19 7.40 -2.39 -0.02 3.17 16 16 C -0.17 -2.79 10.11 30.62 0.31 -2.48 16 17 C -0.14 -2.17 5.15 -10.77 -0.06 -2.22 16 18 H 0.12 1.72 8.11 -2.38 -0.02 1.70 16 19 C -0.05 -0.76 1.71 -10.79 -0.02 -0.78 16 20 C -0.11 -1.25 5.18 30.59 0.16 -1.10 16 21 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 22 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 23 C -0.12 -1.93 5.92 30.60 0.18 -1.75 16 24 C -0.12 -2.17 4.87 30.60 0.15 -2.02 16 25 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 26 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 27 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 28 H 0.41 8.47 6.81 -92.71 -0.63 7.84 16 29 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 1.56 8.05 -2.39 -0.02 1.54 16 31 H 0.07 1.01 7.61 -2.39 -0.02 1.00 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 1.20 5.39 -2.39 -0.01 1.19 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.21 341.07 3.41 -69.80 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.38 Total: 20.92 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.60 Total: -24.72 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.39 Total: -75.49 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -73.21 3.41 -69.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155912012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.350 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds