Wall clock time and date at job start Tue Mar 31 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47511 * 270.00355 * 3 2 1 5 5 H 1.48501 * 109.47018 * 30.00217 * 3 2 1 6 6 H 1.48493 * 109.47008 * 150.00011 * 3 2 1 7 7 C 1.38796 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99757 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00125 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47405 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99928 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99888 * 180.02562 * 13 11 10 15 15 H 1.08999 * 115.56186 * 350.71365 * 14 13 11 16 16 C 1.53002 * 117.49702 * 136.39598 * 14 13 11 17 17 C 1.53000 * 60.02940 * 107.50394 * 16 14 13 18 18 H 1.08999 * 117.49959 * 252.49451 * 17 16 14 19 19 C 1.53008 * 117.49506 * 107.50086 * 17 16 14 20 20 C 1.53001 * 109.46994 * 231.38831 * 19 17 16 21 21 C 1.53000 * 109.46833 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.46991 * 60.00614 * 21 20 19 23 23 C 1.53001 * 109.46831 * 299.99387 * 22 21 20 24 24 C 1.53000 * 109.46833 * 60.00516 * 23 22 21 25 25 H 0.96998 * 120.00783 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47157 * 60.00131 * 10 9 7 27 27 H 1.08996 * 109.47389 * 300.00335 * 10 9 7 28 28 H 0.96998 * 119.99652 * 0.02562 * 13 11 10 29 29 H 1.09002 * 117.49918 * 0.02562 * 16 14 13 30 30 H 1.09002 * 117.49754 * 215.00577 * 16 14 13 31 31 H 1.08995 * 109.47352 * 351.38991 * 19 17 16 32 32 H 1.08995 * 109.47202 * 300.00252 * 20 19 17 33 33 H 1.09004 * 109.47062 * 60.00366 * 20 19 17 34 34 H 1.08995 * 109.47347 * 300.00058 * 21 20 19 35 35 H 1.09001 * 109.46725 * 180.02562 * 21 20 19 36 36 H 1.09007 * 109.46871 * 179.97438 * 22 21 20 37 37 H 1.08995 * 109.47529 * 59.99555 * 22 21 20 38 38 H 1.08995 * 109.47202 * 300.00369 * 23 22 21 39 39 H 1.09004 * 109.47062 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.46725 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.47347 * 59.99942 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5024 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.3306 -7.7150 -0.0003 15 1 1.2570 -7.8152 0.1588 16 6 3.0030 -8.7211 -0.9366 17 6 3.2351 -8.8087 0.5731 18 1 4.2124 -8.5076 0.9504 19 6 2.5631 -9.9592 1.3256 20 6 1.7919 -9.4030 2.5242 21 6 1.1205 -10.5534 3.2770 22 6 2.1879 -11.5336 3.7676 23 6 2.9591 -12.0898 2.5690 24 6 3.6306 -10.9393 1.8163 25 1 -0.4851 0.8400 0.0004 26 1 3.1245 -3.7313 0.8895 27 1 3.1246 -3.7313 -0.8904 28 1 3.8011 -6.1834 -0.0006 29 1 3.8278 -8.3623 -1.5523 30 1 2.3715 -9.4830 -1.3938 31 1 1.8737 -10.4762 0.6582 32 1 2.4813 -8.8859 3.1916 33 1 1.0317 -8.7043 2.1747 34 1 0.4312 -11.0708 2.6098 35 1 0.5707 -10.1571 4.1306 36 1 1.7096 -12.3530 4.3043 37 1 2.8773 -11.0161 4.4348 38 1 2.2698 -12.6072 1.9018 39 1 3.7193 -12.7884 2.9185 40 1 4.1803 -11.3356 0.9626 41 1 4.3199 -10.4219 2.4834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155912127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:14 Heat of formation + Delta-G solvation = -47.720645 kcal Electronic energy + Delta-G solvation = -19453.741237 eV Core-core repulsion = 16459.038914 eV Total energy + Delta-G solvation = -2994.702323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83714 -38.71262 -36.64939 -33.01203 -32.42851 -30.96038 -30.51670 -28.83683 -25.49459 -23.58305 -23.00054 -21.99861 -20.58931 -20.33527 -19.86251 -17.81945 -16.64703 -16.23356 -15.59970 -14.86647 -14.80565 -14.53328 -14.47763 -14.31164 -14.04991 -13.29089 -13.27687 -12.86616 -12.73583 -12.48384 -12.35597 -12.18749 -11.88044 -11.35255 -11.31621 -11.08525 -11.04429 -11.02287 -10.80107 -10.72376 -10.62871 -10.29812 -9.94311 -9.79581 -9.40988 -9.06769 -8.56617 -8.23953 -6.50104 -6.21690 -3.92307 2.97272 2.99400 3.22408 3.27400 3.31303 3.66016 3.78624 4.20322 4.36830 4.52069 4.55850 4.73375 4.78988 4.92527 5.06496 5.09225 5.13266 5.13551 5.26781 5.31913 5.32654 5.38476 5.44154 5.54708 5.60552 5.69047 5.81005 5.86462 5.88003 5.92672 5.95947 5.97409 6.03917 6.08440 6.13203 6.20671 6.30636 6.67260 7.59513 7.69682 8.35164 8.59962 9.23582 10.85764 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.002755 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.594273 B =10160.868438 C =10404.330868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.515 6.515 13 N -0.710 5.710 14 C 0.094 3.906 15 H 0.136 0.864 16 C -0.191 4.191 17 C -0.157 4.157 18 H 0.104 0.896 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.110 4.110 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.399 0.601 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -22.846 3.644 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.362 5.362 14 C -0.013 4.013 15 H 0.154 0.846 16 C -0.230 4.230 17 C -0.176 4.176 18 H 0.123 0.877 19 C -0.071 4.071 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.148 4.148 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.233 0.767 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.642 -23.031 3.651 24.246 hybrid contribution 2.566 1.358 -0.064 2.904 sum 9.208 -21.672 3.587 23.819 Atomic orbital electron populations 1.70014 1.05952 1.27473 1.46855 1.24994 0.95033 0.99040 0.94539 0.86162 0.79401 0.81551 0.78348 1.20266 1.20743 1.19705 1.22866 0.94911 0.91652 1.58955 0.90928 1.85403 1.04836 0.96282 1.96716 1.23534 1.06650 0.95238 1.04976 1.20324 0.86525 0.86156 0.74776 1.90694 1.15353 1.85506 1.47374 1.45436 1.09672 1.04271 1.76801 1.21622 0.98179 0.78809 1.02678 0.84624 1.23589 1.03919 1.02911 0.92603 1.22887 1.00665 0.98793 0.95296 0.87748 1.20725 0.96453 0.93757 0.96208 1.21577 0.99528 0.97537 0.96621 1.21542 0.97700 0.96573 0.99968 1.21547 0.97975 0.98693 0.97559 1.21534 0.99319 0.97556 0.97299 1.21541 0.97528 0.96045 0.99650 0.92169 0.89165 0.89165 0.76738 0.88678 0.88233 0.91028 0.91902 0.91458 0.92087 0.91988 0.92327 0.92079 0.92086 0.92229 0.92001 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.54 10.08 7.85 -10.98 -0.09 10.00 16 12 O -0.52 -11.76 15.43 5.56 0.09 -11.68 16 13 N -0.71 -9.72 5.57 -53.77 -0.30 -10.02 16 14 C 0.09 1.14 5.64 -67.90 -0.38 0.76 16 15 H 0.14 1.93 6.87 -51.93 -0.36 1.57 16 16 C -0.19 -1.82 10.10 -26.73 -0.27 -2.09 16 17 C -0.16 -1.44 5.08 -90.58 -0.46 -1.90 16 18 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 19 C -0.05 -0.45 2.34 -90.61 -0.21 -0.66 16 20 C -0.12 -1.09 5.04 -26.73 -0.13 -1.23 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 24 C -0.11 -0.81 5.18 -26.73 -0.14 -0.95 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 27 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.40 4.28 8.83 -40.82 -0.36 3.92 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 0.87 8.05 -51.93 -0.42 0.46 16 31 H 0.07 0.62 7.90 -51.93 -0.41 0.21 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.75 7.29 -51.93 -0.38 0.37 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -33.01 346.68 -10.19 -43.20 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.96 Total: 1.31 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.74 Total: -15.13 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.43 Total: -35.52 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.01 -10.19 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155912127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.518 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds