Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99961 * 180.02562 * 13 11 10 15 15 H 1.09005 * 115.55048 * 9.41983 * 14 13 11 16 16 C 1.53000 * 117.49935 * 223.74532 * 14 13 11 17 17 C 1.52997 * 117.49980 * 155.08726 * 14 13 11 18 18 H 1.08997 * 117.50178 * 359.97438 * 17 14 13 19 19 C 1.53005 * 117.50022 * 214.97864 * 17 14 13 20 20 C 1.52999 * 109.47360 * 180.02562 * 19 17 14 21 21 C 1.52993 * 109.47279 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.47388 * 59.99822 * 21 20 19 23 23 C 1.52999 * 109.47056 * 300.00314 * 22 21 20 24 24 C 1.52998 * 109.47578 * 59.99779 * 23 22 21 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 27 27 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 28 28 H 0.97002 * 120.00354 * 359.97438 * 13 11 10 29 29 H 1.09001 * 117.49687 * 0.02562 * 16 14 13 30 30 H 1.09005 * 117.49635 * 144.99302 * 16 14 13 31 31 H 1.08997 * 109.46728 * 300.00193 * 19 17 14 32 32 H 1.09005 * 109.46832 * 300.00095 * 20 19 17 33 33 H 1.08998 * 109.46868 * 59.99725 * 20 19 17 34 34 H 1.09005 * 109.47029 * 299.99684 * 21 20 19 35 35 H 1.09000 * 109.47013 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47344 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47148 * 59.99935 * 22 21 20 38 38 H 1.08998 * 109.47292 * 299.99336 * 23 22 21 39 39 H 1.09004 * 109.47267 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.47784 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46781 * 59.99646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 7.4907 -4.7359 -0.0011 15 1 8.1142 -3.8562 0.1591 16 6 8.0257 -5.8197 -0.9391 17 6 7.9852 -6.0658 0.5711 18 1 7.2355 -6.7613 0.9484 19 6 9.3173 -6.0594 1.3238 20 6 9.6336 -7.4742 1.8130 21 6 10.9653 -7.4676 2.5661 22 6 10.8681 -6.5231 3.7658 23 6 10.5519 -5.1083 3.2766 24 6 9.2201 -5.1148 2.5234 25 1 -0.4850 0.8401 0.0004 26 1 3.6440 -3.4315 0.8904 27 1 3.6433 -3.4318 -0.8896 28 1 5.4290 -5.2436 0.0010 29 1 7.3026 -6.3531 -1.5561 30 1 9.0011 -5.6531 -1.3962 31 1 10.1098 -5.7204 0.6567 32 1 8.8410 -7.8137 2.4799 33 1 9.7023 -8.1472 0.9583 34 1 11.7580 -7.1280 1.8995 35 1 11.1908 -8.4757 2.9142 36 1 11.8167 -6.5188 4.3026 37 1 10.0754 -6.8627 4.4324 38 1 11.3446 -4.7686 2.6101 39 1 10.4822 -4.4354 4.1313 40 1 8.9946 -4.1068 2.1753 41 1 8.4274 -5.4545 3.1901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155912248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = -47.486527 kcal Electronic energy + Delta-G solvation = -19505.146191 eV Core-core repulsion = 16510.454020 eV Total energy + Delta-G solvation = -2994.692171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91380 -38.80346 -36.71968 -33.11003 -32.43965 -30.99866 -30.57869 -28.97738 -25.62335 -23.63089 -23.04805 -22.08146 -20.65899 -20.41306 -19.91297 -17.84827 -16.74548 -16.30631 -15.65700 -15.00194 -14.98137 -14.56051 -14.52376 -14.35083 -13.96457 -13.45355 -13.29847 -12.90262 -12.79712 -12.70109 -12.40514 -12.31247 -11.92801 -11.39362 -11.35720 -11.27214 -11.14270 -11.00678 -10.81259 -10.70916 -10.57605 -10.34121 -9.97271 -9.84873 -9.53916 -9.00752 -8.65563 -8.50775 -6.92297 -6.29242 -4.01041 2.72457 2.86254 3.25896 3.33434 3.50515 3.61893 3.72149 4.31859 4.33166 4.47994 4.51677 4.68302 4.71452 4.74575 4.87368 5.02808 5.09108 5.09844 5.17950 5.24421 5.28242 5.29169 5.36230 5.40512 5.53144 5.64525 5.75073 5.77481 5.82766 5.87213 5.89872 5.92444 5.99081 6.00652 6.04424 6.15872 6.26489 6.57852 7.58896 7.93845 8.41293 8.46859 9.16894 10.79986 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033678 B = 0.002929 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.193055 B = 9558.501467 C = 9910.501008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.708 5.708 14 C 0.093 3.907 15 H 0.136 0.864 16 C -0.191 4.191 17 C -0.156 4.156 18 H 0.105 0.895 19 C -0.053 4.053 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.271 0.729 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.400 0.600 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.332 -16.818 3.564 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.392 6.392 13 N -0.360 5.360 14 C -0.014 4.014 15 H 0.154 0.846 16 C -0.229 4.229 17 C -0.175 4.175 18 H 0.123 0.877 19 C -0.072 4.072 20 C -0.148 4.148 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.153 4.153 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.234 0.766 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.417 -15.118 3.562 26.456 hybrid contribution -1.215 -0.808 -0.021 1.459 sum 20.202 -15.926 3.541 25.967 Atomic orbital electron populations 1.69942 1.05916 1.27770 1.48072 1.24720 0.94461 0.98985 0.93177 0.86730 0.81898 0.83252 0.79942 1.19197 1.15902 1.19940 1.22317 0.88271 0.97544 1.58785 0.89383 1.84790 1.09274 0.99922 1.97426 1.23282 0.93815 1.04508 1.05870 1.20290 0.90590 0.82145 0.74872 1.90690 1.58743 1.42134 1.47614 1.45392 1.05871 1.08148 1.76555 1.21621 0.82930 0.93970 1.02882 0.84630 1.23604 1.03173 1.03562 0.92607 1.22891 0.99347 0.99998 0.95301 0.87661 1.20728 0.94581 0.95662 0.96192 1.21542 0.97319 0.96242 0.99680 1.21533 0.97635 0.99263 0.97283 1.21546 1.01288 0.95379 0.97570 1.21541 0.97640 0.96645 0.99952 1.21576 0.97323 0.99725 0.96629 0.91935 0.88426 0.88399 0.76559 0.88595 0.88197 0.91026 0.91965 0.91964 0.92091 0.92193 0.92310 0.92058 0.92093 0.91999 0.91527 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.24 -5.98 6.74 56.52 0.38 -5.59 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.05 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.51 7.85 -10.99 -0.09 9.43 16 12 O -0.52 -11.16 15.43 5.56 0.09 -11.08 16 13 N -0.71 -9.15 5.57 -53.81 -0.30 -9.45 16 14 C 0.09 1.07 5.63 -67.93 -0.38 0.68 16 15 H 0.14 1.82 6.87 -51.93 -0.36 1.47 16 16 C -0.19 -1.71 10.11 -26.70 -0.27 -1.98 16 17 C -0.16 -1.36 5.08 -90.58 -0.46 -1.81 16 18 H 0.11 0.87 8.11 -51.93 -0.42 0.45 16 19 C -0.05 -0.43 2.34 -90.62 -0.21 -0.64 16 20 C -0.11 -0.78 5.19 -26.73 -0.14 -0.91 16 21 C -0.12 -0.79 5.92 -26.74 -0.16 -0.95 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 24 C -0.12 -1.04 5.04 -26.73 -0.13 -1.17 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.10 1.75 8.14 -51.91 -0.42 1.32 16 27 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 28 H 0.40 4.03 8.83 -40.82 -0.36 3.67 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 31 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.70 7.29 -51.93 -0.38 0.32 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -32.65 343.99 -9.68 -42.33 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.00 Total: 0.99 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.72 Total: -13.69 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.48 Total: -35.29 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.65 -9.68 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155912248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.152 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds