Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48495 * 109.47360 * 240.00024 * 3 2 1 5 5 H 1.48507 * 109.46733 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47418 * 119.99561 * 3 2 1 7 7 C 1.38808 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99998 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99616 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99964 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47206 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99935 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99771 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47391 * 34.99730 * 14 13 11 16 16 C 1.53002 * 109.46799 * 274.99826 * 14 13 11 17 17 C 1.53006 * 109.46711 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47445 * 59.99695 * 17 16 14 19 19 C 1.53002 * 109.47092 * 300.00075 * 18 17 16 20 20 H 1.09002 * 109.47067 * 299.99853 * 19 18 17 21 21 C 1.53000 * 109.46911 * 179.97438 * 19 18 17 22 22 C 1.53002 * 117.49438 * 128.74346 * 21 19 18 23 23 C 1.53010 * 117.49700 * 60.08999 * 21 19 18 24 24 C 1.53000 * 109.46840 * 155.00060 * 14 13 11 25 25 H 0.96993 * 120.00088 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47129 * 59.99981 * 10 9 7 27 27 H 1.08995 * 109.47331 * 300.00066 * 10 9 7 28 28 H 0.96998 * 119.99599 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47075 * 299.99543 * 16 14 13 30 30 H 1.08996 * 109.47407 * 60.00500 * 16 14 13 31 31 H 1.09001 * 109.46726 * 179.97438 * 17 16 14 32 32 H 1.09002 * 109.46589 * 299.99365 * 17 16 14 33 33 H 1.09002 * 109.47045 * 59.99942 * 18 17 16 34 34 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 35 35 H 1.08997 * 115.55539 * 274.42063 * 21 19 18 36 36 H 1.08997 * 117.50335 * 0.02562 * 22 21 19 37 37 H 1.09005 * 117.49483 * 145.02243 * 22 21 19 38 38 H 1.08994 * 117.49671 * 214.97816 * 23 21 19 39 39 H 1.09001 * 117.49478 * 359.97345 * 23 21 19 40 40 H 1.09001 * 109.47194 * 299.99493 * 24 14 13 41 41 H 1.08992 * 109.47399 * 59.99666 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3028 0.0012 12 8 0.7913 -5.5024 0.0021 13 7 2.8443 -6.3431 0.0018 14 6 2.3306 -7.7151 0.0019 15 1 1.4151 -7.7603 -0.5880 16 6 2.0334 -8.1482 1.4389 17 6 1.4974 -9.5814 1.4390 18 6 2.5436 -10.5172 0.8301 19 6 2.8407 -10.0839 -0.6068 20 1 1.9253 -10.1295 -1.1968 21 6 3.8874 -11.0194 -1.2154 22 6 3.5689 -11.6472 -2.5739 23 6 3.5377 -12.5062 -1.3073 24 6 3.3764 -8.6512 -0.6071 25 1 -0.4850 0.8400 -0.0004 26 1 3.1246 -3.7313 0.8905 27 1 3.1246 -3.7314 -0.8894 28 1 3.8011 -6.1834 0.0015 29 1 2.9489 -8.1031 2.0287 30 1 1.2884 -7.4814 1.8727 31 1 1.2861 -9.8901 2.4627 32 1 0.5820 -9.6268 0.8491 33 1 3.4590 -10.4716 1.4201 34 1 2.1619 -11.5382 0.8307 35 1 4.9260 -10.7583 -1.0127 36 1 2.6141 -11.3935 -3.0342 37 1 4.3982 -11.7994 -3.2648 38 1 4.3464 -13.2230 -1.1654 39 1 2.5623 -12.8178 -0.9338 40 1 3.5881 -8.3426 -1.6308 41 1 4.2919 -8.6060 -0.0173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157268663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -43.771305 kcal Electronic energy + Delta-G solvation = -19655.815902 eV Core-core repulsion = 16661.284835 eV Total energy + Delta-G solvation = -2994.531067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98216 -38.61829 -36.53516 -33.76400 -32.41390 -30.82910 -30.26431 -28.03815 -25.46361 -23.76777 -23.02190 -22.13516 -20.80239 -20.22153 -19.74267 -17.80356 -16.49433 -16.27659 -15.63003 -14.98467 -14.81217 -14.78300 -14.65518 -14.21336 -13.98517 -13.51108 -13.14647 -12.93668 -12.74613 -12.47405 -12.02474 -11.90882 -11.85270 -11.35325 -11.29872 -11.03062 -11.03024 -10.86976 -10.82268 -10.75019 -10.63072 -10.32760 -10.02914 -9.80105 -9.30482 -9.04828 -8.80005 -8.21908 -6.48127 -6.20109 -3.90495 3.05954 3.14441 3.24413 3.28403 3.32200 3.49190 3.74212 4.22059 4.25597 4.53658 4.58971 4.70618 4.75002 4.85358 5.01444 5.14731 5.15570 5.22299 5.29503 5.33649 5.33859 5.37520 5.42089 5.49264 5.59811 5.67061 5.74613 5.81875 5.86449 5.91268 5.93400 5.99023 6.07807 6.12054 6.16785 6.24983 6.32976 6.74624 7.60634 7.78463 8.36470 8.67617 9.24969 10.87283 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.041043 B = 0.002816 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.051915 B = 9941.647109 C =10235.064914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.148 3.852 15 H 0.086 0.914 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.053 4.053 20 H 0.073 0.927 21 C -0.146 4.146 22 C -0.182 4.182 23 C -0.181 4.181 24 C -0.117 4.117 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.396 0.604 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.616 -23.113 -0.556 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.389 5.389 14 C 0.043 3.957 15 H 0.104 0.896 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.072 4.072 20 H 0.092 0.908 21 C -0.164 4.164 22 C -0.218 4.218 23 C -0.218 4.218 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.230 0.770 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.433 -23.322 -0.561 24.484 hybrid contribution 2.526 1.365 -0.010 2.871 sum 9.959 -21.957 -0.571 24.116 Atomic orbital electron populations 1.70007 1.05947 1.27547 1.46821 1.24994 0.95028 0.99015 0.94561 0.86226 0.79234 0.81257 0.78788 1.19953 1.20815 1.19946 1.22832 0.94869 0.91710 1.58997 0.91006 1.85384 1.05003 0.96277 1.96713 1.23538 1.06509 0.95548 1.04845 1.20301 0.86597 0.86286 0.74989 1.90692 1.15359 1.85584 1.47564 1.46084 1.09781 1.05385 1.77620 1.20869 0.97744 0.80666 0.96452 0.89601 1.21945 1.01612 0.96485 0.96898 1.21503 0.98574 0.94487 1.00971 1.21584 0.99258 0.98860 0.95184 1.20679 0.97163 0.92938 0.96370 0.90842 1.22336 0.99891 0.94135 1.00015 1.23036 1.03192 1.04672 0.90947 1.22941 1.03014 0.93550 1.02257 1.21798 0.98328 0.93936 1.01422 0.92139 0.89304 0.89303 0.77003 0.91978 0.91103 0.91761 0.91747 0.91871 0.91926 0.87905 0.88742 0.89019 0.89045 0.88770 0.91179 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.03 7.81 -10.98 -0.09 9.94 16 12 O -0.52 -11.83 15.53 5.56 0.09 -11.74 16 13 N -0.74 -9.97 5.08 -53.80 -0.27 -10.25 16 14 C 0.15 1.77 2.45 -67.93 -0.17 1.60 16 15 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 16 C -0.13 -1.50 5.50 -26.73 -0.15 -1.65 16 17 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 18 C -0.11 -0.87 5.04 -26.73 -0.13 -1.01 16 19 C -0.05 -0.42 2.34 -90.64 -0.21 -0.64 16 20 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 21 C -0.15 -1.05 5.15 -90.61 -0.47 -1.52 16 22 C -0.18 -1.28 10.18 -26.69 -0.27 -1.55 16 23 C -0.18 -1.20 9.74 -26.69 -0.26 -1.46 16 24 C -0.12 -1.04 4.65 -26.75 -0.12 -1.17 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.40 4.22 8.60 -40.82 -0.35 3.87 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 7.29 -51.93 -0.38 0.07 16 35 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.61 7.61 -51.93 -0.40 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -33.29 346.03 -10.04 -43.33 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.96 Total: 1.11 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.61 Total: -14.68 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.46 Total: -35.86 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.29 -10.04 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157268663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.440 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds