Wall clock time and date at job start Tue Mar 31 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47131 * 268.66029 * 3 2 1 5 5 H 1.48496 * 109.47270 * 28.65785 * 3 2 1 6 6 H 1.48505 * 109.47209 * 148.66037 * 3 2 1 7 7 C 1.38954 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99803 * 19.55464 * 7 2 1 9 9 N 1.37100 * 119.99852 * 199.56089 * 7 2 1 10 10 C 1.34767 * 120.00315 * 53.83732 * 9 7 2 11 11 O 1.21302 * 119.99923 * 185.52175 * 10 9 7 12 12 C 1.50696 * 120.00217 * 5.52079 * 10 9 7 13 13 H 1.08999 * 109.68125 * 326.01025 * 12 10 9 14 14 C 1.53101 * 109.57784 * 205.68038 * 12 10 9 15 15 C 1.52583 * 109.95430 * 177.16525 * 14 12 10 16 16 C 1.52840 * 110.79730 * 70.69467 * 15 14 12 17 17 C 1.53098 * 109.81707 * 289.41091 * 16 15 14 18 18 S 1.81747 * 108.94631 * 62.95421 * 17 16 15 19 19 C 1.46505 * 119.99456 * 233.83786 * 9 7 2 20 20 C 1.54268 * 110.03247 * 57.90549 * 19 9 7 21 21 C 1.54960 * 104.16153 * 217.13252 * 20 19 9 22 22 C 1.54896 * 102.77527 * 37.89203 * 21 20 19 23 23 C 1.53874 * 110.03278 * 300.68880 * 19 9 7 24 24 H 0.97002 * 119.99908 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.39068 * 297.32087 * 14 12 10 26 26 H 1.09002 * 109.38450 * 57.02507 * 14 12 10 27 27 H 1.08996 * 109.22403 * 190.99368 * 15 14 12 28 28 H 1.08992 * 109.22813 * 310.40353 * 15 14 12 29 29 H 1.09002 * 109.57062 * 169.23706 * 16 15 14 30 30 H 1.08998 * 109.35142 * 49.44993 * 16 15 14 31 31 H 1.08998 * 109.57842 * 303.07659 * 17 16 15 32 32 H 1.08998 * 109.57441 * 182.82353 * 17 16 15 33 33 H 1.09002 * 110.01773 * 179.29983 * 19 9 7 34 34 H 1.08994 * 110.48900 * 335.78505 * 20 19 9 35 35 H 1.09007 * 110.48192 * 98.42807 * 20 19 9 36 36 H 1.08998 * 110.72402 * 279.58075 * 21 20 19 37 37 H 1.09001 * 110.76509 * 156.22589 * 21 20 19 38 38 H 1.09005 * 110.48520 * 203.40423 * 22 21 20 39 39 H 1.08994 * 110.48498 * 80.75897 * 22 21 20 40 40 H 1.09000 * 110.03170 * 238.57314 * 23 19 9 41 41 H 1.08997 * 110.03212 * 359.95392 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5239 2.0301 -1.3997 5 1 1.4317 2.6607 0.6714 6 1 3.5312 1.4485 0.7282 7 6 2.0088 -1.2034 0.0005 8 1 1.5155 -2.1118 -0.3121 9 7 3.3205 -1.2374 0.3981 10 6 3.6748 -0.7327 1.5964 11 8 4.8459 -0.6713 1.9063 12 6 2.6160 -0.2446 2.5513 13 1 1.7882 0.1896 1.9908 14 6 3.2142 0.8118 3.4842 15 6 2.1324 1.3628 4.4084 16 6 1.7136 0.3148 5.4390 17 6 0.9272 -0.8043 4.7512 18 16 2.0105 -1.6358 3.5520 19 6 4.3369 -1.8225 -0.4799 20 6 4.3466 -1.0909 -1.8380 21 6 4.6170 -2.2135 -2.8714 22 6 3.8087 -3.4057 -2.3016 23 6 3.9955 -3.2937 -0.7743 24 1 -0.4850 0.8401 -0.0004 25 1 4.0056 0.3600 4.0822 26 1 3.6310 1.6249 2.8898 27 1 2.5166 2.2412 4.9269 28 1 1.2640 1.6477 3.8146 29 1 1.0886 0.7810 6.2006 30 1 2.6029 -0.1044 5.9097 31 1 0.0664 -0.3809 4.2337 32 1 0.5877 -1.5234 5.4966 33 1 5.3188 -1.7536 -0.0116 34 1 3.3800 -0.6238 -2.0266 35 1 5.1427 -0.3469 -1.8648 36 1 5.6798 -2.4520 -2.9126 37 1 4.2451 -1.9302 -3.8561 38 1 4.2125 -4.3499 -2.6671 39 1 2.7551 -3.3128 -2.5649 40 1 4.8120 -3.9387 -0.4497 41 1 3.0740 -3.5726 -0.2633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157658291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:42 Heat of formation + Delta-G solvation = -44.273729 kcal Electronic energy + Delta-G solvation = -21934.019749 eV Core-core repulsion = 18939.466895 eV Total energy + Delta-G solvation = -2994.552854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42508 -37.19114 -35.95356 -34.23185 -31.89860 -31.10006 -28.08330 -27.86049 -26.53352 -24.63761 -23.06357 -20.51084 -20.10485 -19.75172 -19.30692 -17.14105 -16.62810 -15.85890 -15.30767 -14.77256 -14.62684 -14.42791 -13.95132 -13.60128 -13.55345 -13.08284 -13.02735 -12.61844 -12.56290 -12.29127 -11.79204 -11.36734 -11.27996 -11.04333 -10.91570 -10.84441 -10.70728 -10.57246 -10.49581 -10.43357 -10.32879 -10.07593 -10.01797 -9.79133 -9.18695 -9.01515 -8.57450 -7.54318 -6.91615 -6.51844 -4.23949 2.13491 3.03044 3.08305 3.13772 3.23978 3.97041 4.03878 4.30999 4.81735 4.97990 5.03519 5.21987 5.26823 5.28079 5.40307 5.49328 5.64383 5.72847 5.86923 5.99993 6.02952 6.08083 6.10224 6.16080 6.17060 6.20896 6.25058 6.32008 6.34110 6.41287 6.42533 6.45123 6.60085 6.70081 6.84407 6.96206 7.04741 7.65322 7.79192 8.47316 8.92785 9.23470 9.67710 10.56507 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.007658 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.648009 B = 3655.445869 C = 4022.764064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.076 3.924 3 Si 0.834 3.166 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.328 4.328 8 H 0.102 0.898 9 N -0.460 5.460 10 C 0.516 3.484 11 O -0.585 6.585 12 C -0.067 4.067 13 H 0.123 0.877 14 C -0.110 4.110 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.092 4.092 18 S -0.216 6.216 19 C 0.130 3.870 20 C -0.132 4.132 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.125 4.125 24 H 0.274 0.726 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -0.105 3.287 4.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.132 4.132 3 Si 0.658 3.342 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.456 4.456 8 H 0.119 0.881 9 N -0.181 5.181 10 C 0.304 3.696 11 O -0.469 6.469 12 C -0.198 4.198 13 H 0.140 0.860 14 C -0.149 4.149 15 C -0.168 4.168 16 C -0.157 4.157 17 C -0.241 4.241 18 S 0.011 5.989 19 C 0.027 3.973 20 C -0.170 4.170 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.164 4.164 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.000 -1.098 3.328 4.613 hybrid contribution -0.199 2.362 -0.149 2.375 sum 2.802 1.264 3.179 4.422 Atomic orbital electron populations 1.69743 1.05918 1.27880 1.45122 1.25552 0.95100 0.97765 0.94746 0.87473 0.82137 0.84717 0.79850 1.19651 1.20404 1.17425 1.18809 0.83898 0.95739 1.47179 0.88051 1.43729 1.07740 1.54045 1.12542 1.19614 0.87985 0.79870 0.82130 1.90526 1.19125 1.59894 1.77311 1.23380 1.02154 0.96751 0.97481 0.85959 1.21674 0.98167 0.97746 0.97309 1.21599 0.99232 0.98410 0.97517 1.21748 1.00324 0.95834 0.97753 1.23451 1.00177 1.00776 0.99654 1.86684 1.59546 1.15571 1.37112 1.21693 0.92866 0.92212 0.90550 1.22698 1.02481 0.97396 0.94418 1.22413 0.99225 0.95957 0.98146 1.22266 1.00491 0.97116 0.95547 1.22377 1.01850 0.96188 0.95977 0.91515 0.89987 0.91387 0.91335 0.91872 0.91392 0.90771 0.89853 0.88227 0.89972 0.89620 0.92862 0.92285 0.92143 0.92732 0.91303 0.92735 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.49 13.96 55.50 0.77 -21.72 16 2 C 0.08 1.92 3.75 -17.47 -0.07 1.85 16 3 Si 0.83 19.78 24.89 -169.99 -4.23 15.55 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.25 -6.12 4.77 56.52 0.27 -5.85 16 7 C -0.33 -8.22 7.33 -14.93 -0.11 -8.33 16 8 H 0.10 2.73 7.39 -52.49 -0.39 2.34 16 9 N -0.46 -10.94 1.85 -106.54 -0.20 -11.13 16 10 C 0.52 12.68 4.35 -10.99 -0.05 12.63 16 11 O -0.58 -15.30 15.53 5.54 0.09 -15.22 16 12 C -0.07 -1.49 1.30 -27.83 -0.04 -1.52 16 13 H 0.12 2.93 3.65 -51.93 -0.19 2.74 16 14 C -0.11 -2.14 4.38 -26.89 -0.12 -2.26 16 15 C -0.13 -2.05 5.61 -27.03 -0.15 -2.20 16 16 C -0.12 -1.64 5.78 -26.76 -0.15 -1.80 16 17 C -0.09 -1.45 6.44 37.21 0.24 -1.21 16 18 S -0.22 -4.43 21.69 -107.50 -2.33 -6.77 16 19 C 0.13 2.74 3.29 -66.81 -0.22 2.53 16 20 C -0.13 -2.53 6.42 -25.03 -0.16 -2.69 16 21 C -0.12 -1.86 6.91 -24.70 -0.17 -2.04 16 22 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 23 C -0.13 -2.32 6.26 -25.61 -0.16 -2.48 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 25 H 0.08 1.61 7.88 -51.93 -0.41 1.20 16 26 H 0.07 1.37 7.11 -51.93 -0.37 1.00 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 34 H 0.09 1.83 6.68 -51.93 -0.35 1.49 16 35 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.57 6.93 -51.93 -0.36 1.21 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -27.96 318.03 -9.19 -37.15 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.76 Total: 6.89 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.33 Total: -9.55 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.58 Total: -32.85 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.23 Total: 15.55 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -2.33 Total: -6.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.96 -9.19 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157658291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.123 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds