Wall clock time and date at job start Tue Mar 31 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47203 * 269.99915 * 3 2 1 5 5 H 1.48506 * 109.47286 * 30.00273 * 3 2 1 6 6 H 1.48509 * 109.46962 * 149.99793 * 3 2 1 7 7 C 1.38952 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99252 * 167.90077 * 7 2 1 9 9 N 1.37086 * 120.00417 * 347.90089 * 7 2 1 10 10 C 1.34773 * 120.00005 * 302.57486 * 9 7 2 11 11 O 1.21301 * 119.99886 * 179.97438 * 10 9 7 12 12 C 1.50694 * 120.00393 * 359.97438 * 10 9 7 13 13 H 1.09000 * 109.57383 * 30.00111 * 12 10 9 14 14 C 1.53101 * 109.57807 * 150.25677 * 12 10 9 15 15 C 1.52566 * 109.96413 * 182.70227 * 14 12 10 16 16 C 1.52583 * 110.84391 * 289.52138 * 15 14 12 17 17 C 1.53095 * 109.95727 * 70.62502 * 16 15 14 18 18 S 1.81744 * 108.84496 * 296.97734 * 17 16 15 19 19 C 1.46505 * 120.00028 * 122.57172 * 9 7 2 20 20 C 1.53876 * 110.03187 * 302.15104 * 19 9 7 21 21 C 1.54275 * 106.63687 * 119.25753 * 20 19 9 22 22 C 1.54964 * 104.15947 * 336.44922 * 21 20 19 23 23 C 1.54264 * 110.03100 * 59.32158 * 19 9 7 24 24 H 0.97005 * 119.99730 * 355.59064 * 1 2 3 25 25 H 1.08994 * 109.38698 * 302.98201 * 14 12 10 26 26 H 1.08996 * 109.38996 * 62.69200 * 14 12 10 27 27 H 1.08998 * 109.20527 * 169.13468 * 15 14 12 28 28 H 1.09012 * 109.09639 * 49.82790 * 15 14 12 29 29 H 1.08999 * 109.38584 * 310.47971 * 16 15 14 30 30 H 1.08996 * 109.38886 * 190.78069 * 16 15 14 31 31 H 1.08998 * 109.57293 * 177.16811 * 17 16 15 32 32 H 1.09003 * 109.68108 * 56.85086 * 17 16 15 33 33 H 1.09002 * 110.05780 * 180.73371 * 19 9 7 34 34 H 1.08995 * 110.03025 * 238.56537 * 20 19 9 35 35 H 1.08999 * 110.03319 * 359.95490 * 20 19 9 36 36 H 1.09008 * 110.48238 * 95.09431 * 21 20 19 37 37 H 1.09001 * 110.48492 * 217.73489 * 21 20 19 38 38 H 1.09003 * 110.71783 * 279.56725 * 22 21 20 39 39 H 1.09003 * 110.91877 * 156.29357 * 22 21 20 40 40 H 1.09001 * 110.48666 * 23.00083 * 23 19 9 41 41 H 1.08996 * 110.48816 * 145.51560 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0708 -1.2138 -0.1955 9 7 1.3462 -2.3773 0.2499 10 6 0.6608 -2.5331 1.3999 11 8 0.0742 -3.5717 1.6203 12 6 0.6233 -1.4172 2.4119 13 1 0.7030 -0.4578 1.9007 14 6 -0.6932 -1.4754 3.1912 15 6 -0.7698 -0.3096 4.1723 16 6 0.2214 -0.4973 5.3170 17 6 1.6523 -0.3128 4.8048 18 16 2.0068 -1.6037 3.5757 19 6 1.3830 -3.4625 -0.7337 20 6 0.8338 -2.9690 -2.0838 21 6 1.9770 -3.1222 -3.1083 22 6 3.2641 -3.1058 -2.2453 23 6 2.8411 -3.8994 -0.9842 24 1 -0.4850 0.8376 0.0646 25 1 -1.5291 -1.4196 2.4940 26 1 -0.7459 -2.4140 3.7429 27 1 -1.7795 -0.2482 4.5781 28 1 -0.5381 0.6160 3.6450 29 1 0.1114 -1.4999 5.7301 30 1 0.0181 0.2377 6.0958 31 1 2.3517 -0.3983 5.6364 32 1 1.7530 0.6692 4.3425 33 1 0.7953 -4.3090 -0.3785 34 1 -0.0203 -3.5761 -2.3838 35 1 0.5391 -1.9224 -2.0069 36 1 1.8873 -4.0688 -3.6413 37 1 1.9758 -2.2872 -3.8089 38 1 3.5404 -2.0842 -1.9844 39 1 4.0841 -3.6068 -2.7599 40 1 3.4708 -3.6312 -0.1358 41 1 2.8912 -4.9720 -1.1713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157658434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:45 Heat of formation + Delta-G solvation = -50.652508 kcal Electronic energy + Delta-G solvation = -21944.231720 eV Core-core repulsion = 18949.402262 eV Total energy + Delta-G solvation = -2994.829458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.09446 -36.96512 -35.78814 -34.10263 -31.50808 -30.73780 -27.90492 -27.59604 -26.49993 -24.65987 -22.92585 -20.39948 -19.89926 -19.50084 -19.22352 -16.89833 -16.14775 -15.63383 -15.19714 -14.63306 -14.41024 -14.35734 -14.07777 -13.51282 -13.36191 -13.01630 -12.72540 -12.52267 -12.26351 -11.96103 -11.46008 -11.26880 -11.19346 -10.88397 -10.76877 -10.70621 -10.55410 -10.44778 -10.38366 -10.34270 -10.31067 -10.08093 -9.96225 -9.68783 -9.14420 -8.75004 -8.24573 -7.24794 -6.87377 -6.41255 -4.28157 2.27685 3.07315 3.17358 3.21016 3.23439 4.03689 4.33991 4.72585 4.91853 5.05843 5.14011 5.37790 5.41195 5.47427 5.60193 5.67635 5.73265 5.85338 6.00671 6.13417 6.15685 6.27827 6.28650 6.32881 6.36912 6.39572 6.47221 6.50881 6.56738 6.61641 6.64793 6.78103 6.81975 6.96353 7.01962 7.12453 7.36013 7.44416 8.04482 8.61301 8.89864 9.54809 9.98647 10.61225 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.007964 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.061097 B = 3515.026011 C = 4161.276271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.047 3.953 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.317 4.317 8 H 0.083 0.917 9 N -0.440 5.440 10 C 0.541 3.459 11 O -0.599 6.599 12 C -0.052 4.052 13 H 0.143 0.857 14 C -0.099 4.099 15 C -0.126 4.126 16 C -0.118 4.118 17 C -0.087 4.087 18 S -0.252 6.252 19 C 0.134 3.866 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.124 4.124 24 H 0.270 0.730 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 1.128 2.898 3.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.158 4.158 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.446 4.446 8 H 0.101 0.899 9 N -0.160 5.160 10 C 0.328 3.672 11 O -0.484 6.484 12 C -0.183 4.183 13 H 0.160 0.840 14 C -0.138 4.138 15 C -0.164 4.164 16 C -0.157 4.157 17 C -0.236 4.236 18 S -0.026 6.026 19 C 0.030 3.970 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.538 0.029 2.883 3.842 hybrid contribution -0.675 1.959 -0.115 2.075 sum 1.863 1.988 2.768 3.884 Atomic orbital electron populations 1.69983 1.05770 1.28036 1.46373 1.25555 0.95229 0.99856 0.95121 0.86389 0.80504 0.82008 0.78887 1.20033 1.20693 1.18626 1.19150 0.92489 0.82619 1.50339 0.89925 1.43271 1.46255 1.13357 1.13104 1.19460 0.79678 0.85949 0.82108 1.90500 1.48891 1.29742 1.79277 1.23562 0.93305 1.06225 0.95161 0.84011 1.21471 0.96813 0.98162 0.97376 1.21511 0.99024 0.99415 0.96403 1.21701 0.93540 1.02500 0.97981 1.23389 0.99802 1.00462 0.99935 1.86725 1.39278 1.48215 1.28369 1.21562 0.94823 0.91166 0.89484 1.22406 0.96406 1.03659 0.93806 1.22263 0.95825 0.99813 0.97498 1.22485 0.96267 1.01097 0.95638 1.22579 0.97380 0.98134 0.98201 0.91998 0.90868 0.91132 0.91730 0.92043 0.90868 0.91732 0.88532 0.90447 0.90557 0.93546 0.88911 0.93126 0.92580 0.90483 0.93297 0.91543 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.52 11.67 55.50 0.65 -20.87 16 2 C 0.05 1.12 3.38 -17.47 -0.06 1.06 16 3 Si 0.90 18.82 29.57 -169.99 -5.03 13.80 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.32 -7.62 6.50 -14.94 -0.10 -7.72 16 8 H 0.08 1.99 6.67 -52.49 -0.35 1.64 16 9 N -0.44 -10.72 2.27 -106.54 -0.24 -10.96 16 10 C 0.54 13.81 6.18 -10.99 -0.07 13.74 16 11 O -0.60 -16.58 15.59 5.54 0.09 -16.50 16 12 C -0.05 -1.17 1.97 -27.83 -0.05 -1.23 16 13 H 0.14 3.39 4.04 -51.93 -0.21 3.18 16 14 C -0.10 -2.01 4.59 -26.90 -0.12 -2.13 16 15 C -0.13 -2.05 5.61 -27.17 -0.15 -2.20 16 16 C -0.12 -1.71 5.75 -26.90 -0.15 -1.86 16 17 C -0.09 -1.37 6.45 37.21 0.24 -1.13 16 18 S -0.25 -5.19 21.69 -107.50 -2.33 -7.52 16 19 C 0.13 2.96 3.35 -66.81 -0.22 2.73 16 20 C -0.12 -2.55 6.26 -25.61 -0.16 -2.71 16 21 C -0.12 -1.99 6.84 -25.03 -0.17 -2.16 16 22 C -0.12 -2.02 6.54 -24.70 -0.16 -2.18 16 23 C -0.12 -2.36 6.05 -25.07 -0.15 -2.51 16 24 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 25 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.07 1.48 7.87 -51.93 -0.41 1.07 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.04 8.08 -51.92 -0.42 0.62 16 29 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 2.19 7.28 -51.93 -0.38 1.81 16 36 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.43 6.61 -51.93 -0.34 1.09 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.34 8.01 -51.93 -0.42 0.93 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -27.12 324.87 -9.97 -37.09 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.67 Total: 8.38 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.34 Total: -8.31 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.41 Total: -31.84 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.09 Total: -16.50 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -2.33 Total: -7.52 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.12 -9.97 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157658434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.562 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds