Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38164 * 120.03130 * 2 1 4 4 C 1.38245 * 120.06018 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.11063 * 0.02562 * 4 3 2 6 6 C 1.38127 * 120.05279 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.02617 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.47188 * 259.99867 * 7 6 5 9 9 C 1.38850 * 120.00393 * 180.02562 * 8 7 6 10 10 C 1.39578 * 119.84067 * 359.72732 * 9 8 7 11 11 C 1.36339 * 120.15863 * 179.72321 * 10 9 8 12 12 C 1.40887 * 119.83705 * 0.54497 * 11 10 9 13 13 C 1.41134 * 120.15641 * 179.70068 * 12 11 10 14 14 H 1.07997 * 120.00249 * 204.62563 * 13 12 11 15 15 C 1.39865 * 119.99757 * 24.63169 * 13 12 11 16 16 N 1.30908 * 120.00152 * 17.95732 * 15 13 12 17 17 Si 1.86803 * 119.99891 * 197.96487 * 15 13 12 18 18 H 1.48501 * 109.47146 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47207 * 119.99784 * 17 15 13 20 20 H 1.48499 * 109.46988 * 239.99835 * 17 15 13 21 21 C 1.40887 * 119.68824 * 359.72778 * 12 11 10 22 22 C 1.36338 * 119.83691 * 359.97438 * 21 12 11 23 23 C 1.38714 * 120.03023 * 179.97438 * 2 1 3 24 24 O 1.35900 * 120.05207 * 0.03964 * 23 2 1 25 25 H 1.08998 * 109.47426 * 89.99357 * 1 2 3 26 26 H 1.09000 * 109.46842 * 210.00079 * 1 2 3 27 27 H 1.09009 * 109.46674 * 329.99273 * 1 2 3 28 28 H 1.08008 * 119.97138 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.94520 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.97105 * 179.70342 * 5 4 3 31 31 H 1.09002 * 109.47321 * 19.99549 * 7 6 5 32 32 H 1.08992 * 109.47685 * 139.99999 * 7 6 5 33 33 H 0.97000 * 119.99625 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.91685 * 359.97333 * 10 9 8 35 35 H 1.07993 * 120.07915 * 180.27584 * 11 10 9 36 36 H 0.96998 * 119.99403 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.07914 * 179.97438 * 21 12 11 38 38 H 1.08002 * 119.91969 * 179.97438 * 22 21 12 39 39 H 0.96704 * 114.00506 * 90.00170 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2753 0.0009 -0.0016 6 6 3.5887 -1.1976 -0.0016 7 6 4.3459 -2.5005 -0.0034 8 7 4.3824 -3.0424 -1.3641 9 6 5.0295 -4.2448 -1.6155 10 6 5.6491 -4.9318 -0.5703 11 6 6.2815 -6.1159 -0.8089 12 6 6.3185 -6.6400 -2.1161 13 6 6.9767 -7.8620 -2.3717 14 1 7.3557 -8.0747 -3.3604 15 6 7.1381 -8.7975 -1.3446 16 7 6.3991 -8.7203 -0.2668 17 14 8.4082 -10.1572 -1.5108 18 1 9.1074 -10.0248 -2.8142 19 1 9.3949 -10.0506 -0.4062 20 1 7.7316 -11.4774 -1.4445 21 6 5.6958 -5.9381 -3.1671 22 6 5.0618 -4.7582 -2.9128 23 6 2.2012 -1.2009 0.0005 24 8 1.5234 -2.3788 0.0002 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6585 2.1316 -0.0004 29 1 4.1195 2.1329 -0.0010 30 1 5.3552 0.0041 -0.0069 31 1 5.3639 -2.3296 0.3470 32 1 3.8488 -3.2107 0.6572 33 1 3.9544 -2.5610 -2.0893 34 1 5.6241 -4.5264 0.4304 35 1 6.7567 -6.6486 0.0015 36 1 6.5109 -9.3694 0.4452 37 1 5.7206 -6.3339 -4.1716 38 1 4.5843 -4.2189 -3.7176 39 1 1.3277 -2.7199 -0.8832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158707587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -2.133409 kcal Electronic energy + Delta-G solvation = -20808.290274 eV Core-core repulsion = 17680.120810 eV Total energy + Delta-G solvation = -3128.169464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16763 -37.87715 -36.64785 -35.28005 -33.43679 -32.34416 -30.51183 -29.43997 -28.45470 -26.98310 -25.81431 -23.85447 -22.07366 -21.46896 -20.60879 -19.83895 -18.25873 -17.18766 -16.46611 -16.16185 -15.69275 -15.24019 -14.94272 -14.44802 -13.96836 -13.78631 -13.41470 -13.36930 -13.02165 -12.65707 -12.52969 -12.43226 -12.11043 -11.98449 -11.77617 -11.68634 -11.31999 -11.19204 -11.01961 -10.76910 -10.44944 -10.36613 -9.68114 -9.29922 -9.22113 -8.81119 -8.62232 -8.51384 -7.47537 -6.62598 -6.37512 -4.01580 1.11660 1.16335 2.92012 3.11839 3.16811 3.22133 3.36548 3.43806 4.07122 4.20467 4.48891 4.65684 4.69254 4.78757 4.86459 5.10010 5.31244 5.41562 5.42820 5.56070 5.72016 5.80468 5.87714 5.98394 6.11158 6.27427 6.30700 6.32577 6.34905 6.52263 6.71564 6.93709 6.95903 7.21950 7.37450 7.56351 7.64779 7.70835 7.85789 8.17387 8.30188 8.50045 8.70969 8.81475 9.08024 9.17019 10.39166 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.003087 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.131013 B = 9067.625544 C = 9161.868073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C -0.108 4.108 4 C -0.130 4.130 5 C -0.095 4.095 6 C -0.116 4.116 7 C 0.182 3.818 8 N -0.756 5.756 9 C 0.092 3.908 10 C -0.163 4.163 11 C -0.124 4.124 12 C 0.075 3.925 13 C -0.467 4.467 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.807 5.807 17 Si 0.902 3.098 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.187 4.187 22 C -0.158 4.158 23 C 0.121 3.879 24 O -0.490 6.490 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.381 0.619 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.275 0.725 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 16.344 1.446 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.126 4.126 4 C -0.148 4.148 5 C -0.113 4.113 6 C -0.117 4.117 7 C 0.057 3.943 8 N -0.392 5.392 9 C -0.004 4.004 10 C -0.184 4.184 11 C -0.144 4.144 12 C 0.072 3.928 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.434 5.434 17 Si 0.727 3.273 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.207 4.207 22 C -0.181 4.181 23 C 0.076 3.924 24 O -0.300 6.300 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.213 0.787 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.785 16.234 2.474 18.174 hybrid contribution 0.345 -0.539 -0.720 0.963 sum -7.440 15.696 1.754 17.458 Atomic orbital electron populations 1.20675 0.90768 1.03111 1.02212 1.20234 0.96697 0.92592 1.02331 1.20927 0.94202 0.97020 1.00432 1.21126 0.94197 0.98054 1.01395 1.21046 1.00172 0.91348 0.98760 1.20437 0.93178 0.96132 1.01921 1.19806 0.97703 0.90073 0.86752 1.43796 1.64990 1.23847 1.06571 1.17327 1.01322 0.88094 0.93684 1.20099 1.04682 0.97870 0.95795 1.20935 1.01342 0.94012 0.98114 1.17499 0.91449 0.92744 0.91141 1.19394 1.33321 1.00321 0.96756 0.90929 1.25800 0.95001 0.98578 0.94711 1.69869 1.32664 1.33862 1.07016 0.86373 0.81224 0.80358 0.79343 1.18651 1.19975 1.20292 1.20532 1.04401 0.97441 0.98369 1.19781 1.06237 0.98564 0.93477 1.18186 0.89212 0.85097 0.99903 1.84755 1.76020 1.35656 1.33558 0.91424 0.90803 0.91666 0.85907 0.85856 0.85502 0.92808 0.91918 0.78651 0.89420 0.86397 0.91381 0.89093 0.89715 0.75216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.79 36.01 0.35 -0.61 16 2 C -0.12 -1.30 5.89 -104.47 -0.62 -1.91 16 3 C -0.11 -1.06 9.70 -39.61 -0.38 -1.44 16 4 C -0.13 -1.30 10.04 -39.56 -0.40 -1.69 16 5 C -0.09 -1.11 9.66 -39.60 -0.38 -1.49 16 6 C -0.12 -1.55 5.26 -104.48 -0.55 -2.10 16 7 C 0.18 2.86 4.68 -5.19 -0.02 2.84 16 8 N -0.76 -13.12 5.69 -59.67 -0.34 -13.46 16 9 C 0.09 2.01 6.67 -83.69 -0.56 1.45 16 10 C -0.16 -3.85 9.23 -39.77 -0.37 -4.22 16 11 C -0.12 -3.29 8.64 -39.26 -0.34 -3.63 16 12 C 0.07 2.03 5.57 -106.79 -0.60 1.44 16 13 C -0.47 -12.78 9.03 -37.87 -0.34 -13.12 16 14 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 15 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 16 N -0.81 -21.63 10.96 55.54 0.61 -21.02 16 17 Si 0.90 19.38 29.60 -169.99 -5.03 14.35 16 18 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 22 C -0.16 -3.55 9.82 -39.77 -0.39 -3.94 16 23 C 0.12 1.55 6.65 -39.22 -0.26 1.29 16 24 O -0.49 -6.35 11.79 -19.42 -0.23 -6.58 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 27 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 28 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.36 8.04 -52.49 -0.42 0.93 16 31 H 0.05 0.86 7.78 -51.93 -0.40 0.45 16 32 H 0.06 1.09 7.65 -51.93 -0.40 0.70 16 33 H 0.38 5.96 8.46 -40.82 -0.35 5.61 16 34 H 0.09 1.92 6.68 -52.49 -0.35 1.57 16 35 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 36 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.39 3.93 9.06 45.56 0.41 4.34 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -29.61 330.89 -9.63 -39.25 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.30 Total: 12.82 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -5.33 Total: -30.34 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.27 Total: -34.48 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.23 Total: -6.58 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.61 -9.63 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158707587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds