Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 C 1.52998 * 109.46883 * 240.00250 * 2 1 3 5 5 C 1.50702 * 109.47283 * 59.99746 * 4 2 1 6 6 H 1.07998 * 119.99582 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00077 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99687 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47194 * 90.00199 * 9 7 5 11 11 H 1.48499 * 109.46865 * 210.00047 * 9 7 5 12 12 H 1.48494 * 109.47321 * 329.99689 * 9 7 5 13 13 C 1.52997 * 109.47103 * 120.00418 * 2 1 3 14 14 N 1.46903 * 109.47075 * 299.99934 * 13 2 1 15 15 C 1.46898 * 110.99923 * 180.02562 * 14 13 2 16 16 C 1.53009 * 109.46910 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.46727 * 60.00068 * 16 15 14 18 18 O 1.42891 * 109.47159 * 299.99838 * 16 15 14 19 19 C 1.50706 * 109.47028 * 179.97438 * 16 15 14 20 20 C 1.38422 * 122.53644 * 265.00515 * 19 16 15 21 21 C 1.33390 * 114.91870 * 180.02562 * 20 19 16 22 22 S 1.75890 * 109.59395 * 359.97438 * 21 20 19 23 23 C 1.33383 * 122.53751 * 85.02331 * 19 16 15 24 24 H 1.09001 * 109.46675 * 299.99994 * 1 2 3 25 25 H 1.08997 * 109.47334 * 59.99441 * 1 2 3 26 26 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46960 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47264 * 299.99961 * 3 2 1 29 29 H 1.09004 * 109.47092 * 60.00842 * 3 2 1 30 30 H 1.09003 * 109.46908 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47135 * 300.00043 * 4 2 1 32 32 H 0.96999 * 120.00159 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47046 * 180.02562 * 13 2 1 34 34 H 1.08999 * 109.47228 * 59.99766 * 13 2 1 35 35 H 1.00893 * 111.00326 * 56.04670 * 14 13 2 36 36 H 1.09002 * 109.47370 * 60.00114 * 15 14 13 37 37 H 1.08997 * 109.47108 * 299.99542 * 15 14 13 38 38 H 0.96694 * 114.00641 * 300.00054 * 18 16 15 39 39 H 1.08000 * 122.54685 * 0.04229 * 20 19 16 40 40 H 1.07998 * 125.20728 * 180.02562 * 21 20 19 41 41 H 1.07996 * 125.20606 * 359.94742 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3995 -5.2571 10 1 2.2272 1.4412 -5.6607 11 1 1.0842 -0.5793 -6.3616 12 1 -0.0593 1.0369 -4.9615 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4487 15 6 2.0219 -0.6947 3.6702 16 6 1.4933 0.0538 4.8955 17 1 0.4034 0.0536 4.8791 18 8 1.9698 1.4008 4.8730 19 6 1.9765 -0.6296 6.1488 20 6 1.2170 -1.5691 6.8246 21 6 1.7919 -2.0771 7.9157 22 16 3.3808 -1.3554 8.1356 23 6 3.1682 -0.3748 6.6910 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -1.7488 -1.2493 32 1 2.8615 -1.8822 -4.7337 33 1 3.1301 -0.7209 1.2494 34 1 1.6767 -1.7490 1.2491 35 1 0.5439 0.0412 2.4402 36 1 3.1118 -0.6942 3.6868 37 1 1.6587 -1.7223 3.6872 38 1 2.9336 1.4773 4.8858 39 1 0.2335 -1.8683 6.4934 40 1 1.3499 -2.8187 8.5645 41 1 3.8922 0.3258 6.3020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174419288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -32.444876 kcal Electronic energy + Delta-G solvation = -19928.197730 eV Core-core repulsion = 16934.157814 eV Total energy + Delta-G solvation = -2994.039916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41232 -37.55813 -36.19686 -33.97173 -32.14273 -30.18695 -28.39655 -26.85997 -26.29025 -25.32598 -23.83739 -22.27219 -21.77148 -19.17575 -18.29325 -17.90613 -16.85256 -16.21708 -15.49394 -15.42303 -14.79464 -14.36711 -14.07641 -13.94941 -13.42048 -13.19396 -13.13632 -12.77710 -12.59155 -12.35501 -12.12232 -11.96860 -11.68754 -11.49843 -11.02244 -10.94134 -10.85180 -10.73840 -10.46689 -10.32636 -10.19391 -10.02836 -9.65421 -9.11698 -8.99272 -8.82056 -8.64541 -8.30104 -8.05678 -5.94686 -3.94620 0.70756 1.36570 1.68353 2.37035 3.34738 3.41152 3.44089 4.22892 4.37622 4.50707 4.66700 4.84188 4.95749 5.06844 5.15165 5.30171 5.41209 5.54584 5.64758 5.72433 5.79371 5.85012 6.01670 6.06299 6.20848 6.26380 6.36072 6.53609 6.71398 6.82150 6.86779 7.23365 7.23932 7.30045 7.40042 7.54989 7.69975 7.73512 7.87749 8.05835 8.50502 9.10865 9.68128 11.17063 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.042487 B = 0.002749 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.871210 B =10184.719324 C =10339.215442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.677 5.677 15 C 0.033 3.967 16 C 0.171 3.829 17 H 0.104 0.896 18 O -0.539 6.539 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.212 4.212 22 S 0.095 5.905 23 C -0.203 4.203 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.339 0.661 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.371 0.629 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 -0.009 23.744 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.309 5.309 15 C -0.098 4.098 16 C 0.108 3.892 17 H 0.122 0.878 18 O -0.344 6.344 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.348 4.348 22 S 0.358 5.642 23 C -0.338 4.338 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.218 0.782 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.489 0.288 24.692 24.698 hybrid contribution -1.282 -0.636 -1.917 2.392 sum -0.794 -0.348 22.775 22.791 Atomic orbital electron populations 1.21772 0.96095 1.00292 1.00497 1.20620 0.94730 0.96180 0.94285 1.21595 0.99671 0.95760 1.00284 1.19126 0.96076 0.94956 0.90238 1.21247 1.30728 1.11847 0.90605 0.92267 1.25018 0.95440 0.95115 0.99062 1.69965 1.37387 1.23226 1.23263 0.86661 0.79248 0.79420 0.83080 1.20776 1.21417 1.19933 1.22123 0.99711 0.94588 0.89404 1.60476 1.16414 1.53386 1.00594 1.22607 1.00911 0.95678 0.90558 1.20487 0.98819 0.81591 0.88253 0.87797 1.86630 1.26510 1.24593 1.96647 1.19707 0.94732 0.99939 0.99985 1.20058 1.01658 0.98238 0.95677 1.25613 0.98740 1.07101 1.03317 1.84284 1.16752 1.36965 1.26167 1.25351 1.01340 1.06435 1.00718 0.94717 0.91709 0.94182 0.94294 0.92775 0.93637 0.96735 0.96973 0.93187 0.91700 0.95999 0.84180 0.90898 0.94715 0.78165 0.84076 0.81807 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.21 4.65 -3.82 -0.02 1.19 16 14 N -0.68 -9.67 5.58 -113.78 -0.63 -10.30 16 15 C 0.03 0.39 5.33 -3.82 -0.02 0.37 16 16 C 0.17 1.78 3.50 -27.88 -0.10 1.69 16 17 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 18 O -0.54 -6.23 13.03 -35.23 -0.46 -6.69 16 19 C -0.13 -1.25 4.91 -106.25 -0.52 -1.77 16 20 C -0.13 -1.11 9.96 -41.21 -0.41 -1.52 16 21 C -0.21 -1.70 11.23 29.04 0.33 -1.37 16 22 S 0.09 0.76 23.34 -107.50 -2.51 -1.75 16 23 C -0.20 -1.78 10.43 29.04 0.30 -1.48 16 24 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 29 H 0.04 0.82 7.60 -51.93 -0.39 0.42 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.72 6.77 -39.30 -0.27 4.46 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.37 3.26 7.79 45.56 0.35 3.62 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.16 1.15 7.15 -52.49 -0.38 0.77 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -30.66 342.28 -8.93 -39.60 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.79 Total: 3.81 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.41 Total: -20.25 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.10 Total: -36.57 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.46 Total: -6.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.66 -8.93 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174419288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.154 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds