Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 C 1.52992 * 109.47221 * 239.99514 * 2 1 3 5 5 C 1.50704 * 109.46949 * 59.99856 * 4 2 1 6 6 H 1.07997 * 120.00027 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99921 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99728 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46814 * 89.99698 * 9 7 5 11 11 H 1.48501 * 109.47105 * 209.99849 * 9 7 5 12 12 H 1.48500 * 109.47186 * 330.00149 * 9 7 5 13 13 C 1.53007 * 109.46990 * 119.99433 * 2 1 3 14 14 N 1.46904 * 109.47139 * 300.00498 * 13 2 1 15 15 C 1.46900 * 110.99363 * 179.97438 * 14 13 2 16 16 C 1.53005 * 109.46703 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47360 * 305.00314 * 16 15 14 18 18 O 1.42905 * 109.46812 * 65.00350 * 16 15 14 19 19 C 1.50699 * 109.47155 * 184.99995 * 16 15 14 20 20 C 1.38419 * 122.53913 * 100.00288 * 19 16 15 21 21 C 1.33394 * 114.92296 * 179.97438 * 20 19 16 22 22 S 1.75883 * 109.58995 * 359.97438 * 21 20 19 23 23 C 1.33388 * 122.53899 * 279.71210 * 19 16 15 24 24 H 1.09001 * 109.47367 * 299.99710 * 1 2 3 25 25 H 1.08997 * 109.47601 * 60.00212 * 1 2 3 26 26 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46692 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46414 * 299.99951 * 3 2 1 29 29 H 1.08996 * 109.47236 * 59.99674 * 3 2 1 30 30 H 1.08998 * 109.46919 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47580 * 300.00026 * 4 2 1 32 32 H 0.97003 * 120.00035 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46976 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.46638 * 60.00099 * 13 2 1 35 35 H 1.00905 * 110.99485 * 303.94890 * 14 13 2 36 36 H 1.09000 * 109.47077 * 60.00273 * 15 14 13 37 37 H 1.08998 * 109.47656 * 299.99823 * 15 14 13 38 38 H 0.96691 * 114.00079 * 59.99598 * 18 16 15 39 39 H 1.08001 * 122.54328 * 359.95437 * 20 19 16 40 40 H 1.07992 * 125.20447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 125.20731 * 0.02691 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5376 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4332 0.1384 -4.8057 9 14 2.9451 -2.0006 -3.9032 10 1 2.0865 -3.2113 -3.9491 11 1 3.7375 -1.9078 -5.1557 12 1 3.8651 -2.0900 -2.7409 13 6 2.0400 -0.7212 1.2494 14 7 1.5502 -0.0286 2.4488 15 6 2.0208 -0.6951 3.6704 16 6 1.4922 0.0536 4.8956 17 1 1.7820 1.1025 4.8335 18 8 0.0671 -0.0453 4.9360 19 6 2.0735 -0.5551 6.1456 20 6 3.1477 0.0041 6.8160 21 6 3.5381 -0.6599 7.9050 22 16 2.5177 -2.0745 8.1306 23 6 1.5883 -1.6705 6.6931 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9562 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7490 -1.2491 32 1 1.6675 -0.1931 -5.6867 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7488 1.2494 35 1 1.8197 0.9438 2.4402 36 1 3.1107 -0.6952 3.6874 37 1 1.6570 -1.7224 3.6870 38 1 -0.2628 -0.9525 4.9916 39 1 3.6332 0.9094 6.4824 40 1 4.3557 -0.3728 8.5495 41 1 0.7535 -2.2394 6.3113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174419303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -28.893791 kcal Electronic energy + Delta-G solvation = -19968.379941 eV Core-core repulsion = 16974.494011 eV Total energy + Delta-G solvation = -2993.885929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.46054 -37.67525 -36.25804 -34.05364 -32.13798 -30.26980 -28.53578 -27.43511 -26.34382 -25.37866 -23.84448 -22.08509 -21.67323 -19.22483 -18.32787 -17.90788 -16.93385 -16.72248 -15.58127 -15.45480 -14.79642 -14.30273 -14.12367 -13.95977 -13.46075 -13.35108 -13.20649 -12.76575 -12.71495 -12.54535 -12.26782 -12.06705 -11.84469 -11.57081 -11.10206 -11.01137 -10.92457 -10.82299 -10.48673 -10.39401 -10.21268 -9.77149 -9.66841 -9.28114 -9.13728 -8.88796 -8.70398 -8.48438 -8.14132 -5.98589 -3.94585 0.66368 1.32439 1.64282 2.32749 3.32858 3.40404 3.43678 4.16080 4.33726 4.49356 4.61375 4.78875 4.89919 5.00976 5.10287 5.25245 5.34460 5.48480 5.55455 5.63671 5.69550 5.78128 5.90205 6.01962 6.15137 6.16657 6.26429 6.43623 6.63689 6.71427 6.83118 7.10007 7.14911 7.21259 7.29151 7.35454 7.45793 7.51480 7.64982 7.87006 8.61616 9.07705 9.64571 11.14587 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.002962 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.967270 B = 9449.797397 C = 9782.722586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.068 3.932 14 N -0.676 5.676 15 C 0.033 3.967 16 C 0.171 3.829 17 H 0.105 0.895 18 O -0.540 6.540 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.212 4.212 22 S 0.096 5.904 23 C -0.204 4.204 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.340 0.660 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.371 0.629 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -2.891 26.150 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.308 5.308 15 C -0.097 4.097 16 C 0.109 3.891 17 H 0.123 0.877 18 O -0.344 6.344 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.348 4.348 22 S 0.359 5.641 23 C -0.339 4.339 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.218 0.782 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.608 -3.752 27.012 27.396 hybrid contribution 1.753 -0.193 -1.224 2.146 sum 4.361 -3.946 25.789 26.451 Atomic orbital electron populations 1.21613 0.94425 1.00621 1.00833 1.20413 0.96291 0.95031 0.93132 1.21781 0.99510 0.96481 1.01041 1.19631 0.95760 0.95453 0.93386 1.21146 1.31384 1.13226 0.88672 0.90386 1.25019 0.95829 0.96735 0.96036 1.69909 1.46198 1.40632 0.97817 0.86847 0.81290 0.84087 0.77426 1.20447 1.21586 1.19230 1.22149 0.96161 0.98118 0.89660 1.60466 1.63543 1.06296 1.00526 1.22621 0.97631 0.98895 0.90554 1.20491 0.80945 0.99498 0.88182 0.87698 1.86649 1.19048 1.32234 1.96463 1.19699 0.98168 0.96505 1.00003 1.20070 0.97872 1.01943 0.95730 1.25618 1.05817 0.99996 1.03327 1.84290 1.26619 1.26578 1.26570 1.25364 1.05976 1.01808 1.00779 0.93428 0.92189 0.94333 0.94215 0.91139 0.94483 0.97008 0.97200 0.92904 0.96013 0.91708 0.84029 0.94720 0.90871 0.78227 0.84048 0.81784 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 2 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 3 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 4 C 0.00 -0.11 3.11 -27.89 -0.09 -0.19 16 5 C -0.51 -14.03 8.20 -34.44 -0.28 -14.31 16 6 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.88 13.96 55.43 0.77 -27.11 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 14 N -0.68 -9.24 5.66 -113.77 -0.64 -9.88 16 15 C 0.03 0.37 5.30 -3.82 -0.02 0.35 16 16 C 0.17 1.72 3.47 -27.88 -0.10 1.62 16 17 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 18 O -0.54 -6.05 13.15 -35.23 -0.46 -6.51 16 19 C -0.13 -1.20 4.88 -106.25 -0.52 -1.72 16 20 C -0.13 -1.07 9.95 -41.21 -0.41 -1.48 16 21 C -0.21 -1.63 11.23 29.04 0.33 -1.31 16 22 S 0.10 0.74 23.34 -107.50 -2.51 -1.77 16 23 C -0.20 -1.70 10.45 29.04 0.30 -1.40 16 24 H 0.05 0.84 7.60 -51.93 -0.39 0.45 16 25 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 29 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 30 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.34 4.53 6.77 -39.29 -0.27 4.27 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.37 3.07 7.88 45.56 0.36 3.43 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.16 1.07 7.28 -52.49 -0.38 0.69 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -31.13 339.00 -8.56 -39.69 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.76 Total: 4.01 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -0.40 Total: -20.71 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.13 Total: -36.99 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.46 Total: -6.51 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.13 -8.56 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174419303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.796 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds