Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 119.99995 * 2 1 4 4 H 1.48499 * 109.47012 * 269.99923 * 3 2 1 5 5 H 1.48502 * 109.47107 * 29.99609 * 3 2 1 6 6 H 1.48496 * 109.47107 * 149.99764 * 3 2 1 7 7 C 1.38793 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00128 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00148 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00210 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47173 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00340 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00322 * 179.97438 * 13 11 10 15 15 C 1.52990 * 109.47335 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47138 * 179.97438 * 15 14 13 17 17 C 1.29524 * 119.82032 * 95.00101 * 16 15 14 18 18 C 1.51374 * 120.35983 * 180.02562 * 17 16 15 19 19 C 1.53034 * 108.76147 * 287.98647 * 18 17 16 20 20 C 1.52105 * 110.63054 * 85.53858 * 19 18 17 21 21 C 1.51844 * 113.79396 * 293.72517 * 20 19 18 22 22 C 1.51372 * 119.81915 * 274.97541 * 16 15 14 23 23 H 0.96999 * 119.99776 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47107 * 59.99897 * 10 9 7 25 25 H 1.09002 * 109.46607 * 300.00446 * 10 9 7 26 26 H 0.97006 * 120.00321 * 359.97438 * 13 11 10 27 27 H 1.09000 * 109.46668 * 59.99434 * 14 13 11 28 28 H 1.09003 * 109.46615 * 299.99618 * 14 13 11 29 29 H 1.09000 * 109.47643 * 60.00106 * 15 14 13 30 30 H 1.09003 * 109.47019 * 299.99446 * 15 14 13 31 31 H 1.08002 * 119.82307 * 359.97438 * 17 16 15 32 32 H 1.09002 * 109.61505 * 47.81365 * 18 17 16 33 33 H 1.09004 * 109.61368 * 168.16138 * 18 17 16 34 34 H 1.08992 * 109.22153 * 206.15156 * 19 18 17 35 35 H 1.09005 * 109.22088 * 325.49706 * 19 18 17 36 36 H 1.08995 * 108.61101 * 172.57446 * 20 19 18 37 37 H 1.09001 * 108.52813 * 54.81109 * 20 19 18 38 38 H 1.09003 * 109.22251 * 306.14457 * 21 20 19 39 39 H 1.09000 * 109.19059 * 186.77614 * 21 20 19 40 40 H 1.09001 * 109.61180 * 11.66011 * 22 16 15 41 41 H 1.09002 * 109.60990 * 132.00401 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2963 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 7.4908 -4.7357 -0.0005 15 6 7.7564 -6.2424 -0.0002 16 6 9.2429 -6.4904 -0.0013 17 6 9.8630 -6.6926 1.1178 18 6 11.3559 -6.9424 1.1309 19 6 11.6261 -8.3402 0.5697 20 6 11.7146 -8.3004 -0.9483 21 6 10.4050 -7.9437 -1.6291 22 6 10.0030 -6.5024 -1.3102 23 1 -0.4850 0.8401 0.0004 24 1 3.6434 -3.4317 -0.8896 25 1 3.6440 -3.4313 0.8904 26 1 5.4291 -5.2434 0.0000 27 1 7.9339 -4.2887 0.8894 28 1 7.9334 -4.2886 -0.8907 29 1 7.3132 -6.6898 -0.8898 30 1 7.3139 -6.6891 0.8902 31 1 9.3121 -6.6822 2.0466 32 1 11.8571 -6.1970 0.5133 33 1 11.7283 -6.8804 2.1535 34 1 12.5635 -8.7163 0.9793 35 1 10.8146 -9.0070 0.8614 36 1 12.0370 -9.2790 -1.3037 37 1 12.4668 -7.5644 -1.2322 38 1 9.6238 -8.6194 -1.2808 39 1 10.5202 -8.0539 -2.7074 40 1 9.3670 -6.1153 -2.1062 41 1 10.8953 -5.8828 -1.2208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186014190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = -54.484180 kcal Electronic energy + Delta-G solvation = -19151.899853 eV Core-core repulsion = 16156.904241 eV Total energy + Delta-G solvation = -2994.995612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.53409 -38.93964 -35.55936 -33.43329 -32.42991 -32.24816 -30.35482 -28.42863 -25.66061 -25.45861 -24.21436 -22.46250 -20.67095 -20.49600 -18.00438 -17.70613 -16.52055 -16.08188 -15.98674 -15.67950 -15.23427 -14.94643 -14.22686 -14.05475 -13.95181 -13.74625 -13.40391 -13.26221 -13.12168 -12.78918 -12.42442 -12.18552 -12.02865 -11.80559 -11.28850 -11.24592 -11.05034 -11.00765 -10.99383 -10.88058 -10.68677 -10.57407 -9.84896 -9.51811 -9.04344 -9.00533 -8.93002 -8.48820 -6.90722 -6.28107 -3.99721 1.94400 2.79796 3.00550 3.32870 3.36650 3.51722 3.68647 4.27395 4.34145 4.47794 4.52012 4.68185 4.71912 4.77144 4.86221 4.90381 5.02133 5.10938 5.12299 5.21625 5.34097 5.35415 5.38885 5.48827 5.51954 5.60613 5.72228 5.76509 5.77475 5.83288 5.84584 5.89624 5.94225 6.02855 6.03758 6.39588 6.56477 6.71444 7.63818 7.95020 8.42416 8.51949 9.18140 10.81099 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.051633 B = 0.002466 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.154062 B =11352.593210 C =11474.006415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.738 5.738 14 C 0.128 3.872 15 C -0.094 4.094 16 C -0.118 4.118 17 C -0.154 4.154 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.086 4.086 23 H 0.271 0.729 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.399 0.601 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.741 -19.143 -0.431 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.395 6.395 13 N -0.393 5.393 14 C 0.004 3.996 15 C -0.132 4.132 16 C -0.119 4.119 17 C -0.172 4.172 18 C -0.128 4.128 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.123 4.123 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.233 0.767 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.868 -17.474 -0.436 28.783 hybrid contribution -1.201 -0.709 0.029 1.395 sum 21.667 -18.183 -0.407 28.288 Atomic orbital electron populations 1.69942 1.05905 1.27749 1.48127 1.24720 0.94466 0.98986 0.93199 0.86727 0.81899 0.83248 0.79930 1.19214 1.19954 1.15913 1.22321 0.88285 0.97535 1.58712 0.89387 1.84793 1.09250 1.00165 1.97424 1.23279 0.94069 1.04317 1.05794 1.20278 0.90572 0.82326 0.75290 1.90698 1.58808 1.42234 1.47719 1.45995 1.07554 1.08044 1.77687 1.21224 0.81219 0.94669 1.02514 1.20857 0.93504 0.95656 1.03174 1.21101 0.94593 1.00808 0.95387 1.22426 0.96114 1.01207 0.97475 1.20801 0.93580 0.97123 1.01293 1.21315 1.01573 0.96817 0.95365 1.21206 0.97713 1.01431 0.95339 1.21253 0.97500 0.96276 0.99971 1.20799 0.99671 0.96953 0.94864 0.91955 0.88500 0.88476 0.76717 0.91614 0.91570 0.90596 0.90767 0.87425 0.91075 0.91582 0.91954 0.91902 0.92461 0.92326 0.91832 0.91831 0.91270 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 2 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 11 C 0.53 9.58 7.85 -10.99 -0.09 9.49 16 12 O -0.52 -11.50 15.86 5.56 0.09 -11.41 16 13 N -0.74 -9.52 5.56 -60.30 -0.33 -9.85 16 14 C 0.13 1.46 5.66 -4.04 -0.02 1.44 16 15 C -0.09 -0.78 5.41 -27.89 -0.15 -0.93 16 16 C -0.12 -0.96 4.41 -100.32 -0.44 -1.40 16 17 C -0.15 -1.22 8.93 -35.28 -0.31 -1.54 16 18 C -0.09 -0.62 5.60 -27.53 -0.15 -0.78 16 19 C -0.11 -0.69 5.70 -27.17 -0.15 -0.85 16 20 C -0.12 -0.71 5.29 -27.77 -0.15 -0.86 16 21 C -0.11 -0.73 5.67 -27.32 -0.15 -0.88 16 22 C -0.09 -0.64 5.47 -27.56 -0.15 -0.79 16 23 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 25 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 26 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 31 H 0.11 0.84 7.95 -52.49 -0.42 0.42 16 32 H 0.07 0.50 6.69 -51.93 -0.35 0.15 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.41 7.86 -51.93 -0.41 0.00 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 38 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 41 H 0.07 0.55 6.70 -51.93 -0.35 0.21 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -33.46 343.34 -9.25 -42.71 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.90 Total: -0.89 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.34 Total: -11.39 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.44 Total: -35.78 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.46 -9.25 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186014190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.774 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds