Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 119.99995 * 2 1 4 4 H 1.48499 * 109.47012 * 269.99923 * 3 2 1 5 5 H 1.48502 * 109.47107 * 29.99609 * 3 2 1 6 6 H 1.48496 * 109.47107 * 149.99764 * 3 2 1 7 7 C 1.38793 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00128 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00148 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00210 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47173 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00340 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00322 * 179.97438 * 13 11 10 15 15 C 1.52990 * 109.47335 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47138 * 179.97438 * 15 14 13 17 17 C 1.29524 * 119.82032 * 95.00101 * 16 15 14 18 18 C 1.51374 * 120.35983 * 180.02562 * 17 16 15 19 19 C 1.53034 * 108.76147 * 287.98647 * 18 17 16 20 20 C 1.52105 * 110.63054 * 85.53858 * 19 18 17 21 21 C 1.51844 * 113.79396 * 293.72517 * 20 19 18 22 22 C 1.51372 * 119.81915 * 274.97541 * 16 15 14 23 23 H 0.96999 * 119.99776 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47107 * 59.99897 * 10 9 7 25 25 H 1.09002 * 109.46607 * 300.00446 * 10 9 7 26 26 H 0.97006 * 120.00321 * 359.97438 * 13 11 10 27 27 H 1.09000 * 109.46668 * 59.99434 * 14 13 11 28 28 H 1.09003 * 109.46615 * 299.99618 * 14 13 11 29 29 H 1.09000 * 109.47643 * 60.00106 * 15 14 13 30 30 H 1.09003 * 109.47019 * 299.99446 * 15 14 13 31 31 H 1.08002 * 119.82307 * 359.97438 * 17 16 15 32 32 H 1.09002 * 109.61505 * 47.81365 * 18 17 16 33 33 H 1.09004 * 109.61368 * 168.16138 * 18 17 16 34 34 H 1.08992 * 109.22153 * 206.15156 * 19 18 17 35 35 H 1.09005 * 109.22088 * 325.49706 * 19 18 17 36 36 H 1.08995 * 108.61101 * 172.57446 * 20 19 18 37 37 H 1.09001 * 108.52813 * 54.81109 * 20 19 18 38 38 H 1.09003 * 109.22251 * 306.14457 * 21 20 19 39 39 H 1.09000 * 109.19059 * 186.77614 * 21 20 19 40 40 H 1.09001 * 109.61180 * 11.66011 * 22 16 15 41 41 H 1.09002 * 109.60990 * 132.00401 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2963 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 7.4908 -4.7357 -0.0005 15 6 7.7564 -6.2424 -0.0002 16 6 9.2429 -6.4904 -0.0013 17 6 9.8630 -6.6926 1.1178 18 6 11.3559 -6.9424 1.1309 19 6 11.6261 -8.3402 0.5697 20 6 11.7146 -8.3004 -0.9483 21 6 10.4050 -7.9437 -1.6291 22 6 10.0030 -6.5024 -1.3102 23 1 -0.4850 0.8401 0.0004 24 1 3.6434 -3.4317 -0.8896 25 1 3.6440 -3.4313 0.8904 26 1 5.4291 -5.2434 0.0000 27 1 7.9339 -4.2887 0.8894 28 1 7.9334 -4.2886 -0.8907 29 1 7.3132 -6.6898 -0.8898 30 1 7.3139 -6.6891 0.8902 31 1 9.3121 -6.6822 2.0466 32 1 11.8571 -6.1970 0.5133 33 1 11.7283 -6.8804 2.1535 34 1 12.5635 -8.7163 0.9793 35 1 10.8146 -9.0070 0.8614 36 1 12.0370 -9.2790 -1.3037 37 1 12.4668 -7.5644 -1.2322 38 1 9.6238 -8.6194 -1.2808 39 1 10.5202 -8.0539 -2.7074 40 1 9.3670 -6.1153 -2.1062 41 1 10.8953 -5.8828 -1.2208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186014190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -75.030038 kcal Electronic energy + Delta-G solvation = -19152.790788 eV Core-core repulsion = 16156.904241 eV Total energy + Delta-G solvation = -2995.886547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71766 -39.73798 -36.55876 -34.67712 -34.31667 -32.79276 -31.58752 -29.50048 -27.85568 -26.14549 -24.89632 -23.20407 -21.86913 -21.17320 -19.91168 -18.49714 -17.83293 -17.33975 -17.03614 -16.91018 -16.51809 -16.21370 -15.64623 -15.10963 -14.95645 -14.77474 -14.62445 -14.37878 -13.98357 -13.73643 -13.60954 -13.34974 -13.14149 -13.01556 -12.73158 -12.58730 -12.54936 -11.98991 -11.86643 -11.57345 -11.50127 -11.43020 -11.24067 -11.17376 -10.97775 -10.53938 -10.15601 -9.65535 -9.00203 -8.51792 -6.22720 0.98084 1.30567 1.31261 1.47478 1.55554 1.57304 2.23630 2.28727 2.72050 2.86338 3.70500 3.82468 3.93410 4.01407 4.11285 4.12403 4.22639 4.23169 4.32420 4.33804 4.46805 4.54926 4.63491 4.69413 4.81856 4.90692 4.96692 5.00458 5.08290 5.11730 5.28380 5.30221 5.33997 5.36446 5.40458 5.54217 5.70616 5.80825 6.10052 6.11249 6.46875 6.93405 7.18896 8.60513 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.051633 B = 0.002466 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.154062 B =11352.593210 C =11474.006415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.712 5.712 14 C 0.130 3.870 15 C -0.083 4.083 16 C -0.128 4.128 17 C -0.156 4.156 18 C -0.092 4.092 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.086 4.086 23 H 0.277 0.723 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.418 0.582 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.080 -20.385 -0.444 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.366 5.366 14 C 0.006 3.994 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.174 4.174 18 C -0.129 4.129 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.123 4.123 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.255 0.745 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.199 -18.778 -0.447 30.633 hybrid contribution -1.575 -0.495 0.043 1.651 sum 22.624 -19.273 -0.404 29.723 Atomic orbital electron populations 1.70016 1.07262 1.29019 1.49146 1.25572 0.95301 1.02279 0.92928 0.85861 0.80658 0.79602 0.80213 1.18696 1.18305 1.16131 1.22456 0.90180 0.96722 1.58217 0.91865 1.84736 1.06508 1.06347 1.97594 1.23272 0.95777 0.99539 1.07572 1.19999 0.89459 0.83416 0.75283 1.90689 1.59411 1.43945 1.50334 1.45773 1.08805 1.06827 1.75222 1.21311 0.79637 0.96964 1.01486 1.20777 0.93886 0.93026 1.04359 1.21158 0.94546 1.01370 0.95760 1.22590 0.96769 1.00616 0.97459 1.20834 0.92881 0.97556 1.01660 1.21298 1.01894 0.96159 0.95468 1.21211 0.97448 1.01859 0.95215 1.21236 0.97651 0.95451 1.00404 1.20811 0.99437 0.97594 0.94495 0.91360 0.86700 0.86713 0.74507 0.92816 0.92526 0.89347 0.89633 0.87342 0.91376 0.91080 0.91047 0.92260 0.91717 0.92292 0.92076 0.91260 0.91543 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.95 13.97 21.65 0.30 -55.64 16 2 C 0.04 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 4 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 7 C -0.53 -30.86 10.04 67.95 0.68 -30.17 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 10 C -0.11 -4.16 6.16 71.23 0.44 -3.72 16 11 C 0.53 18.49 7.85 87.66 0.69 19.18 16 12 O -0.57 -24.68 15.86 -3.02 -0.05 -24.73 16 13 N -0.71 -16.75 5.56 -463.08 -2.57 -19.33 16 14 C 0.13 2.75 5.66 86.38 0.49 3.24 16 15 C -0.08 -1.17 5.41 29.85 0.16 -1.01 16 16 C -0.13 -1.86 4.41 -14.76 -0.07 -1.92 16 17 C -0.16 -2.24 8.93 27.37 0.24 -1.99 16 18 C -0.09 -1.13 5.60 30.07 0.17 -0.96 16 19 C -0.11 -1.16 5.70 30.31 0.17 -0.99 16 20 C -0.12 -1.22 5.29 29.92 0.16 -1.07 16 21 C -0.11 -1.24 5.67 30.21 0.17 -1.07 16 22 C -0.09 -1.17 5.47 30.06 0.16 -1.00 16 23 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 25 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 26 H 0.42 6.86 8.47 -92.70 -0.79 6.08 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.05 7.96 -2.39 -0.02 1.03 16 31 H 0.11 1.51 7.95 -2.91 -0.02 1.49 16 32 H 0.07 0.88 6.69 -2.39 -0.02 0.87 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.67 7.86 -2.38 -0.02 0.65 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.60 7.90 -2.39 -0.02 0.58 16 38 H 0.06 0.72 7.86 -2.39 -0.02 0.70 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.92 8.03 -2.39 -0.02 0.90 16 41 H 0.07 0.99 6.70 -2.39 -0.02 0.97 16 Total: -1.00 -71.96 343.34 2.66 -69.30 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.18 Total: 11.74 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.94 Total: -18.40 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.27 Total: -74.97 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -71.96 2.66 -69.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186014190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.728 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds