Wall clock time and date at job start Tue Mar 31 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46863 * 273.00992 * 3 2 1 5 5 H 1.48497 * 109.46950 * 33.01057 * 3 2 1 6 6 H 1.48502 * 109.46842 * 153.01151 * 3 2 1 7 7 C 1.37882 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99770 * 348.16438 * 7 2 1 9 9 C 1.50701 * 119.99696 * 168.16222 * 7 2 1 10 10 H 1.09000 * 109.47370 * 354.63677 * 9 7 2 11 11 O 1.42903 * 109.47043 * 234.63394 * 9 7 2 12 12 C 1.35894 * 117.00254 * 83.47555 * 11 9 7 13 13 C 1.38752 * 120.05246 * 1.37157 * 12 11 9 14 14 C 1.38128 * 119.94343 * 180.02562 * 13 12 11 15 15 C 1.38282 * 120.05709 * 359.97267 * 14 13 12 16 16 C 1.38251 * 120.10804 * 0.04959 * 15 14 13 17 17 C 1.50701 * 119.96820 * 179.97438 * 16 15 14 18 18 N 1.46906 * 109.47054 * 90.00332 * 17 16 15 19 19 C 1.38162 * 120.05747 * 359.67783 * 16 15 14 20 20 C 1.50706 * 109.46750 * 114.63605 * 9 7 2 21 21 C 1.38230 * 120.00004 * 262.18526 * 20 9 7 22 22 C 1.38236 * 120.00362 * 179.97438 * 21 20 9 23 23 C 1.38233 * 119.99453 * 359.97438 * 22 21 20 24 24 C 1.38238 * 120.00402 * 359.97438 * 23 22 21 25 25 C 1.38230 * 119.99850 * 0.06783 * 24 23 22 26 26 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.02987 * 359.97438 * 13 12 11 28 28 H 1.07999 * 119.97375 * 180.02562 * 14 13 12 29 29 H 1.08000 * 119.94933 * 180.02562 * 15 14 13 30 30 H 1.09004 * 109.46939 * 209.99959 * 17 16 15 31 31 H 1.08996 * 109.47538 * 330.00262 * 17 16 15 32 32 H 1.00904 * 110.99941 * 56.04254 * 18 17 16 33 33 H 1.00894 * 110.99963 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.02858 * 180.29633 * 19 16 15 35 35 H 1.08001 * 119.99789 * 359.97438 * 21 20 9 36 36 H 1.07997 * 120.00134 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.99741 * 179.72459 * 23 22 21 38 38 H 1.07997 * 120.00123 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.00107 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4330 2.0832 -1.3982 5 1 1.4799 2.6334 0.7627 6 1 3.5771 1.4226 0.6354 7 6 2.0045 -1.1941 0.0005 8 1 1.4817 -2.1193 0.1928 9 6 3.4875 -1.2080 -0.2672 10 1 3.8185 -0.2036 -0.5312 11 8 3.7683 -2.1012 -1.3468 12 6 3.6227 -1.6119 -2.6062 13 6 3.2454 -0.2907 -2.7990 14 6 3.0975 0.2041 -4.0801 15 6 3.3257 -0.6159 -5.1700 16 6 3.7013 -1.9328 -4.9804 17 6 3.9486 -2.8238 -6.1704 18 7 5.3612 -2.7345 -6.5638 19 6 3.8560 -2.4310 -3.7010 20 6 4.2167 -1.6687 0.9686 21 6 4.7710 -0.7409 1.8303 22 6 5.4394 -1.1634 2.9642 23 6 5.5530 -2.5138 3.2365 24 6 4.9978 -3.4418 2.3753 25 6 4.3301 -3.0192 1.2411 26 1 -0.4851 0.8400 -0.0004 27 1 3.0666 0.3501 -1.9482 28 1 2.8043 1.2326 -4.2308 29 1 3.2100 -0.2270 -6.1709 30 1 3.7089 -3.8544 -5.9086 31 1 3.3193 -2.5040 -7.0008 32 1 5.9672 -2.9640 -5.7904 33 1 5.5525 -3.3231 -7.3606 34 1 4.1541 -3.4585 -3.5535 35 1 4.6819 0.3143 1.6177 36 1 5.8728 -0.4384 3.6372 37 1 6.0791 -2.8441 4.1200 38 1 5.0869 -4.4969 2.5879 39 1 3.8967 -3.7442 0.5681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236273350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:39 Heat of formation + Delta-G solvation = 15.532039 kcal Electronic energy + Delta-G solvation = -21657.984776 eV Core-core repulsion = 18530.581343 eV Total energy + Delta-G solvation = -3127.403432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.60895 -38.54041 -36.96175 -34.32045 -33.13859 -31.44993 -30.32706 -30.18198 -29.05926 -27.39951 -24.71953 -23.31173 -22.17472 -21.68205 -21.14529 -19.66582 -17.63177 -17.06421 -16.45464 -15.84815 -15.42578 -15.24162 -14.86246 -14.54115 -14.19971 -14.04921 -13.77037 -13.38954 -12.96947 -12.89665 -12.83886 -12.73467 -12.22476 -12.10408 -11.58623 -11.44289 -11.19567 -11.12206 -10.74179 -10.58163 -10.28572 -9.97897 -9.83945 -9.41430 -8.88542 -8.77237 -8.34431 -8.31133 -8.02348 -7.35169 -6.42947 -4.44388 1.84696 1.96319 2.00052 2.11970 3.00293 3.06884 3.13195 4.05630 4.07649 4.29931 4.46312 4.82551 4.95107 5.07249 5.28020 5.42932 5.45946 5.51249 5.59167 5.66377 5.74962 5.86022 5.90910 5.99170 6.10315 6.15853 6.24492 6.27238 6.55717 6.58583 6.66176 6.91922 7.01307 7.02778 7.04567 7.12617 7.13422 7.20944 7.29149 7.39317 7.47583 7.59985 8.09339 8.37708 8.72614 9.17701 10.68641 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014344 B = 0.006274 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.516382 B = 4461.939614 C = 5748.096848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.089 3.911 3 Si 0.848 3.152 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.086 0.914 9 C 0.209 3.791 10 H 0.045 0.955 11 O -0.321 6.321 12 C 0.171 3.829 13 C -0.200 4.200 14 C -0.084 4.084 15 C -0.155 4.155 16 C -0.057 4.057 17 C 0.106 3.894 18 N -0.846 5.846 19 C -0.166 4.166 20 C -0.035 4.035 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.102 4.102 26 H 0.271 0.729 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.343 0.657 33 H 0.338 0.662 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 -2.953 -4.743 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.118 4.118 3 Si 0.675 3.325 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.567 4.567 8 H 0.104 0.896 9 C 0.155 3.845 10 H 0.063 0.937 11 O -0.234 6.234 12 C 0.124 3.876 13 C -0.219 4.219 14 C -0.102 4.102 15 C -0.173 4.173 16 C -0.058 4.058 17 C -0.024 4.024 18 N -0.376 5.376 19 C -0.185 4.185 20 C -0.035 4.035 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.120 4.120 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.334 -2.273 -4.796 10.738 hybrid contribution 0.009 0.212 0.497 0.540 sum 9.343 -2.061 -4.300 10.489 Atomic orbital electron populations 1.69893 1.06254 1.27678 1.46219 1.25024 0.94722 0.98732 0.93297 0.87471 0.81304 0.84461 0.79306 1.18892 1.20356 1.17746 1.21150 0.89313 0.96107 1.50139 0.89593 1.19385 0.95487 0.88840 0.80804 0.93745 1.86043 1.82198 1.43346 1.11814 1.18831 0.92087 0.91405 0.85304 1.21565 1.05823 0.96114 0.98410 1.20868 0.97983 0.99237 0.92156 1.20652 1.05049 0.93501 0.98140 1.19328 0.99132 0.94503 0.92834 1.20645 0.89902 0.96381 0.95458 1.58713 1.04551 1.62914 1.11411 1.20168 1.08512 0.99672 0.90168 1.19998 0.93215 0.93550 0.96777 1.21060 0.98632 0.99547 0.95404 1.20943 1.00164 0.95682 0.97240 1.20927 1.02087 0.93365 0.99773 1.21056 0.99174 0.98886 0.95173 1.20954 0.98483 0.95716 0.96830 0.91870 0.85357 0.86719 0.86769 0.94763 0.90388 0.84427 0.84971 0.86318 0.86338 0.86828 0.87035 0.86855 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.96 55.43 0.77 -24.24 16 2 C 0.09 2.42 5.30 -17.82 -0.09 2.33 16 3 Si 0.85 19.63 24.83 -169.99 -4.22 15.41 16 4 H -0.26 -5.86 6.56 56.52 0.37 -5.49 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.25 -5.44 4.69 56.52 0.27 -5.17 16 7 C -0.53 -14.44 8.70 -34.44 -0.30 -14.73 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.21 4.96 1.84 -29.03 -0.05 4.90 16 10 H 0.04 1.05 3.48 -51.93 -0.18 0.87 16 11 O -0.32 -7.41 9.04 -19.41 -0.18 -7.58 16 12 C 0.17 3.71 6.57 -39.22 -0.26 3.45 16 13 C -0.20 -4.38 8.79 -39.43 -0.35 -4.73 16 14 C -0.08 -1.59 10.04 -39.61 -0.40 -1.99 16 15 C -0.15 -2.61 9.70 -39.56 -0.38 -2.99 16 16 C -0.06 -0.94 5.39 -104.64 -0.56 -1.50 16 17 C 0.11 1.34 6.91 -4.97 -0.03 1.30 16 18 N -0.85 -9.48 9.61 -11.40 -0.11 -9.59 16 19 C -0.17 -3.06 9.64 -39.44 -0.38 -3.44 16 20 C -0.03 -0.76 4.97 -104.62 -0.52 -1.28 16 21 C -0.13 -2.55 9.67 -39.58 -0.38 -2.93 16 22 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.14 -2.27 10.05 -39.58 -0.40 -2.66 16 24 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 25 C -0.10 -2.02 9.36 -39.58 -0.37 -2.39 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.13 2.98 1.98 -52.48 -0.10 2.87 16 28 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.03 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.34 3.77 8.99 -39.29 -0.35 3.42 16 33 H 0.34 2.87 9.08 -39.30 -0.36 2.51 16 34 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.12 2.32 5.97 -52.49 -0.31 2.01 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.12 2.41 7.71 -52.49 -0.40 2.01 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -29.58 320.91 -8.99 -38.57 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.81 Total: 14.20 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -5.28 Total: -31.61 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.66 Total: -33.83 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.18 Total: -7.58 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.22 Total: 15.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.58 -8.99 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236273350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.098 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds