Wall clock time and date at job start Tue Mar 31 2020 05:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99635 * 2 1 4 4 H 1.48497 * 109.47151 * 239.99795 * 3 2 1 5 5 H 1.48493 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46518 * 119.99980 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99905 * 189.43200 * 7 2 1 9 9 C 1.50700 * 120.00248 * 9.43234 * 7 2 1 10 10 H 1.08998 * 109.47543 * 185.49793 * 9 7 2 11 11 O 1.42901 * 109.46782 * 305.50098 * 9 7 2 12 12 C 1.35899 * 116.99967 * 279.31948 * 11 9 7 13 13 C 1.38751 * 120.05251 * 4.41744 * 12 11 9 14 14 C 1.38130 * 119.93882 * 180.02562 * 13 12 11 15 15 C 1.38285 * 120.05870 * 0.02562 * 14 13 12 16 16 C 1.38245 * 120.10955 * 359.95912 * 15 14 13 17 17 C 1.50699 * 119.97011 * 180.02562 * 16 15 14 18 18 N 1.46901 * 109.47622 * 89.99904 * 17 16 15 19 19 C 1.38169 * 120.05742 * 0.27422 * 16 15 14 20 20 C 1.50709 * 109.47078 * 65.49859 * 9 7 2 21 21 C 1.38230 * 119.99701 * 271.21497 * 20 9 7 22 22 C 1.38244 * 119.99540 * 179.81063 * 21 20 9 23 23 C 1.38230 * 119.99746 * 0.39781 * 22 21 20 24 24 C 1.38237 * 120.00463 * 359.85343 * 23 22 21 25 25 C 1.38228 * 119.99625 * 91.48851 * 20 9 7 26 26 H 0.97001 * 120.00248 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.03342 * 0.03471 * 13 12 11 28 28 H 1.08004 * 119.96700 * 179.97438 * 14 13 12 29 29 H 1.07999 * 119.94196 * 179.97438 * 15 14 13 30 30 H 1.09003 * 109.46926 * 209.99870 * 17 16 15 31 31 H 1.08998 * 109.47005 * 329.99477 * 17 16 15 32 32 H 1.00901 * 110.99669 * 56.03998 * 18 17 16 33 33 H 1.00900 * 111.00004 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.02754 * 179.74830 * 19 16 15 35 35 H 1.07999 * 120.00569 * 359.97438 * 21 20 9 36 36 H 1.08000 * 119.99647 * 180.23080 * 22 21 20 37 37 H 1.08004 * 120.00048 * 179.83880 * 23 22 21 38 38 H 1.07991 * 120.00004 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.00584 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0736 -1.2003 0.1527 9 6 1.2664 -2.4902 -0.2150 10 1 1.9544 -3.3258 -0.0860 11 8 0.2045 -2.5964 0.7353 12 6 0.5346 -3.0154 1.9852 13 6 1.8646 -3.2300 2.3175 14 6 2.1975 -3.6563 3.5885 15 6 1.2066 -3.8696 4.5292 16 6 -0.1191 -3.6562 4.2006 17 6 -1.1964 -3.8891 5.2284 18 7 -1.4368 -2.6476 5.9759 19 6 -0.4578 -3.2344 2.9292 20 6 0.6970 -2.5192 -1.6101 21 6 -0.5616 -2.0022 -1.8536 22 6 -1.0823 -2.0253 -3.1340 23 6 -0.3477 -2.5727 -4.1691 24 6 0.9089 -3.0944 -3.9245 25 6 1.4311 -3.0679 -2.6449 26 1 -0.4850 0.8400 -0.0004 27 1 2.6388 -3.0638 1.5831 28 1 3.2325 -3.8239 3.8474 29 1 1.4690 -4.2033 5.5223 30 1 -2.1151 -4.1960 4.7286 31 1 -0.8784 -4.6720 5.9170 32 1 -1.6703 -1.8895 5.3523 33 1 -2.1560 -2.7778 6.6716 34 1 -1.4940 -3.0717 2.6719 35 1 -1.1371 -1.5779 -1.0442 36 1 -2.0642 -1.6180 -3.3250 37 1 -0.7555 -2.5931 -5.1690 38 1 1.4825 -3.5225 -4.7331 39 1 2.4128 -3.4754 -2.4538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236273415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:42 Heat of formation + Delta-G solvation = 14.026905 kcal Electronic energy + Delta-G solvation = -21770.807141 eV Core-core repulsion = 18643.338441 eV Total energy + Delta-G solvation = -3127.468700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.29632 -38.23823 -36.66364 -34.18762 -32.94785 -30.88147 -29.99633 -29.91136 -28.79207 -26.98549 -24.56134 -23.31750 -21.85542 -21.42691 -20.85301 -19.68653 -17.37627 -16.24231 -16.10301 -15.62585 -15.17004 -15.01096 -14.80094 -14.33549 -13.91384 -13.87328 -13.60885 -13.35530 -12.67127 -12.53169 -12.46468 -12.21012 -11.84456 -11.75306 -11.54846 -11.10378 -11.00305 -10.76597 -10.61753 -10.46747 -10.25358 -10.14270 -9.45479 -9.30998 -8.69901 -8.63837 -8.14963 -7.98622 -7.66485 -7.09626 -6.17891 -4.37644 2.01582 2.27987 2.32643 2.39867 3.22809 3.27176 3.30277 4.26581 4.41258 4.52915 4.81887 4.96909 5.12130 5.21286 5.41908 5.66065 5.67389 5.75536 5.78106 5.86043 5.90926 6.10674 6.17139 6.24073 6.38453 6.44425 6.52468 6.66442 6.77401 6.90116 7.06402 7.10911 7.19043 7.27264 7.28182 7.33835 7.47705 7.53122 7.63369 7.69074 7.81638 7.86576 8.03789 8.49570 8.90319 9.35577 10.78902 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.005788 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.140088 B = 4836.663141 C = 5578.569558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.088 3.912 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.241 3.759 10 H 0.032 0.968 11 O -0.286 6.286 12 C 0.181 3.819 13 C -0.201 4.201 14 C -0.089 4.089 15 C -0.166 4.166 16 C -0.058 4.058 17 C 0.107 3.893 18 N -0.846 5.846 19 C -0.170 4.170 20 C -0.035 4.035 21 C -0.070 4.070 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.126 4.126 26 H 0.264 0.736 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.346 0.654 33 H 0.336 0.664 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -6.242 2.730 7.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.121 4.121 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.084 0.916 9 C 0.187 3.813 10 H 0.050 0.950 11 O -0.198 6.198 12 C 0.132 3.868 13 C -0.220 4.220 14 C -0.107 4.107 15 C -0.185 4.185 16 C -0.059 4.059 17 C -0.023 4.023 18 N -0.376 5.376 19 C -0.190 4.190 20 C -0.035 4.035 21 C -0.088 4.088 22 C -0.160 4.160 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.730 -6.139 2.861 6.990 hybrid contribution -0.139 1.174 -0.575 1.315 sum -1.868 -4.964 2.287 5.776 Atomic orbital electron populations 1.69946 1.05920 1.26889 1.44392 1.24947 0.94762 0.99229 0.93119 0.86684 0.79976 0.82773 0.78896 1.19957 1.20990 1.19929 1.21256 0.94422 0.90545 1.52887 0.91577 1.18923 0.84117 0.95911 0.82344 0.94979 1.86213 1.38824 1.78139 1.16603 1.18948 0.92169 0.89118 0.86560 1.21418 0.96380 1.06068 0.98125 1.20842 0.98422 0.98217 0.93226 1.20565 0.92225 1.06809 0.98945 1.19293 0.94204 0.99373 0.92999 1.20627 0.95427 0.92297 0.93940 1.58721 1.52087 1.07186 1.19602 1.20173 0.98461 1.07768 0.92568 1.19930 0.93645 0.94600 0.95360 1.21571 0.95706 0.94787 0.96758 1.21148 0.99546 1.01355 0.93926 1.20860 0.95633 1.01868 0.98145 1.20785 0.96204 1.02430 0.96258 1.20766 0.99459 1.01389 0.92854 0.92555 0.85032 0.87072 0.87311 0.95049 0.90726 0.84149 0.85187 0.86655 0.83079 0.87627 0.87830 0.87532 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.04 9.43 55.43 0.52 -21.52 16 2 C 0.09 2.29 5.21 -17.82 -0.09 2.20 16 3 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.23 7.58 -34.44 -0.26 -14.49 16 8 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 9 C 0.24 5.75 2.12 -29.03 -0.06 5.69 16 10 H 0.03 0.73 6.48 -51.93 -0.34 0.40 16 11 O -0.29 -6.95 7.69 -19.42 -0.15 -7.10 16 12 C 0.18 4.00 6.56 -39.22 -0.26 3.74 16 13 C -0.20 -4.14 8.62 -39.43 -0.34 -4.48 16 14 C -0.09 -1.59 10.04 -39.60 -0.40 -1.99 16 15 C -0.17 -2.83 9.70 -39.56 -0.38 -3.21 16 16 C -0.06 -0.99 5.39 -104.64 -0.56 -1.56 16 17 C 0.11 1.45 6.91 -4.98 -0.03 1.42 16 18 N -0.85 -10.91 9.61 -11.41 -0.11 -11.02 16 19 C -0.17 -3.34 9.64 -39.43 -0.38 -3.72 16 20 C -0.03 -0.80 4.84 -104.62 -0.51 -1.30 16 21 C -0.07 -1.59 8.12 -39.58 -0.32 -1.91 16 22 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 23 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 24 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 25 C -0.13 -2.57 9.70 -39.58 -0.38 -2.96 16 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.13 2.77 5.61 -52.49 -0.29 2.47 16 28 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.35 4.64 8.99 -39.29 -0.35 4.29 16 33 H 0.34 3.35 9.08 -39.29 -0.36 2.99 16 34 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.15 3.74 5.86 -52.49 -0.31 3.43 16 36 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -27.68 326.88 -10.00 -37.68 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -4.99 Total: 13.22 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -5.18 Total: -31.76 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.41 Total: -32.53 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.15 Total: -7.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.68 -10.00 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236273415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.710 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds