Wall clock time and date at job start Tue Mar 31 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48506 * 109.47111 * 270.00095 * 3 2 1 5 5 H 1.48498 * 109.47205 * 30.00033 * 3 2 1 6 6 H 1.48504 * 109.47147 * 150.00360 * 3 2 1 7 7 C 1.37881 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.45912 * 300.07028 * 9 7 2 11 11 C 1.53192 * 109.31068 * 178.61112 * 10 9 7 12 12 N 1.46926 * 108.77400 * 54.63812 * 11 10 9 13 13 C 1.34777 * 120.62924 * 126.40757 * 12 11 10 14 14 O 1.21283 * 119.99731 * 174.89926 * 13 12 11 15 15 C 1.50697 * 120.00352 * 354.90145 * 13 12 11 16 16 H 1.09001 * 109.39004 * 325.03161 * 15 13 12 17 17 C 1.52576 * 109.39212 * 205.22578 * 15 13 12 18 18 C 1.52583 * 110.72726 * 169.17520 * 17 15 13 19 19 C 1.53093 * 109.95535 * 70.67722 * 18 17 15 20 20 S 1.81749 * 108.84323 * 296.97555 * 19 18 17 21 21 C 1.53098 * 109.38937 * 84.73313 * 15 13 12 22 22 C 1.46924 * 118.74031 * 306.39002 * 12 11 10 23 23 C 1.53036 * 109.46057 * 180.02562 * 9 7 2 24 24 H 0.97000 * 119.99570 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46049 * 60.02976 * 9 7 2 26 26 H 1.09000 * 109.49891 * 298.56446 * 10 9 7 27 27 H 1.09001 * 109.49580 * 58.65934 * 10 9 7 28 28 H 1.08995 * 109.58736 * 294.85085 * 11 10 9 29 29 H 1.08996 * 109.58297 * 174.41992 * 11 10 9 30 30 H 1.08995 * 109.23146 * 289.50051 * 17 15 13 31 31 H 1.09004 * 109.22345 * 48.90048 * 17 15 13 32 32 H 1.08997 * 109.39194 * 190.83054 * 18 17 15 33 33 H 1.09001 * 109.39114 * 310.52875 * 18 17 15 34 34 H 1.09001 * 109.57858 * 56.78348 * 19 18 17 35 35 H 1.08998 * 109.57651 * 177.03908 * 19 18 17 36 36 H 1.09009 * 109.57814 * 302.98105 * 21 15 13 37 37 H 1.08997 * 109.58023 * 63.36896 * 21 15 13 38 38 H 1.08997 * 109.58534 * 293.82095 * 22 12 11 39 39 H 1.08996 * 109.58841 * 173.39478 * 22 12 11 40 40 H 1.08995 * 109.49719 * 301.33934 * 23 9 7 41 41 H 1.09001 * 109.49938 * 61.40409 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.3704 -2.5795 1.2486 11 6 -0.4200 -3.8916 1.2277 12 7 0.5226 -5.0091 1.0811 13 6 0.5120 -6.0355 1.9545 14 8 1.2303 -6.9953 1.7710 15 6 -0.3924 -5.9906 3.1591 16 1 -0.4666 -4.9640 3.5179 17 6 0.1877 -6.8718 4.2613 18 6 -0.5491 -6.6449 5.5781 19 6 -1.9616 -7.2293 5.4938 20 16 -2.8876 -6.3431 4.2053 21 6 -1.7851 -6.4920 2.7680 22 6 1.4766 -4.9867 -0.0360 23 6 2.2457 -3.6622 -0.0005 24 1 -0.4849 0.8401 0.0004 25 1 0.6244 -2.5568 -0.8906 26 1 0.9982 -2.5470 2.1390 27 1 -0.3221 -1.7378 1.2602 28 1 -1.1144 -3.8866 0.3876 29 1 -0.9728 -4.0000 2.1608 30 1 0.0918 -7.9183 3.9721 31 1 1.2425 -6.6316 4.3950 32 1 -0.0036 -7.1317 6.3865 33 1 -0.6113 -5.5752 5.7783 34 1 -1.9044 -8.2877 5.2399 35 1 -2.4637 -7.1107 6.4540 36 1 -2.1728 -5.8896 1.9464 37 1 -1.7245 -7.5360 2.4609 38 1 0.9369 -5.0710 -0.9792 39 1 2.1751 -5.8175 0.0632 40 1 2.8882 -3.5913 -0.8781 41 1 2.8559 -3.6191 0.9016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:28 Heat of formation + Delta-G solvation = -58.359995 kcal Electronic energy + Delta-G solvation = -21039.254805 eV Core-core repulsion = 18044.091125 eV Total energy + Delta-G solvation = -2995.163680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10519 -37.24259 -36.13547 -33.59613 -32.22806 -30.91086 -30.03482 -27.41914 -26.37243 -24.28189 -22.73297 -22.40012 -21.18142 -19.58382 -18.44288 -17.29902 -16.54917 -16.12259 -15.69309 -15.20624 -14.77761 -14.59384 -14.27360 -13.64897 -13.59034 -13.28112 -13.15783 -13.03353 -12.71777 -12.59003 -12.18910 -11.75517 -11.58714 -11.52343 -11.34773 -11.10913 -10.98396 -10.94090 -10.65516 -10.41330 -10.13659 -9.97918 -9.68531 -9.32857 -9.21539 -8.94417 -8.41195 -8.06423 -7.82565 -6.06109 -4.12389 1.58543 2.28657 2.89380 3.26422 3.33774 3.36905 3.41583 4.38540 4.48654 4.55538 4.59246 4.73857 4.87848 5.02608 5.22101 5.24697 5.30511 5.49133 5.51234 5.55659 5.66036 5.77827 5.78986 5.90986 5.95170 6.03624 6.10241 6.13151 6.26603 6.40239 6.61109 6.83770 6.98896 7.09274 7.23346 7.62854 7.85877 7.87809 8.00363 8.36649 8.46967 8.90971 9.53064 10.99446 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.004364 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.131279 B = 6414.226254 C = 6962.488310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.098 3.902 12 N -0.596 5.596 13 C 0.518 3.482 14 O -0.557 6.557 15 C -0.109 4.109 16 H 0.108 0.892 17 C -0.109 4.109 18 C -0.122 4.122 19 C -0.084 4.084 20 S -0.257 6.257 21 C -0.070 4.070 22 C 0.111 3.889 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -12.073 8.588 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.024 4.024 12 N -0.328 5.328 13 C 0.304 3.696 14 O -0.437 6.437 15 C -0.132 4.132 16 H 0.126 0.874 17 C -0.147 4.147 18 C -0.161 4.161 19 C -0.232 4.232 20 S -0.029 6.029 21 C -0.218 4.218 22 C -0.011 4.011 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.188 -11.935 8.559 15.576 hybrid contribution 1.533 0.507 -0.154 1.622 sum -3.656 -11.428 8.405 14.649 Atomic orbital electron populations 1.69828 1.05849 1.26523 1.50826 1.24951 0.94863 0.99048 0.95019 0.86621 0.79908 0.83518 0.78123 1.20701 1.21217 1.19983 1.21198 0.92945 0.90557 1.50424 0.92714 1.18635 0.92637 0.91741 0.93988 1.22027 1.00056 0.94589 0.99591 1.22152 0.91697 0.87620 1.00909 1.48275 1.35795 1.21009 1.27712 1.20364 0.83180 0.82377 0.83702 1.90636 1.43755 1.33249 1.76010 1.21556 0.93773 1.02886 0.94958 0.87403 1.21335 1.00508 1.00144 0.92705 1.21751 0.93919 1.02424 0.97967 1.23487 0.98318 1.01621 0.99807 1.86945 1.32198 1.75060 1.08730 1.23390 0.94895 1.05347 0.98181 1.21716 0.91727 0.99686 0.87956 1.22010 0.98917 0.94203 1.00999 0.92930 0.95450 0.94215 0.87659 0.91776 0.91078 0.90946 0.90453 0.90470 0.90300 0.89843 0.87771 0.87133 0.89268 0.92158 0.90418 0.92105 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 11.31 55.43 0.63 -23.50 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.48 8.56 -34.44 -0.29 -13.78 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 10 C -0.12 -2.66 5.15 -26.61 -0.14 -2.80 16 11 C 0.10 1.69 5.80 -3.71 -0.02 1.67 16 12 N -0.60 -10.35 2.97 -172.78 -0.51 -10.86 16 13 C 0.52 8.62 6.75 -10.99 -0.07 8.54 16 14 O -0.56 -10.74 15.70 5.55 0.09 -10.65 16 15 C -0.11 -1.43 1.52 -91.94 -0.14 -1.57 16 16 H 0.11 1.43 6.40 -51.93 -0.33 1.10 16 17 C -0.11 -1.27 4.31 -27.16 -0.12 -1.39 16 18 C -0.12 -1.12 5.75 -26.90 -0.15 -1.27 16 19 C -0.08 -0.75 6.45 37.21 0.24 -0.51 16 20 S -0.26 -2.93 22.33 -107.50 -2.40 -5.33 16 21 C -0.07 -0.83 5.50 37.21 0.20 -0.63 16 22 C 0.11 2.00 6.42 -3.71 -0.02 1.97 16 23 C -0.12 -2.47 5.30 -26.61 -0.14 -2.62 16 24 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.07 5.10 -51.93 -0.27 0.81 16 30 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.34 7.36 -51.92 -0.38 0.95 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -28.23 325.67 -9.94 -38.17 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.68 Total: 1.52 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.94 Total: -9.87 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.11 Total: -34.36 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.40 Total: -5.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.23 -9.94 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.186 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds