Wall clock time and date at job start Tue Mar 31 2020 05:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48493 * 109.46988 * 270.00286 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00236 * 3 2 1 6 6 H 1.48498 * 109.46684 * 149.99958 * 3 2 1 7 7 C 1.37880 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00083 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46220 * 184.99760 * 10 9 7 12 12 C 1.53192 * 109.31606 * 178.61215 * 11 10 9 13 13 N 1.46927 * 108.77231 * 54.63735 * 12 11 10 14 14 C 1.34778 * 120.63087 * 126.37055 * 13 12 11 15 15 O 1.21281 * 120.00085 * 185.38877 * 14 13 12 16 16 C 1.50700 * 120.00132 * 5.38260 * 14 13 12 17 17 H 1.09005 * 110.38649 * 22.95770 * 16 14 13 18 18 C 1.53704 * 110.34139 * 145.18100 * 16 14 13 19 19 C 1.52943 * 112.49088 * 116.05009 * 18 16 14 20 20 C 1.55155 * 108.95646 * 30.10036 * 19 18 16 21 21 S 1.83395 * 110.34292 * 260.73085 * 16 14 13 22 22 C 1.46928 * 118.73968 * 306.64013 * 13 12 11 23 23 C 1.52766 * 109.00469 * 53.31442 * 22 13 12 24 24 H 0.96998 * 119.99736 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47197 * 60.00007 * 9 7 2 26 26 H 1.09000 * 109.47330 * 299.99591 * 9 7 2 27 27 H 1.09004 * 109.46312 * 304.97416 * 10 9 7 28 28 H 1.09004 * 109.49827 * 58.66516 * 11 10 9 29 29 H 1.08993 * 109.50216 * 298.56740 * 11 10 9 30 30 H 1.08996 * 109.59121 * 294.85184 * 12 11 10 31 31 H 1.09000 * 109.58816 * 174.42351 * 12 11 10 32 32 H 1.09001 * 108.89303 * 236.84226 * 18 16 14 33 33 H 1.09000 * 108.88811 * 355.26053 * 18 16 14 34 34 H 1.08995 * 109.60923 * 150.03240 * 19 18 16 35 35 H 1.08997 * 109.60416 * 270.17501 * 19 18 16 36 36 H 1.09000 * 111.12842 * 76.47576 * 20 19 18 37 37 H 1.09000 * 111.13307 * 200.64944 * 20 19 18 38 38 H 1.09004 * 109.58522 * 173.14124 * 22 13 12 39 39 H 1.08995 * 109.58886 * 293.57369 * 22 13 12 40 40 H 1.08996 * 109.56433 * 185.55587 * 23 22 13 41 41 H 1.08997 * 109.38835 * 65.51357 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5466 -2.6382 0.1262 12 6 6.0507 -4.0844 0.1606 13 7 5.5425 -4.7906 -1.0234 14 6 6.3859 -5.4401 -1.8501 15 8 5.9683 -5.9359 -2.8751 16 6 7.8477 -5.5503 -1.5008 17 1 7.9912 -5.4347 -0.4264 18 6 8.4094 -6.9010 -1.9725 19 6 9.4873 -6.7436 -3.0461 20 6 10.2273 -5.3981 -2.8239 21 16 8.8178 -4.2892 -2.4128 22 6 4.0982 -4.7701 -1.2924 23 6 3.6155 -3.3208 -1.3075 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.5868 -3.1756 0.8418 28 1 5.8361 -2.1302 1.0462 29 1 5.9831 -2.1211 -0.7282 30 1 5.6881 -4.5765 1.0631 31 1 7.1406 -4.0919 0.1507 32 1 8.8373 -7.4235 -1.1169 33 1 7.5938 -7.5005 -2.3767 34 1 10.1973 -7.5675 -2.9751 35 1 9.0241 -6.7475 -4.0327 36 1 10.9281 -5.4678 -1.9920 37 1 10.7314 -5.0719 -3.7336 38 1 3.9004 -5.2298 -2.2608 39 1 3.5732 -5.3191 -0.5108 40 1 2.5304 -3.2986 -1.4079 41 1 4.0696 -2.7969 -2.1485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:37 Heat of formation + Delta-G solvation = -51.196844 kcal Electronic energy + Delta-G solvation = -20590.459150 eV Core-core repulsion = 17595.606087 eV Total energy + Delta-G solvation = -2994.853062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20030 -37.64573 -35.86192 -34.13620 -32.18367 -31.28714 -30.02175 -28.50744 -25.85877 -24.59218 -22.94834 -21.93827 -21.00216 -19.69714 -18.85543 -17.59241 -17.08297 -16.62217 -15.79937 -15.45853 -14.77367 -14.49035 -14.34226 -14.08571 -13.69968 -13.41210 -13.19923 -13.05019 -12.85414 -12.59444 -12.31863 -12.10908 -11.88529 -11.73609 -11.44113 -11.17613 -11.00366 -10.85710 -10.62242 -10.36281 -10.21586 -9.92900 -9.83587 -9.66220 -9.47877 -9.05203 -8.52612 -8.45327 -7.94372 -6.03462 -4.00850 1.21907 1.94793 2.91871 2.98981 3.31769 3.39225 3.42393 4.14242 4.27090 4.40600 4.46199 4.59732 4.75295 4.86665 5.00620 5.18558 5.25697 5.26659 5.28820 5.37064 5.46746 5.51770 5.62223 5.66839 5.75865 5.78253 5.88590 6.00395 6.25578 6.29107 6.43025 6.55987 6.82434 6.87473 7.01286 7.26280 7.41376 7.46933 7.80562 8.15185 8.54405 9.01188 9.59619 11.09800 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031815 B = 0.003835 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.863550 B = 7299.955862 C = 7741.895181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.132 4.132 12 C 0.103 3.897 13 N -0.599 5.599 14 C 0.531 3.469 15 O -0.533 6.533 16 C -0.073 4.073 17 H 0.116 0.884 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.076 4.076 21 S -0.242 6.242 22 C 0.110 3.890 23 C -0.120 4.120 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.735 -13.417 -1.267 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.090 4.090 11 C -0.170 4.170 12 C -0.019 4.019 13 N -0.332 5.332 14 C 0.316 3.684 15 O -0.410 6.410 16 C -0.204 4.204 17 H 0.134 0.866 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.225 4.225 21 S -0.015 6.015 22 C -0.012 4.012 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.136 -12.389 -2.048 23.730 hybrid contribution 0.574 -0.027 0.409 0.705 sum 20.710 -12.416 -1.639 24.202 Atomic orbital electron populations 1.69916 1.06274 1.26815 1.51329 1.25031 0.94696 0.99118 0.94674 0.86806 0.80339 0.83807 0.78492 1.20372 1.21492 1.19074 1.21133 0.89407 0.94345 1.50499 0.90845 1.19611 0.97216 0.91577 0.96210 1.21010 0.91937 0.99148 0.96946 1.22054 0.98296 0.94293 1.02388 1.21902 0.98773 0.93837 0.87403 1.48127 1.08059 1.51172 1.25884 1.19762 0.86571 0.78579 0.83493 1.90674 1.77512 1.48357 1.24454 1.23927 0.95510 0.97430 1.03559 0.86613 1.21941 0.99589 0.94812 0.99308 1.22371 0.96781 0.96359 1.00609 1.24451 0.97391 0.95513 1.05111 1.88179 1.21560 1.18930 1.72857 1.21731 0.78246 0.99022 1.02168 1.21834 1.02750 0.92814 0.98396 0.92804 0.96613 0.97097 0.91697 0.90931 0.91827 0.91149 0.90332 0.90576 0.88887 0.89893 0.89935 0.88929 0.87369 0.89464 0.91530 0.89133 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.90 5.47 -17.81 -0.10 1.80 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.27 8.94 -34.44 -0.31 -14.58 16 8 H 0.07 2.16 7.30 -52.49 -0.38 1.78 16 9 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 10 C -0.07 -1.34 2.10 -90.58 -0.19 -1.53 16 11 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 12 C 0.10 1.29 6.18 -3.71 -0.02 1.27 16 13 N -0.60 -8.69 2.98 -173.03 -0.52 -9.21 16 14 C 0.53 7.82 6.72 -10.98 -0.07 7.74 16 15 O -0.53 -9.50 15.35 5.56 0.09 -9.41 16 16 C -0.07 -0.81 2.91 -27.52 -0.08 -0.89 16 17 H 0.12 1.06 6.13 -51.93 -0.32 0.74 16 18 C -0.12 -1.06 5.87 -26.39 -0.15 -1.21 16 19 C -0.12 -0.93 6.34 -25.62 -0.16 -1.09 16 20 C -0.08 -0.58 7.52 38.30 0.29 -0.30 16 21 S -0.24 -2.88 22.64 -107.50 -2.43 -5.32 16 22 C 0.11 1.73 6.41 -3.93 -0.03 1.70 16 23 C -0.12 -2.19 5.17 -26.83 -0.14 -2.33 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.83 5.58 -51.93 -0.29 0.54 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.99 6.96 -51.93 -0.36 0.63 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.83 6.91 -51.93 -0.36 1.47 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -32.39 328.18 -9.68 -42.07 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.66 Total: -1.36 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.21 Total: -11.86 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.26 Total: -36.15 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.43 Total: -5.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.39 -9.68 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.128 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds