Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48499 * 109.47056 * 240.00546 * 3 2 1 5 5 H 1.48495 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46911 * 120.00459 * 3 2 1 7 7 C 1.37879 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00017 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.50203 * 60.06294 * 9 7 2 11 11 C 1.53038 * 109.49875 * 299.99975 * 9 7 2 12 12 C 1.53041 * 109.54065 * 178.68536 * 11 9 7 13 13 C 1.53194 * 109.31375 * 61.36487 * 12 11 9 14 14 N 1.46926 * 108.77454 * 305.36668 * 13 12 11 15 15 C 1.34778 * 120.63211 * 233.58764 * 14 13 12 16 16 O 1.21277 * 120.00234 * 184.67367 * 15 14 13 17 17 C 1.50701 * 119.99505 * 4.67620 * 15 14 13 18 18 H 1.08997 * 109.31446 * 324.90310 * 17 15 14 19 19 C 1.52581 * 109.39096 * 84.66033 * 17 15 14 20 20 C 1.52587 * 110.72334 * 190.81980 * 19 17 15 21 21 C 1.53095 * 109.95915 * 289.32356 * 20 19 17 22 22 S 1.81748 * 108.94848 * 62.96095 * 21 20 19 23 23 C 1.53099 * 109.38969 * 205.15394 * 17 15 14 24 24 C 1.46925 * 118.74042 * 53.85774 * 14 13 12 25 25 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46283 * 58.66334 * 11 9 7 27 27 H 1.09008 * 109.46055 * 298.70431 * 11 9 7 28 28 H 1.08993 * 109.49526 * 301.40921 * 12 11 9 29 29 H 1.09000 * 109.49981 * 181.31446 * 12 11 9 30 30 H 1.08993 * 109.58397 * 185.58081 * 13 12 11 31 31 H 1.09001 * 109.58817 * 65.15418 * 13 12 11 32 32 H 1.09004 * 109.22684 * 70.50165 * 19 17 15 33 33 H 1.08993 * 109.19110 * 311.12035 * 19 17 15 34 34 H 1.09007 * 109.38647 * 169.17903 * 20 19 17 35 35 H 1.08994 * 109.30910 * 49.42798 * 20 19 17 36 36 H 1.08999 * 109.57708 * 182.83764 * 21 20 19 37 37 H 1.09008 * 109.57344 * 303.09367 * 21 20 19 38 38 H 1.09000 * 109.57354 * 296.63696 * 23 17 15 39 39 H 1.08998 * 109.57514 * 56.88627 * 23 17 15 40 40 H 1.09002 * 109.58305 * 65.92807 * 24 14 13 41 41 H 1.09004 * 109.58848 * 186.35403 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5577 -0.8907 11 6 0.3714 -2.5811 1.2491 12 6 -0.4190 -3.8915 1.2337 13 6 0.5570 -5.0722 1.2511 14 7 1.4997 -4.9229 0.1341 15 6 1.6770 -5.9219 -0.7530 16 8 2.5186 -5.8204 -1.6204 17 6 0.8295 -7.1650 -0.6672 18 1 0.6253 -7.3905 0.3795 19 6 -0.4876 -6.9319 -1.4014 20 6 -1.4738 -8.0598 -1.1125 21 6 -1.0142 -9.3459 -1.8042 22 16 0.5887 -9.8486 -1.1104 23 6 1.5813 -8.3377 -1.3023 24 6 2.2500 -3.6662 0.0061 25 1 -0.4850 0.8401 0.0004 26 1 -0.3211 -1.7395 1.2617 27 1 1.0003 -2.5469 2.1388 28 1 -1.0296 -3.9374 0.3320 29 1 -1.0626 -3.9386 2.1121 30 1 0.0040 -6.0049 1.1404 31 1 1.1049 -5.0794 2.1933 32 1 -0.2977 -6.8871 -2.4738 33 1 -0.9181 -5.9858 -1.0734 34 1 -2.4603 -7.7819 -1.4839 35 1 -1.5259 -8.2262 -0.0366 36 1 -1.7483 -10.1337 -1.6356 37 1 -0.9091 -9.1675 -2.8744 38 1 1.7392 -8.1390 -2.3624 39 1 2.5440 -8.4653 -0.8074 40 1 2.9333 -3.5611 0.8489 41 1 2.8146 -3.6710 -0.9263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -58.004525 kcal Electronic energy + Delta-G solvation = -21124.839360 eV Core-core repulsion = 18129.691095 eV Total energy + Delta-G solvation = -2995.148266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06954 -37.14572 -36.24050 -33.52259 -31.87517 -31.33539 -30.14220 -27.42476 -25.43194 -25.01373 -23.19540 -21.81371 -21.30418 -19.68623 -18.29218 -17.53221 -16.40866 -16.02741 -15.63972 -14.98450 -14.88446 -14.61657 -14.21527 -13.73198 -13.58738 -13.42118 -13.09121 -13.01780 -12.75443 -12.66193 -12.08086 -12.00341 -11.60619 -11.55215 -11.20640 -11.04296 -10.98053 -10.86661 -10.75050 -10.33445 -9.99078 -9.91535 -9.85843 -9.52459 -9.24949 -8.87207 -8.42263 -7.95493 -7.84710 -6.05735 -4.12969 1.60785 2.32003 2.92208 3.29093 3.33551 3.36241 3.51973 4.39405 4.43899 4.51964 4.62352 4.75072 4.86388 5.02818 5.16687 5.24219 5.34214 5.38932 5.48213 5.55002 5.58114 5.69321 5.74946 5.77369 5.88801 6.05142 6.08279 6.28324 6.34237 6.42598 6.61297 6.74979 6.90301 7.11462 7.28167 7.64604 7.85925 7.95096 8.02827 8.32997 8.56223 8.90307 9.52165 10.99683 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.004033 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.790203 B = 6941.646307 C = 7249.062165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.105 3.895 14 N -0.599 5.599 15 C 0.516 3.484 16 O -0.550 6.550 17 C -0.108 4.108 18 H 0.103 0.897 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.082 4.082 22 S -0.271 6.271 23 C -0.057 4.057 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -15.935 1.071 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.018 4.018 14 N -0.331 5.331 15 C 0.301 3.699 16 O -0.429 6.429 17 C -0.131 4.131 18 H 0.121 0.879 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.230 4.230 22 S -0.044 6.044 23 C -0.206 4.206 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.912 -16.768 1.040 17.249 hybrid contribution 0.049 2.122 -0.394 2.159 sum -3.863 -14.646 0.647 15.160 Atomic orbital electron populations 1.69857 1.05900 1.26620 1.50418 1.24927 0.94857 0.99073 0.94863 0.86637 0.79603 0.82954 0.78707 1.20210 1.21291 1.20234 1.21043 0.92990 0.90303 1.51113 0.92527 1.19036 0.92834 0.91092 0.94748 0.95319 1.21639 0.99480 0.95374 0.98607 1.22002 0.97607 0.96651 1.00948 1.21835 0.91508 0.99181 0.89244 1.48305 1.41864 1.16039 1.26878 1.20329 0.83722 0.84236 0.81578 1.90662 1.35605 1.80651 1.35982 1.21560 0.95887 0.93333 1.02355 0.87913 1.21482 0.93290 0.99861 1.01192 1.21714 0.99193 0.93131 1.01650 1.23475 0.95957 1.01131 1.02486 1.86833 1.12035 1.22475 1.83016 1.23277 0.99789 0.92170 1.05345 1.22121 0.95066 0.81815 1.01503 0.92902 0.88595 0.94549 0.92419 0.92417 0.90892 0.91819 0.90953 0.89927 0.90245 0.90361 0.87811 0.89755 0.88709 0.87535 0.92635 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 11.31 55.43 0.63 -23.92 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.78 8.56 -34.44 -0.29 -14.07 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.01 2.27 -91.43 -0.21 0.80 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 12 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 13 C 0.11 1.56 6.26 -3.71 -0.02 1.53 16 14 N -0.60 -10.68 2.97 -172.50 -0.51 -11.20 16 15 C 0.52 8.92 6.75 -10.98 -0.07 8.85 16 16 O -0.55 -11.47 15.59 5.56 0.09 -11.38 16 17 C -0.11 -1.39 1.55 -91.93 -0.14 -1.53 16 18 H 0.10 1.18 6.18 -51.93 -0.32 0.86 16 19 C -0.12 -1.38 4.74 -27.16 -0.13 -1.51 16 20 C -0.12 -1.03 5.76 -26.89 -0.15 -1.19 16 21 C -0.08 -0.72 6.45 37.21 0.24 -0.48 16 22 S -0.27 -3.01 22.34 -107.50 -2.40 -5.42 16 23 C -0.06 -0.71 5.20 37.21 0.19 -0.52 16 24 C 0.12 2.46 5.67 -3.48 -0.02 2.44 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 27 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.86 5.35 -51.93 -0.28 0.59 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.08 1.02 8.08 -51.93 -0.42 0.61 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.09 1.26 7.98 -51.93 -0.41 0.85 16 39 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.80 7.03 -51.93 -0.37 1.44 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -29.06 326.90 -10.01 -39.08 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.72 Total: 1.10 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.00 Total: -9.04 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.12 Total: -35.12 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.40 Total: -5.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.06 -10.01 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.929 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds