Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48499 * 109.47056 * 240.00546 * 3 2 1 5 5 H 1.48495 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46911 * 120.00459 * 3 2 1 7 7 C 1.37879 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00017 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.50203 * 60.06294 * 9 7 2 11 11 C 1.53038 * 109.49875 * 299.99975 * 9 7 2 12 12 C 1.53041 * 109.54065 * 178.68536 * 11 9 7 13 13 C 1.53194 * 109.31375 * 61.36487 * 12 11 9 14 14 N 1.46926 * 108.77454 * 305.36668 * 13 12 11 15 15 C 1.34778 * 120.63211 * 233.58764 * 14 13 12 16 16 O 1.21277 * 120.00234 * 184.67367 * 15 14 13 17 17 C 1.50701 * 119.99505 * 4.67620 * 15 14 13 18 18 H 1.08997 * 109.31446 * 324.90310 * 17 15 14 19 19 C 1.52581 * 109.39096 * 84.66033 * 17 15 14 20 20 C 1.52587 * 110.72334 * 190.81980 * 19 17 15 21 21 C 1.53095 * 109.95915 * 289.32356 * 20 19 17 22 22 S 1.81748 * 108.94848 * 62.96095 * 21 20 19 23 23 C 1.53099 * 109.38969 * 205.15394 * 17 15 14 24 24 C 1.46925 * 118.74042 * 53.85774 * 14 13 12 25 25 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46283 * 58.66334 * 11 9 7 27 27 H 1.09008 * 109.46055 * 298.70431 * 11 9 7 28 28 H 1.08993 * 109.49526 * 301.40921 * 12 11 9 29 29 H 1.09000 * 109.49981 * 181.31446 * 12 11 9 30 30 H 1.08993 * 109.58397 * 185.58081 * 13 12 11 31 31 H 1.09001 * 109.58817 * 65.15418 * 13 12 11 32 32 H 1.09004 * 109.22684 * 70.50165 * 19 17 15 33 33 H 1.08993 * 109.19110 * 311.12035 * 19 17 15 34 34 H 1.09007 * 109.38647 * 169.17903 * 20 19 17 35 35 H 1.08994 * 109.30910 * 49.42798 * 20 19 17 36 36 H 1.08999 * 109.57708 * 182.83764 * 21 20 19 37 37 H 1.09008 * 109.57344 * 303.09367 * 21 20 19 38 38 H 1.09000 * 109.57354 * 296.63696 * 23 17 15 39 39 H 1.08998 * 109.57514 * 56.88627 * 23 17 15 40 40 H 1.09002 * 109.58305 * 65.92807 * 24 14 13 41 41 H 1.09004 * 109.58848 * 186.35403 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5577 -0.8907 11 6 0.3714 -2.5811 1.2491 12 6 -0.4190 -3.8915 1.2337 13 6 0.5570 -5.0722 1.2511 14 7 1.4997 -4.9229 0.1341 15 6 1.6770 -5.9219 -0.7530 16 8 2.5186 -5.8204 -1.6204 17 6 0.8295 -7.1650 -0.6672 18 1 0.6253 -7.3905 0.3795 19 6 -0.4876 -6.9319 -1.4014 20 6 -1.4738 -8.0598 -1.1125 21 6 -1.0142 -9.3459 -1.8042 22 16 0.5887 -9.8486 -1.1104 23 6 1.5813 -8.3377 -1.3023 24 6 2.2500 -3.6662 0.0061 25 1 -0.4850 0.8401 0.0004 26 1 -0.3211 -1.7395 1.2617 27 1 1.0003 -2.5469 2.1388 28 1 -1.0296 -3.9374 0.3320 29 1 -1.0626 -3.9386 2.1121 30 1 0.0040 -6.0049 1.1404 31 1 1.1049 -5.0794 2.1933 32 1 -0.2977 -6.8871 -2.4738 33 1 -0.9181 -5.9858 -1.0734 34 1 -2.4603 -7.7819 -1.4839 35 1 -1.5259 -8.2262 -0.0366 36 1 -1.7483 -10.1337 -1.6356 37 1 -0.9091 -9.1675 -2.8744 38 1 1.7392 -8.1390 -2.3624 39 1 2.5440 -8.4653 -0.8074 40 1 2.9333 -3.5611 0.8489 41 1 2.8146 -3.6710 -0.9263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -73.590118 kcal Electronic energy + Delta-G solvation = -21125.515202 eV Core-core repulsion = 18129.691095 eV Total energy + Delta-G solvation = -2995.824108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44632 -38.61866 -37.35276 -35.35280 -33.15460 -32.70188 -31.79358 -28.34614 -27.18421 -26.51301 -24.41323 -23.35142 -22.28557 -21.25354 -19.66045 -18.88034 -18.20329 -17.25460 -16.88828 -16.49362 -16.19979 -15.90830 -15.35868 -15.09055 -14.94810 -14.59801 -14.50330 -14.19479 -14.06905 -13.97024 -13.61179 -13.43067 -12.87169 -12.79327 -12.64146 -12.45954 -12.43185 -12.09713 -12.02300 -11.86174 -11.76687 -11.59892 -11.26578 -10.88074 -10.76808 -10.54923 -10.41125 -9.51662 -8.71396 -8.11719 -6.26748 0.74417 1.40943 1.41981 1.46901 1.49361 1.56522 2.14934 2.43205 3.14903 3.41684 3.54722 3.69054 3.85952 3.99406 4.05551 4.19909 4.26099 4.33192 4.37390 4.52027 4.54607 4.60883 4.65743 4.77644 4.79394 4.85404 4.86027 4.96647 4.99805 5.03251 5.12146 5.25936 5.29435 5.46951 5.55327 5.60586 5.92494 6.12645 6.33898 6.52467 6.82106 7.15886 7.41372 8.91549 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.004033 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.790203 B = 6941.646307 C = 7249.062165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.044 3.956 10 H -0.012 1.012 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.106 3.894 14 N -0.603 5.603 15 C 0.510 3.490 16 O -0.594 6.594 17 C -0.094 4.094 18 H 0.127 0.873 19 C -0.119 4.119 20 C -0.110 4.110 21 C -0.078 4.078 22 S -0.276 6.276 23 C -0.056 4.056 24 C 0.128 3.872 25 H 0.262 0.738 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 -17.631 2.407 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.025 3.975 10 H 0.006 0.994 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.015 4.015 14 N -0.334 5.334 15 C 0.298 3.702 16 O -0.475 6.475 17 C -0.117 4.117 18 H 0.144 0.856 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.226 4.226 22 S -0.049 6.049 23 C -0.205 4.205 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.283 -18.484 2.395 19.373 hybrid contribution 0.458 2.646 -0.870 2.822 sum -4.825 -15.839 1.525 16.628 Atomic orbital electron populations 1.69988 1.06998 1.27277 1.50761 1.25646 0.95683 1.02115 0.94515 0.85696 0.78496 0.79205 0.78774 1.20237 1.20684 1.19364 1.21420 0.93051 0.92039 1.51469 0.93138 1.18927 0.93015 0.91369 0.94206 0.99399 1.21433 0.98782 0.97231 0.97034 1.21899 0.97707 0.94627 1.02078 1.22070 0.90835 0.99905 0.88732 1.48365 1.42128 1.14859 1.28064 1.21209 0.83425 0.85226 0.80351 1.90638 1.37599 1.81676 1.37589 1.21564 0.95495 0.90656 1.03979 0.85574 1.21502 0.93110 1.00938 1.00171 1.21692 0.98960 0.91604 1.02569 1.23607 0.94677 1.01888 1.02432 1.86886 1.13509 1.21357 1.83117 1.23141 1.00136 0.93033 1.04189 1.21664 0.94528 0.82929 1.00294 0.92898 0.91862 0.94570 0.93299 0.89136 0.86875 0.90084 0.92312 0.90700 0.88239 0.89048 0.85443 0.89639 0.90376 0.88170 0.92175 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.51 11.31 21.45 0.24 -51.27 16 2 C 0.02 1.09 5.30 84.66 0.45 1.54 16 3 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.89 8.56 25.60 0.22 -29.68 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.04 2.19 2.27 -11.32 -0.03 2.17 16 10 H -0.01 -0.70 8.14 -2.38 -0.02 -0.71 16 11 C -0.11 -4.67 4.96 30.62 0.15 -4.52 16 12 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 13 C 0.11 2.83 6.26 86.36 0.54 3.37 16 14 N -0.60 -21.23 2.97 -818.05 -2.43 -23.65 16 15 C 0.51 17.57 6.75 87.66 0.59 18.16 16 16 O -0.59 -25.60 15.59 -3.02 -0.05 -25.64 16 17 C -0.09 -2.24 1.55 -11.65 -0.02 -2.26 16 18 H 0.13 2.41 6.18 -2.39 -0.01 2.40 16 19 C -0.12 -2.49 4.74 30.32 0.14 -2.34 16 20 C -0.11 -1.49 5.76 30.49 0.18 -1.31 16 21 C -0.08 -1.10 6.45 72.01 0.46 -0.63 16 22 S -0.28 -5.47 22.34 -56.49 -1.26 -6.73 16 23 C -0.06 -1.35 5.20 72.02 0.37 -0.97 16 24 C 0.13 5.63 5.67 86.51 0.49 6.12 16 25 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 27 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.11 2.16 5.35 -2.39 -0.01 2.15 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.39 8.08 -2.38 -0.02 1.37 16 33 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 36 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 2.11 7.98 -2.39 -0.02 2.09 16 39 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.05 2.50 7.03 -2.38 -0.02 2.48 16 Total: -1.00 -66.35 326.90 3.28 -63.08 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.00 Total: 12.98 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 3.74 Total: -14.16 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.18 Total: -74.92 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.26 Total: -6.73 kcal Total: -66.35 3.28 -63.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -66.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds