Wall clock time and date at job start Tue Mar 31 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48503 * 109.46724 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.47158 * 29.99935 * 3 2 1 6 6 H 1.48492 * 109.47123 * 150.00010 * 3 2 1 7 7 C 1.37871 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00309 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49883 * 60.06574 * 9 7 2 11 11 C 1.53047 * 109.49656 * 300.00291 * 9 7 2 12 12 C 1.53047 * 109.53507 * 178.65086 * 11 9 7 13 13 C 1.53191 * 109.31547 * 61.36558 * 12 11 9 14 14 N 1.46926 * 108.77558 * 305.36547 * 13 12 11 15 15 C 1.34779 * 120.62953 * 233.58725 * 14 13 12 16 16 O 1.21279 * 120.00014 * 355.26506 * 15 14 13 17 17 C 1.50695 * 119.99954 * 175.54307 * 15 14 13 18 18 H 1.08998 * 109.57745 * 34.27474 * 17 15 14 19 19 C 1.53095 * 109.57857 * 154.53696 * 17 15 14 20 20 C 1.52579 * 109.96043 * 182.82921 * 19 17 15 21 21 C 1.52581 * 110.72590 * 289.32858 * 20 19 17 22 22 C 1.53096 * 109.95910 * 70.67577 * 21 20 19 23 23 S 1.81750 * 108.83675 * 296.97075 * 22 21 20 24 24 C 1.46929 * 118.74153 * 53.85796 * 14 13 12 25 25 H 0.96999 * 120.00720 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.45929 * 58.63238 * 11 9 7 27 27 H 1.08994 * 109.44814 * 298.66101 * 11 9 7 28 28 H 1.09000 * 109.49393 * 301.40950 * 12 11 9 29 29 H 1.09006 * 109.51945 * 181.33342 * 12 11 9 30 30 H 1.08992 * 109.58692 * 185.57740 * 13 12 11 31 31 H 1.08997 * 109.58399 * 65.14731 * 13 12 11 32 32 H 1.08996 * 109.38790 * 302.98357 * 19 17 15 33 33 H 1.09004 * 109.38754 * 62.77868 * 19 17 15 34 34 H 1.09001 * 109.22664 * 49.64751 * 20 19 17 35 35 H 1.08994 * 109.23080 * 169.00314 * 20 19 17 36 36 H 1.09002 * 109.38962 * 190.82264 * 21 20 19 37 37 H 1.08996 * 109.39101 * 310.61932 * 21 20 19 38 38 H 1.08995 * 109.57943 * 56.78126 * 22 21 20 39 39 H 1.08997 * 109.57341 * 177.04244 * 22 21 20 40 40 H 1.08996 * 109.58298 * 65.92570 * 24 14 13 41 41 H 1.08994 * 109.58914 * 186.35671 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5577 -0.8907 11 6 0.3714 -2.5811 1.2492 12 6 -0.4195 -3.8912 1.2332 13 6 0.5560 -5.0723 1.2503 14 7 1.4989 -4.9230 0.1334 15 6 1.6758 -5.9218 -0.7540 16 8 1.1196 -6.9866 -0.5875 17 6 2.5697 -5.7176 -1.9500 18 1 3.4007 -5.0668 -1.6780 19 6 3.1104 -7.0695 -2.4231 20 6 4.0720 -6.8663 -3.5901 21 6 3.3163 -6.4358 -4.8438 22 6 2.8018 -5.0035 -4.6779 23 16 1.6168 -4.9615 -3.3004 24 6 2.2498 -3.6665 0.0058 25 1 -0.4851 0.8400 0.0004 26 1 -0.3207 -1.7392 1.2619 27 1 1.0005 -2.5475 2.1386 28 1 -1.0300 -3.9366 0.3314 29 1 -1.0636 -3.9386 2.1114 30 1 0.0028 -6.0048 1.1393 31 1 1.1040 -5.0799 2.1925 32 1 3.6359 -7.5565 -1.6017 33 1 2.2805 -7.6985 -2.7452 34 1 4.7983 -6.0973 -3.3271 35 1 4.5963 -7.8007 -3.7902 36 1 3.9849 -6.4828 -5.7034 37 1 2.4718 -7.1058 -5.0052 38 1 3.6374 -4.3380 -4.4612 39 1 2.3089 -4.6839 -5.5960 40 1 2.9329 -3.5620 0.8486 41 1 2.8143 -3.6713 -0.9266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:59 Heat of formation + Delta-G solvation = -54.789220 kcal Electronic energy + Delta-G solvation = -21196.764384 eV Core-core repulsion = 18201.755544 eV Total energy + Delta-G solvation = -2995.008840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77125 -37.12991 -36.33405 -33.32587 -32.25581 -31.10271 -30.04728 -27.66566 -25.11596 -24.70955 -23.26643 -21.54547 -20.74202 -19.91880 -18.42444 -17.05623 -16.77177 -16.06569 -15.61873 -14.97128 -14.78383 -14.46174 -14.06598 -13.69481 -13.43229 -13.26829 -13.19300 -12.77307 -12.61477 -12.55692 -12.01671 -11.88732 -11.59021 -11.38309 -11.03922 -10.98854 -10.83722 -10.79180 -10.65882 -10.26482 -9.95727 -9.77530 -9.69171 -9.56467 -9.17393 -8.83866 -8.39641 -7.92503 -7.46367 -6.02313 -4.10192 1.52616 2.55196 3.27790 3.29323 3.34990 3.36363 3.44608 4.39369 4.55464 4.62198 4.74177 4.82845 5.01932 5.13954 5.27340 5.34109 5.48802 5.54777 5.68176 5.72682 5.77522 5.86035 5.86572 5.89587 5.98454 6.05359 6.22515 6.25473 6.32370 6.53621 6.55986 6.78223 6.96590 7.18264 7.34867 7.68259 7.88823 7.94953 8.07516 8.34971 8.53750 8.92866 9.54625 11.02983 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.005943 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.755786 B = 4710.532401 C = 5783.452145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.037 0.963 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.594 5.594 15 C 0.533 3.467 16 O -0.549 6.549 17 C -0.083 4.083 18 H 0.109 0.891 19 C -0.103 4.103 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.093 4.093 23 S -0.203 6.203 24 C 0.108 3.892 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -10.584 -5.474 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.024 3.976 10 H 0.055 0.945 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.007 4.007 14 N -0.325 5.325 15 C 0.319 3.681 16 O -0.429 6.429 17 C -0.214 4.214 18 H 0.127 0.873 19 C -0.142 4.142 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.242 4.242 23 S 0.024 5.976 24 C -0.014 4.014 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.939 -10.588 -5.358 12.853 hybrid contribution 1.737 0.756 0.027 1.894 sum 6.676 -9.832 -5.331 13.026 Atomic orbital electron populations 1.69872 1.05872 1.26472 1.50208 1.24913 0.94800 0.98971 0.94957 0.86625 0.79841 0.83592 0.78105 1.20687 1.21270 1.19963 1.21024 0.92794 0.90301 1.51243 0.92630 1.19029 0.92732 0.90629 0.95204 0.94499 1.21647 0.99475 0.95512 0.98469 1.22002 0.97702 0.96464 1.01043 1.21607 0.91243 0.99714 0.88099 1.48245 1.41539 1.15892 1.26833 1.19557 0.81768 0.83893 0.82888 1.90627 1.49992 1.25932 1.76326 1.23392 1.00897 1.01306 0.95833 0.87275 1.21581 0.99877 0.94633 0.98125 1.21549 0.98183 1.02191 0.94708 1.21736 1.00815 0.95371 0.98129 1.23545 1.01266 0.99905 0.99469 1.87467 1.23500 1.80393 1.06239 1.22336 0.95364 0.82996 1.00680 0.92943 0.88601 0.94684 0.92366 0.92479 0.90291 0.92175 0.90794 0.89651 0.91673 0.90883 0.90963 0.90540 0.89621 0.87576 0.92365 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 11.31 55.43 0.63 -23.89 16 2 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.51 -13.32 8.57 -34.45 -0.30 -13.61 16 8 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.04 1.02 2.26 -91.42 -0.21 0.81 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.56 4.96 -26.68 -0.13 -2.69 16 12 C -0.13 -2.59 6.08 -26.61 -0.16 -2.76 16 13 C 0.12 2.10 6.42 -3.71 -0.02 2.08 16 14 N -0.59 -11.30 2.97 -172.51 -0.51 -11.81 16 15 C 0.53 9.96 6.82 -10.99 -0.07 9.88 16 16 O -0.55 -11.40 15.60 5.56 0.09 -11.31 16 17 C -0.08 -1.29 2.06 -27.84 -0.06 -1.34 16 18 H 0.11 1.60 6.23 -51.93 -0.32 1.28 16 19 C -0.10 -1.32 4.53 -26.90 -0.12 -1.45 16 20 C -0.13 -1.28 5.61 -27.16 -0.15 -1.43 16 21 C -0.12 -1.17 5.75 -26.90 -0.15 -1.32 16 22 C -0.09 -1.07 6.46 37.21 0.24 -0.83 16 23 S -0.20 -3.27 21.66 -107.50 -2.33 -5.60 16 24 C 0.11 2.13 5.52 -3.48 -0.02 2.11 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.10 2.46 6.04 -51.93 -0.31 2.14 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.43 7.03 -51.93 -0.37 1.07 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.36 5.45 -51.93 -0.28 1.08 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -28.95 327.09 -10.20 -39.14 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.72 Total: 1.92 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.25 Total: -8.90 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.12 Total: -35.70 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.33 Total: -5.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.95 -10.20 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.647 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds