Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48497 * 109.47376 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46904 * 300.00635 * 3 2 1 6 6 H 1.48496 * 109.47099 * 60.00227 * 3 2 1 7 7 C 1.37875 * 120.00563 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99816 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52340 * 59.91871 * 9 7 2 11 11 C 1.53044 * 109.49907 * 299.84423 * 9 7 2 12 12 C 1.53042 * 109.53805 * 178.68295 * 11 9 7 13 13 C 1.52757 * 109.38289 * 61.23847 * 12 11 9 14 14 N 1.46923 * 109.01143 * 305.58595 * 13 12 11 15 15 C 1.34775 * 120.63517 * 233.59149 * 14 13 12 16 16 O 1.21286 * 120.00511 * 184.09916 * 15 14 13 17 17 C 1.50704 * 119.99777 * 4.09202 * 15 14 13 18 18 H 1.09004 * 109.57633 * 329.57073 * 17 15 14 19 19 C 1.53094 * 109.57636 * 209.31565 * 17 15 14 20 20 C 1.52580 * 109.95751 * 177.16937 * 19 17 15 21 21 C 1.52576 * 110.72535 * 70.67585 * 20 19 17 22 22 C 1.53098 * 109.95610 * 289.32283 * 21 20 19 23 23 S 1.81751 * 108.94562 * 62.96483 * 22 21 20 24 24 C 1.46927 * 118.73720 * 53.31018 * 14 13 12 25 25 H 0.96993 * 120.00255 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.45848 * 298.69971 * 11 9 7 27 27 H 1.09000 * 109.46035 * 58.65744 * 11 9 7 28 28 H 1.08996 * 109.49408 * 181.31793 * 12 11 9 29 29 H 1.08998 * 109.49659 * 301.38021 * 12 11 9 30 30 H 1.09007 * 109.50980 * 185.70488 * 13 12 11 31 31 H 1.08996 * 109.43555 * 65.42410 * 13 12 11 32 32 H 1.09010 * 109.39099 * 57.01749 * 19 17 15 33 33 H 1.09000 * 109.31155 * 297.27033 * 19 17 15 34 34 H 1.09004 * 109.22553 * 310.35325 * 20 19 17 35 35 H 1.09005 * 109.22563 * 190.99661 * 20 19 17 36 36 H 1.09008 * 109.39000 * 169.17809 * 21 20 19 37 37 H 1.09000 * 109.31351 * 49.42813 * 21 20 19 38 38 H 1.09003 * 109.57562 * 182.83013 * 22 21 20 39 39 H 1.08996 * 109.57479 * 303.09222 * 22 21 20 40 40 H 1.08996 * 109.58432 * 66.43025 * 24 14 13 41 41 H 1.09000 * 109.59103 * 186.71592 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6228 -2.5570 -0.8893 11 6 0.3746 -2.5829 1.2511 12 6 -0.4158 -3.8934 1.2357 13 6 0.5562 -5.0718 1.2459 14 7 1.5004 -4.9231 0.1302 15 6 1.6750 -5.9204 -0.7594 16 8 2.5105 -5.8153 -1.6322 17 6 0.8320 -7.1664 -0.6694 18 1 0.5635 -7.3514 0.3707 19 6 1.6203 -8.3596 -1.2158 20 6 0.8014 -9.6381 -1.0643 21 6 -0.3783 -9.6415 -2.0319 22 6 -1.4202 -8.6109 -1.5890 23 16 -0.6778 -6.9534 -1.6595 24 6 2.2462 -3.6640 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 1.0055 -2.5499 2.1393 27 1 -0.3179 -1.7413 1.2665 28 1 -1.0573 -3.9416 2.1155 29 1 -1.0289 -3.9378 0.3355 30 1 0.0007 -6.0028 1.1329 31 1 1.1032 -5.0825 2.1886 32 1 2.5542 -8.4603 -0.6626 33 1 1.8406 -8.1937 -2.2703 34 1 0.4279 -9.7062 -0.0425 35 1 1.4378 -10.4986 -1.2712 36 1 -0.8325 -10.6324 -2.0453 37 1 -0.0248 -9.3919 -3.0323 38 1 -2.2821 -8.6535 -2.2550 39 1 -1.7362 -8.8264 -0.5684 40 1 2.9338 -3.5575 0.8378 41 1 2.8075 -3.6673 -0.9355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -53.865814 kcal Electronic energy + Delta-G solvation = -20991.754908 eV Core-core repulsion = 17996.786110 eV Total energy + Delta-G solvation = -2994.968798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78142 -37.18689 -36.39492 -33.54224 -31.91031 -31.28047 -30.15593 -27.79810 -25.12553 -24.79460 -23.16639 -21.68619 -20.92111 -19.87467 -18.42225 -17.09980 -16.89959 -16.16858 -15.61594 -15.00937 -14.66950 -14.55923 -14.16373 -13.74554 -13.68988 -13.34596 -13.04480 -12.89938 -12.69222 -12.56956 -12.01583 -11.97140 -11.68817 -11.55790 -11.11751 -10.98019 -10.81736 -10.80722 -10.66776 -10.23667 -9.94681 -9.81436 -9.76778 -9.47467 -9.26319 -8.79981 -8.37492 -7.91663 -7.68393 -6.00238 -4.07442 1.38068 2.38508 3.27879 3.30028 3.37729 3.40376 3.45759 4.42960 4.43932 4.49731 4.61589 4.68624 4.89848 4.94846 5.14739 5.29240 5.35312 5.39261 5.46386 5.61117 5.65391 5.75052 5.76321 5.84283 5.88777 6.11190 6.14430 6.35349 6.41398 6.50478 6.66913 6.82706 6.95180 7.19224 7.34568 7.71042 7.90396 7.98747 8.09176 8.37851 8.56442 8.96309 9.57442 11.05337 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.004280 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.979400 B = 6541.142410 C = 6778.107159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.594 5.594 15 C 0.529 3.471 16 O -0.537 6.537 17 C -0.083 4.083 18 H 0.106 0.894 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.093 4.093 23 S -0.209 6.209 24 C 0.118 3.882 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -18.787 1.794 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.016 4.016 14 N -0.326 5.326 15 C 0.314 3.686 16 O -0.415 6.415 17 C -0.214 4.214 18 H 0.124 0.876 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.241 4.241 23 S 0.018 5.982 24 C -0.003 4.003 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.170 -17.666 0.827 17.967 hybrid contribution 0.667 -0.098 0.812 1.056 sum -2.502 -17.765 1.639 18.015 Atomic orbital electron populations 1.69886 1.05880 1.26355 1.50523 1.24933 0.94846 0.99062 0.94942 0.86529 0.80187 0.83708 0.77542 1.19738 1.21020 1.21053 1.21105 0.93011 0.90251 1.50884 0.92435 1.18977 0.92929 0.91025 0.94945 0.95146 1.21628 0.99436 0.95467 0.98459 1.21910 0.97644 0.96330 1.01299 1.21735 0.91432 0.99465 0.88935 1.48248 1.41787 1.15730 1.26796 1.19511 0.83524 0.83570 0.81981 1.90669 1.35605 1.79915 1.35290 1.23458 0.97046 0.98163 1.02740 0.87630 1.21597 0.97924 0.91323 1.03594 1.21546 0.97176 0.98061 0.99763 1.21732 0.95339 0.98609 1.00466 1.23543 1.00819 0.94636 1.05097 1.87493 1.24531 1.16175 1.70045 1.22050 0.95107 0.81589 1.01546 0.93030 0.94656 0.88606 0.92467 0.91916 0.91080 0.91951 0.90641 0.89413 0.91811 0.90763 0.90894 0.90376 0.87579 0.89855 0.92581 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.13 -2.43 6.06 -26.83 -0.16 -2.59 16 13 C 0.11 1.71 6.24 -3.94 -0.02 1.68 16 14 N -0.59 -11.28 2.98 -173.03 -0.52 -11.79 16 15 C 0.53 9.85 6.78 -10.98 -0.07 9.78 16 16 O -0.54 -11.78 15.66 5.55 0.09 -11.69 16 17 C -0.08 -1.16 2.16 -27.83 -0.06 -1.22 16 18 H 0.11 1.27 6.04 -51.93 -0.31 0.96 16 19 C -0.11 -1.26 4.58 -26.90 -0.12 -1.38 16 20 C -0.13 -1.10 5.61 -27.16 -0.15 -1.25 16 21 C -0.12 -1.01 5.76 -26.90 -0.15 -1.17 16 22 C -0.09 -0.86 6.45 37.21 0.24 -0.62 16 23 S -0.21 -2.97 21.70 -107.50 -2.33 -5.30 16 24 C 0.12 2.60 5.65 -3.71 -0.02 2.58 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.46 6.05 -51.93 -0.31 2.14 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.95 5.41 -51.92 -0.28 0.67 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 34 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.87 7.03 -51.93 -0.37 1.51 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -30.43 327.02 -10.20 -40.63 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.71 Total: 0.25 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.26 Total: -8.75 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.11 Total: -36.28 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.33 Total: -5.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.43 -10.20 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.237 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds