Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47332 * 240.00320 * 3 2 1 5 5 H 1.48506 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47279 * 119.99987 * 3 2 1 7 7 C 1.37872 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99722 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49732 * 300.06636 * 9 7 2 11 11 C 1.53035 * 109.52628 * 60.14623 * 9 7 2 12 12 C 1.53038 * 109.54175 * 181.33267 * 11 9 7 13 13 C 1.53195 * 109.31078 * 298.63655 * 12 11 9 14 14 N 1.47207 * 108.85456 * 54.64814 * 13 12 11 15 15 C 1.34778 * 120.81118 * 126.33789 * 14 13 12 16 16 O 1.21286 * 119.99664 * 180.14339 * 15 14 13 17 17 C 1.50696 * 120.00030 * 0.14238 * 15 14 13 18 18 H 1.08996 * 109.57508 * 30.00404 * 17 15 14 19 19 C 1.53099 * 109.57341 * 150.25613 * 17 15 14 20 20 C 1.52570 * 109.96551 * 182.69713 * 19 17 15 21 21 C 1.52574 * 110.84279 * 289.52203 * 20 19 17 22 22 C 1.53099 * 109.95990 * 70.62584 * 21 20 19 23 23 S 1.81744 * 109.57652 * 269.74141 * 17 15 14 24 24 C 1.46926 * 118.55531 * 306.47735 * 14 13 12 25 25 H 0.97005 * 120.00095 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46332 * 301.35732 * 11 9 7 27 27 H 1.09004 * 109.45942 * 61.30637 * 11 9 7 28 28 H 1.09002 * 109.49557 * 58.58503 * 12 11 9 29 29 H 1.08996 * 109.50003 * 178.68400 * 12 11 9 30 30 H 1.08996 * 109.58670 * 174.42176 * 13 12 11 31 31 H 1.08997 * 109.58526 * 294.84243 * 13 12 11 32 32 H 1.08998 * 109.39553 * 302.98137 * 19 17 15 33 33 H 1.09000 * 109.39095 * 62.68547 * 19 17 15 34 34 H 1.08999 * 109.20330 * 169.13738 * 20 19 17 35 35 H 1.09006 * 109.12422 * 49.84807 * 20 19 17 36 36 H 1.09002 * 109.39301 * 310.47446 * 21 20 19 37 37 H 1.09006 * 109.30934 * 190.72481 * 21 20 19 38 38 H 1.08998 * 109.57521 * 177.16531 * 22 21 20 39 39 H 1.09001 * 109.68038 * 56.84433 * 22 21 20 40 40 H 1.09002 * 109.58861 * 293.68122 * 24 14 13 41 41 H 1.08996 * 109.58519 * 173.40013 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8890 11 6 0.3730 -2.5828 -1.2511 12 6 -0.4174 -3.8932 -1.2349 13 6 0.5587 -5.0738 -1.2495 14 7 1.5025 -4.9246 -0.1297 15 6 1.6801 -5.9206 0.7608 16 8 2.4597 -5.7808 1.6794 17 6 0.9100 -7.2077 0.6153 18 1 0.7027 -7.3920 -0.4388 19 6 1.7334 -8.3653 1.1862 20 6 0.9908 -9.6826 0.9831 21 6 -0.2345 -9.7602 1.8889 22 6 -1.3059 -8.7801 1.4039 23 16 -0.6547 -7.0881 1.5320 24 6 2.2460 -3.6639 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 -0.3195 -1.7412 -1.2657 27 1 1.0030 -2.5497 -2.1401 28 1 -1.0290 -3.9379 -0.3338 29 1 -1.0599 -3.9415 -2.1140 30 1 0.0057 -6.0065 -1.1383 31 1 1.1078 -5.0823 -2.1910 32 1 2.6970 -8.4090 0.6786 33 1 1.8945 -8.2037 2.2520 34 1 1.6607 -10.5110 1.2136 35 1 0.6735 -9.7570 -0.0571 36 1 0.0530 -9.5063 2.9092 37 1 -0.6350 -10.7738 1.8675 38 1 -2.1969 -8.8765 2.0244 39 1 -1.5586 -8.9966 0.3659 40 1 2.9328 -3.5574 -0.8409 41 1 2.8081 -3.6649 0.9327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = -54.472095 kcal Electronic energy + Delta-G solvation = -20976.838719 eV Core-core repulsion = 17981.843631 eV Total energy + Delta-G solvation = -2994.995088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.75992 -37.17421 -36.38441 -33.52979 -31.91450 -31.26769 -30.13892 -27.80274 -25.11966 -24.79345 -23.16970 -21.67780 -20.91773 -19.87419 -18.42429 -17.08653 -16.89938 -16.16021 -15.61209 -15.01933 -14.66200 -14.56300 -14.16768 -13.75794 -13.67075 -13.34847 -13.01705 -12.90489 -12.67412 -12.58013 -12.00743 -11.97183 -11.69949 -11.56596 -11.11397 -10.94657 -10.82997 -10.79842 -10.70952 -10.25309 -9.94073 -9.81261 -9.76889 -9.46444 -9.26766 -8.81215 -8.36613 -7.91415 -7.69671 -5.99577 -4.06996 1.37505 2.37568 3.28252 3.32962 3.37265 3.38239 3.44835 4.42731 4.44093 4.49033 4.61131 4.68385 4.89453 4.95993 5.14810 5.29595 5.34961 5.38937 5.46009 5.60747 5.65653 5.74776 5.75951 5.83098 5.88606 6.11135 6.14293 6.35480 6.41539 6.50658 6.67039 6.82558 6.95396 7.19363 7.34891 7.70924 7.90541 7.99211 8.09490 8.38252 8.56812 8.96222 9.57726 11.05895 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033681 B = 0.004247 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.130039 B = 6591.813337 C = 6853.562905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.107 3.893 14 N -0.594 5.594 15 C 0.529 3.471 16 O -0.537 6.537 17 C -0.081 4.081 18 H 0.105 0.895 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.092 4.092 23 S -0.210 6.210 24 C 0.117 3.883 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -18.987 -2.107 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.171 4.171 13 C -0.016 4.016 14 N -0.326 5.326 15 C 0.314 3.686 16 O -0.415 6.415 17 C -0.213 4.213 18 H 0.123 0.877 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.241 4.241 23 S 0.016 5.984 24 C -0.004 4.004 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.869 -17.875 -1.124 18.139 hybrid contribution 0.791 -0.080 -0.810 1.135 sum -2.078 -17.956 -1.934 18.179 Atomic orbital electron populations 1.69869 1.05880 1.26572 1.50335 1.24927 0.94848 0.99034 0.94920 0.86642 0.79588 0.83026 0.78650 1.20284 1.21307 1.20223 1.21030 0.92929 0.90287 1.51162 0.92552 1.18960 0.92912 0.90988 0.94927 0.95165 1.21632 0.99446 0.95470 0.98471 1.21974 0.97566 0.96261 1.01265 1.21872 0.91384 0.99512 0.88817 1.48323 1.41792 1.15670 1.26819 1.19505 0.82734 0.83929 0.82438 1.90672 1.37734 1.80806 1.32250 1.23439 0.96828 0.98041 1.02985 0.87689 1.21589 0.98005 0.91413 1.03434 1.21540 0.97214 0.97767 1.00021 1.21729 0.94803 0.98934 1.00665 1.23544 1.01171 0.94457 1.04908 1.87472 1.22404 1.15100 1.73395 1.22046 0.95164 0.81651 1.01535 0.92916 0.88607 0.94655 0.91944 0.92459 0.91022 0.91942 0.90622 0.89422 0.90756 0.91826 0.90355 0.90899 0.87579 0.89840 0.92577 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.10 8.56 -34.44 -0.29 -14.39 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.54 4.96 -26.69 -0.13 -2.68 16 12 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 13 C 0.11 1.71 6.23 -3.56 -0.02 1.69 16 14 N -0.59 -11.29 2.98 -172.54 -0.51 -11.81 16 15 C 0.53 9.85 6.78 -10.99 -0.07 9.78 16 16 O -0.54 -11.82 15.65 5.55 0.09 -11.73 16 17 C -0.08 -1.14 2.07 -27.83 -0.06 -1.20 16 18 H 0.11 1.26 6.22 -51.93 -0.32 0.94 16 19 C -0.11 -1.26 4.59 -26.90 -0.12 -1.38 16 20 C -0.13 -1.10 5.61 -27.17 -0.15 -1.25 16 21 C -0.12 -1.00 5.75 -26.90 -0.15 -1.16 16 22 C -0.09 -0.85 6.46 37.21 0.24 -0.61 16 23 S -0.21 -2.96 21.65 -107.50 -2.33 -5.29 16 24 C 0.12 2.57 5.65 -3.71 -0.02 2.55 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.10 2.46 6.05 -51.93 -0.31 2.15 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.96 5.52 -51.93 -0.29 0.68 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.20 7.87 -51.93 -0.41 0.79 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.08 0.71 8.06 -51.93 -0.42 0.30 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.88 7.00 -51.93 -0.36 1.51 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -30.43 327.18 -10.20 -40.63 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.73 Total: 0.29 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.26 Total: -8.73 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.11 Total: -36.34 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.33 Total: -5.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.43 -10.20 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.840 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds