Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47332 * 240.00320 * 3 2 1 5 5 H 1.48506 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47279 * 119.99987 * 3 2 1 7 7 C 1.37872 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99722 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49732 * 300.06636 * 9 7 2 11 11 C 1.53035 * 109.52628 * 60.14623 * 9 7 2 12 12 C 1.53038 * 109.54175 * 181.33267 * 11 9 7 13 13 C 1.53195 * 109.31078 * 298.63655 * 12 11 9 14 14 N 1.47207 * 108.85456 * 54.64814 * 13 12 11 15 15 C 1.34778 * 120.81118 * 126.33789 * 14 13 12 16 16 O 1.21286 * 119.99664 * 180.14339 * 15 14 13 17 17 C 1.50696 * 120.00030 * 0.14238 * 15 14 13 18 18 H 1.08996 * 109.57508 * 30.00404 * 17 15 14 19 19 C 1.53099 * 109.57341 * 150.25613 * 17 15 14 20 20 C 1.52570 * 109.96551 * 182.69713 * 19 17 15 21 21 C 1.52574 * 110.84279 * 289.52203 * 20 19 17 22 22 C 1.53099 * 109.95990 * 70.62584 * 21 20 19 23 23 S 1.81744 * 109.57652 * 269.74141 * 17 15 14 24 24 C 1.46926 * 118.55531 * 306.47735 * 14 13 12 25 25 H 0.97005 * 120.00095 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46332 * 301.35732 * 11 9 7 27 27 H 1.09004 * 109.45942 * 61.30637 * 11 9 7 28 28 H 1.09002 * 109.49557 * 58.58503 * 12 11 9 29 29 H 1.08996 * 109.50003 * 178.68400 * 12 11 9 30 30 H 1.08996 * 109.58670 * 174.42176 * 13 12 11 31 31 H 1.08997 * 109.58526 * 294.84243 * 13 12 11 32 32 H 1.08998 * 109.39553 * 302.98137 * 19 17 15 33 33 H 1.09000 * 109.39095 * 62.68547 * 19 17 15 34 34 H 1.08999 * 109.20330 * 169.13738 * 20 19 17 35 35 H 1.09006 * 109.12422 * 49.84807 * 20 19 17 36 36 H 1.09002 * 109.39301 * 310.47446 * 21 20 19 37 37 H 1.09006 * 109.30934 * 190.72481 * 21 20 19 38 38 H 1.08998 * 109.57521 * 177.16531 * 22 21 20 39 39 H 1.09001 * 109.68038 * 56.84433 * 22 21 20 40 40 H 1.09002 * 109.58861 * 293.68122 * 24 14 13 41 41 H 1.08996 * 109.58519 * 173.40013 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8890 11 6 0.3730 -2.5828 -1.2511 12 6 -0.4174 -3.8932 -1.2349 13 6 0.5587 -5.0738 -1.2495 14 7 1.5025 -4.9246 -0.1297 15 6 1.6801 -5.9206 0.7608 16 8 2.4597 -5.7808 1.6794 17 6 0.9100 -7.2077 0.6153 18 1 0.7027 -7.3920 -0.4388 19 6 1.7334 -8.3653 1.1862 20 6 0.9908 -9.6826 0.9831 21 6 -0.2345 -9.7602 1.8889 22 6 -1.3059 -8.7801 1.4039 23 16 -0.6547 -7.0881 1.5320 24 6 2.2460 -3.6639 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 -0.3195 -1.7412 -1.2657 27 1 1.0030 -2.5497 -2.1401 28 1 -1.0290 -3.9379 -0.3338 29 1 -1.0599 -3.9415 -2.1140 30 1 0.0057 -6.0065 -1.1383 31 1 1.1078 -5.0823 -2.1910 32 1 2.6970 -8.4090 0.6786 33 1 1.8945 -8.2037 2.2520 34 1 1.6607 -10.5110 1.2136 35 1 0.6735 -9.7570 -0.0571 36 1 0.0530 -9.5063 2.9092 37 1 -0.6350 -10.7738 1.8675 38 1 -2.1969 -8.8765 2.0244 39 1 -1.5586 -8.9966 0.3659 40 1 2.9328 -3.5574 -0.8409 41 1 2.8081 -3.6649 0.9327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -71.739730 kcal Electronic energy + Delta-G solvation = -20977.587499 eV Core-core repulsion = 17981.843631 eV Total energy + Delta-G solvation = -2995.743869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25605 -38.61771 -37.43267 -35.41467 -33.30432 -32.73073 -31.78588 -28.80685 -27.01732 -26.21482 -24.30311 -23.34752 -21.75649 -21.45601 -19.96678 -18.67758 -18.07746 -17.97252 -16.94414 -16.58033 -16.18192 -15.65945 -15.29135 -15.13888 -14.90944 -14.65237 -14.58942 -14.12023 -14.06712 -13.94285 -13.61648 -13.40761 -12.86116 -12.76517 -12.63367 -12.53588 -12.36540 -11.96972 -11.85709 -11.79251 -11.66038 -11.58253 -11.27868 -10.94408 -10.78990 -10.55797 -10.42487 -9.55414 -8.77762 -8.10885 -6.26856 0.28433 1.41051 1.42953 1.48327 1.50347 1.88396 1.99504 2.43200 3.15480 3.32471 3.55902 3.77685 3.89999 3.98115 4.13247 4.15937 4.23507 4.34264 4.42203 4.51324 4.58796 4.65554 4.72957 4.78322 4.82622 4.93677 4.95527 5.02297 5.09522 5.11106 5.14718 5.25836 5.36508 5.44665 5.53522 5.60163 5.91771 6.12179 6.32536 6.44569 6.82134 7.08111 7.41401 8.92812 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033681 B = 0.004247 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.130039 B = 6591.813337 C = 6853.562905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.043 3.957 10 H -0.019 1.019 11 C -0.104 4.104 12 C -0.124 4.124 13 C 0.109 3.891 14 N -0.599 5.599 15 C 0.521 3.479 16 O -0.582 6.582 17 C -0.063 4.063 18 H 0.134 0.866 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.071 4.071 23 S -0.286 6.286 24 C 0.129 3.871 25 H 0.262 0.738 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -21.536 -4.010 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.072 0.928 9 C 0.024 3.976 10 H -0.001 1.001 11 C -0.143 4.143 12 C -0.162 4.162 13 C -0.012 4.012 14 N -0.331 5.331 15 C 0.308 3.692 16 O -0.462 6.462 17 C -0.194 4.194 18 H 0.151 0.849 19 C -0.143 4.143 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.218 4.218 23 S -0.061 6.061 24 C 0.007 3.993 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.404 -20.449 -3.047 20.954 hybrid contribution 0.915 0.697 -0.145 1.160 sum -2.489 -19.752 -3.192 20.163 Atomic orbital electron populations 1.70017 1.07167 1.27307 1.50707 1.25705 0.95686 1.02333 0.94462 0.85639 0.78419 0.78906 0.78855 1.19087 1.20738 1.20209 1.21405 0.93099 0.91834 1.51556 0.92830 1.18848 0.93077 0.91635 0.94043 1.00129 1.21421 0.98758 0.96951 0.97136 1.21863 0.97731 0.94804 1.01801 1.22083 0.90723 0.99742 0.88684 1.48395 1.42060 1.14620 1.27981 1.20397 0.82307 0.85256 0.81241 1.90641 1.39750 1.81996 1.33861 1.23342 0.96039 0.95496 1.04535 0.84856 1.21606 0.98425 0.92697 1.01589 1.21530 0.97266 0.95788 1.01226 1.21743 0.94417 1.00166 0.99681 1.23687 1.01370 0.90036 1.06730 1.87776 1.22998 1.20956 1.74327 1.21606 0.94593 0.82550 1.00564 0.92912 0.91931 0.94044 0.94110 0.89043 0.87664 0.89322 0.90572 0.92106 0.89027 0.89911 0.91890 0.87658 0.86307 0.87530 0.91433 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.40 11.32 21.45 0.24 -53.16 16 2 C 0.02 0.98 5.30 84.65 0.45 1.43 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.54 -30.66 8.56 25.60 0.22 -30.44 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.04 2.26 2.25 -11.46 -0.03 2.23 16 10 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 11 C -0.10 -4.82 4.96 30.62 0.15 -4.67 16 12 C -0.12 -4.41 6.08 30.67 0.19 -4.22 16 13 C 0.11 3.23 6.23 86.31 0.54 3.76 16 14 N -0.60 -22.76 2.98 -818.19 -2.44 -25.21 16 15 C 0.52 19.57 6.78 87.66 0.59 20.16 16 16 O -0.58 -26.78 15.65 -3.05 -0.05 -26.83 16 17 C -0.06 -1.67 2.07 29.88 0.06 -1.61 16 18 H 0.13 2.70 6.22 -2.39 -0.01 2.68 16 19 C -0.10 -2.33 4.59 30.48 0.14 -2.19 16 20 C -0.12 -1.62 5.61 30.31 0.17 -1.45 16 21 C -0.12 -1.54 5.75 30.49 0.18 -1.37 16 22 C -0.07 -1.06 6.46 72.02 0.46 -0.59 16 23 S -0.29 -7.80 21.65 -56.49 -1.22 -9.02 16 24 C 0.13 5.90 5.65 86.36 0.49 6.39 16 25 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 26 H 0.06 3.31 6.05 -2.39 -0.01 3.30 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.11 2.44 5.52 -2.39 -0.01 2.43 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 36 H 0.06 1.02 8.06 -2.39 -0.02 1.00 16 37 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.05 2.59 7.00 -2.39 -0.02 2.57 16 Total: -1.00 -71.55 327.18 3.17 -68.38 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.00 Total: 12.05 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 3.61 Total: -12.54 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -2.20 Total: -78.36 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -7.80 SS G_CDS: -1.22 Total: -9.02 kcal Total: -71.55 3.17 -68.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.355 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds