Wall clock time and date at job start Tue Mar 31 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48497 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47212 * 300.00195 * 3 2 1 6 6 H 1.48504 * 109.47224 * 59.99840 * 3 2 1 7 7 C 1.37874 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.53079 * 109.43870 * 59.79865 * 9 7 2 11 11 C 1.53189 * 109.29353 * 181.23709 * 10 9 7 12 12 N 1.46929 * 108.89003 * 305.57936 * 11 10 9 13 13 C 1.34784 * 120.62570 * 233.55376 * 12 11 10 14 14 O 1.21279 * 120.00092 * 355.18735 * 13 12 11 15 15 C 1.50704 * 119.99523 * 175.17662 * 13 12 11 16 16 C 1.52583 * 109.22683 * 276.37189 * 15 13 12 17 17 C 1.53108 * 109.94741 * 168.96532 * 16 15 13 18 18 S 1.81744 * 108.80940 * 63.08455 * 17 16 15 19 19 C 1.81754 * 102.22368 * 306.71648 * 18 17 16 20 20 C 1.52582 * 109.22234 * 155.17925 * 15 13 12 21 21 C 1.46919 * 118.74306 * 53.54228 * 12 11 10 22 22 C 1.53038 * 109.46148 * 180.02562 * 9 7 2 23 23 H 0.97007 * 119.99943 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.45944 * 299.98059 * 9 7 2 25 25 H 1.08999 * 109.39004 * 61.35760 * 10 9 7 26 26 H 1.09001 * 109.62337 * 301.24919 * 10 9 7 27 27 H 1.09001 * 109.58671 * 185.71787 * 11 10 9 28 28 H 1.09001 * 109.58514 * 65.43352 * 11 10 9 29 29 H 1.08995 * 109.22260 * 35.77469 * 15 13 12 30 30 H 1.09007 * 109.38777 * 289.15367 * 16 15 13 31 31 H 1.09000 * 109.38854 * 48.85435 * 16 15 13 32 32 H 1.09009 * 109.60832 * 303.28031 * 17 16 15 33 33 H 1.08997 * 109.57863 * 182.87140 * 17 16 15 34 34 H 1.09003 * 109.57425 * 293.46099 * 19 18 17 35 35 H 1.08990 * 109.57706 * 173.07386 * 19 18 17 36 36 H 1.08997 * 109.38734 * 311.14399 * 20 15 13 37 37 H 1.09000 * 109.39098 * 70.84791 * 20 15 13 38 38 H 1.08999 * 109.58871 * 66.17121 * 21 12 11 39 39 H 1.08995 * 109.58878 * 186.46400 * 21 12 11 40 40 H 1.08998 * 109.49488 * 58.67420 * 22 9 7 41 41 H 1.09006 * 109.52162 * 298.60034 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 0.3669 -2.5770 -1.2478 11 6 -0.4206 -3.8909 -1.2288 12 7 0.5221 -5.0084 -1.0832 13 6 0.5115 -6.0340 -1.9577 14 8 -0.3367 -6.0843 -2.8231 15 6 1.5539 -7.1180 -1.8602 16 6 2.8197 -6.6643 -2.5814 17 6 3.9727 -7.6205 -2.2646 18 16 3.5582 -9.2704 -2.9042 19 6 1.9298 -9.5751 -2.1565 20 6 1.0072 -8.3983 -2.4847 21 6 1.4766 -4.9867 0.0335 22 6 2.2457 -3.6622 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 0.6250 -2.5571 0.8899 25 1 0.9940 -2.5415 -2.1386 26 1 -0.3274 -1.7368 -1.2573 27 1 -0.9740 -3.9987 -2.1617 28 1 -1.1161 -3.8879 -0.3896 29 1 1.7847 -7.3006 -0.8108 30 1 2.6404 -6.6562 -3.6566 31 1 3.0830 -5.6590 -2.2524 32 1 4.1183 -7.6732 -1.1856 33 1 4.8853 -7.2628 -2.7412 34 1 2.0356 -9.6658 -1.0755 35 1 1.5078 -10.4944 -2.5625 36 1 0.0115 -8.5976 -2.0884 37 1 0.9469 -8.2764 -3.5662 38 1 0.9373 -5.0715 0.9769 39 1 2.1735 -5.8189 -0.0652 40 1 2.8881 -3.5915 0.8772 41 1 2.8562 -3.6194 -0.9026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:06 Heat of formation + Delta-G solvation = -57.939894 kcal Electronic energy + Delta-G solvation = -21112.475978 eV Core-core repulsion = 18117.330515 eV Total energy + Delta-G solvation = -2995.145463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17050 -37.21782 -36.11312 -33.59351 -31.74162 -31.12551 -30.42142 -28.00021 -26.09196 -23.30481 -23.12804 -22.61228 -21.26020 -19.72038 -18.27609 -17.32103 -16.90201 -16.32555 -15.53965 -15.06449 -14.61645 -14.50254 -14.06290 -13.98975 -13.68674 -13.16680 -13.07251 -12.93038 -12.80038 -12.69131 -12.35372 -12.12130 -11.89015 -11.60569 -11.25102 -11.04707 -10.95957 -10.68618 -10.57570 -10.46557 -10.13819 -9.96578 -9.63309 -9.49525 -9.15404 -8.97708 -8.42423 -8.06329 -7.86186 -6.06826 -4.13839 1.58566 2.33730 2.86129 3.24483 3.33353 3.35624 3.36853 4.37061 4.41892 4.46269 4.64923 4.75541 4.90802 5.01221 5.18147 5.22342 5.23287 5.34667 5.44726 5.48696 5.68051 5.69495 5.77089 5.83426 5.96223 6.01355 6.09743 6.21259 6.34511 6.39755 6.54363 6.77227 6.88985 7.12731 7.27799 7.64411 7.83398 7.87435 8.01086 8.34334 8.49097 8.89816 9.51821 10.98582 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030261 B = 0.004089 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.070295 B = 6846.373623 C = 7395.005293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.598 5.598 13 C 0.516 3.484 14 O -0.552 6.552 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.075 4.075 18 S -0.274 6.274 19 C -0.078 4.078 20 C -0.103 4.103 21 C 0.103 3.897 22 C -0.123 4.123 23 H 0.260 0.740 24 H 0.027 0.973 25 H 0.037 0.963 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -15.787 -1.375 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.160 4.160 11 C -0.013 4.013 12 N -0.330 5.330 13 C 0.303 3.697 14 O -0.431 6.431 15 C -0.136 4.136 16 C -0.152 4.152 17 C -0.223 4.223 18 S -0.049 6.049 19 C -0.226 4.226 20 C -0.142 4.142 21 C -0.020 4.020 22 C -0.161 4.161 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.541 -16.335 -2.487 17.136 hybrid contribution -0.174 1.795 0.957 2.042 sum 4.367 -14.540 -1.530 15.258 Atomic orbital electron populations 1.69852 1.05882 1.26439 1.50689 1.24965 0.94853 0.99117 0.95009 0.86564 0.80125 0.83862 0.77612 1.19835 1.21024 1.21033 1.21209 0.92907 0.90541 1.50557 0.92655 1.18644 0.92570 0.91646 0.94157 1.22019 1.00049 0.94728 0.99246 1.21897 0.91517 0.86499 1.01387 1.48253 1.35971 1.21162 1.27622 1.20330 0.85320 0.82631 0.81385 1.90652 1.39044 1.77414 1.35976 1.21321 0.95430 0.94971 1.01872 1.21668 0.91908 0.99517 1.02119 1.23453 1.01508 0.93414 1.03953 1.86859 1.25030 1.24125 1.68860 1.23474 0.94156 1.01894 1.03102 1.21537 0.98465 0.91222 1.02964 1.21928 0.91548 0.99607 0.88886 1.22011 0.98941 0.94192 1.00991 0.92964 0.95512 0.94392 0.87785 0.90683 0.92358 0.88986 0.89819 0.89631 0.89558 0.87332 0.89817 0.87560 0.90319 0.89616 0.91834 0.91168 0.92034 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 11.30 55.43 0.63 -23.76 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.34 8.56 -34.44 -0.29 -13.64 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.11 2.06 -91.71 -0.19 0.92 16 10 C -0.12 -2.74 5.16 -26.59 -0.14 -2.88 16 11 C 0.11 2.12 6.41 -3.71 -0.02 2.10 16 12 N -0.60 -10.24 2.97 -172.77 -0.51 -10.75 16 13 C 0.52 8.51 6.71 -10.98 -0.07 8.44 16 14 O -0.55 -10.95 15.68 5.56 0.09 -10.86 16 15 C -0.11 -1.39 1.45 -92.20 -0.13 -1.52 16 16 C -0.11 -1.29 4.83 -26.89 -0.13 -1.42 16 17 C -0.08 -0.71 6.46 37.21 0.24 -0.47 16 18 S -0.27 -2.90 22.33 -107.50 -2.40 -5.30 16 19 C -0.08 -0.71 6.46 37.21 0.24 -0.47 16 20 C -0.10 -1.15 4.43 -26.89 -0.12 -1.27 16 21 C 0.10 1.55 6.15 -3.71 -0.02 1.53 16 22 C -0.12 -2.24 5.30 -26.61 -0.14 -2.38 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.10 2.64 6.03 -51.93 -0.31 2.33 16 27 H 0.07 1.51 7.03 -51.93 -0.37 1.15 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 0.98 6.23 -51.93 -0.32 0.65 16 30 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 31 H 0.09 1.04 7.91 -51.93 -0.41 0.63 16 32 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.84 5.28 -51.93 -0.27 0.57 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -28.79 326.56 -9.89 -38.68 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.71 Total: 1.01 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.88 Total: -9.53 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.11 Total: -34.51 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.40 Total: -5.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.79 -9.89 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.258 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds