Wall clock time and date at job start Tue Mar 31 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46680 * 249.87071 * 3 2 1 5 5 C 1.37095 * 120.00063 * 263.84041 * 4 3 2 6 6 H 1.08001 * 120.00123 * 199.83072 * 5 4 3 7 7 C 1.38954 * 119.99712 * 19.83832 * 5 4 3 8 8 N 1.31408 * 120.00042 * 21.70709 * 7 5 4 9 9 Si 1.86800 * 119.99743 * 201.70540 * 7 5 4 10 10 H 1.48504 * 109.47013 * 89.99759 * 9 7 5 11 11 H 1.48493 * 109.47381 * 209.99768 * 9 7 5 12 12 H 1.48501 * 109.47474 * 330.00083 * 9 7 5 13 13 C 1.34780 * 119.99994 * 83.84561 * 4 3 2 14 14 O 1.21293 * 119.99818 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99966 * 0.02562 * 13 4 3 16 16 H 1.09006 * 115.55458 * 34.27317 * 15 13 4 17 17 C 1.52998 * 117.49851 * 248.60504 * 15 13 4 18 18 C 1.52994 * 60.03384 * 252.47399 * 17 15 13 19 19 H 1.09002 * 117.49668 * 107.50167 * 18 17 15 20 20 C 1.50699 * 117.49884 * 252.51950 * 18 17 15 21 21 C 1.38251 * 119.99945 * 8.60819 * 20 18 17 22 22 C 1.38216 * 119.99943 * 179.97438 * 21 20 18 23 23 C 1.38258 * 119.99822 * 0.02562 * 22 21 20 24 24 C 1.38213 * 120.00266 * 359.97438 * 23 22 21 25 25 C 1.38211 * 119.99762 * 188.33578 * 20 18 17 26 26 C 1.50702 * 120.00521 * 359.97438 * 25 20 18 27 27 H 4.40635 * 5.51460 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.46959 * 129.87249 * 3 2 1 29 29 H 1.08998 * 109.47397 * 9.86829 * 3 2 1 30 30 H 0.97007 * 119.99792 * 180.02562 * 8 7 5 31 31 H 1.09002 * 117.49592 * 359.97438 * 17 15 13 32 32 H 1.08999 * 117.49899 * 144.96969 * 17 15 13 33 33 H 1.07996 * 120.00177 * 0.02562 * 21 20 18 34 34 H 1.08003 * 120.00052 * 180.02562 * 22 21 20 35 35 H 1.08007 * 119.99486 * 180.02562 * 23 22 21 36 36 H 1.07996 * 120.00028 * 180.02562 * 24 23 22 37 37 H 1.08993 * 109.47419 * 89.99455 * 26 25 20 38 38 H 1.08999 * 109.47373 * 210.00357 * 26 25 20 39 39 H 1.09008 * 109.46880 * 329.99870 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.4762 1.2969 5 6 3.4820 1.7925 1.4576 6 1 4.1260 2.0850 2.2738 7 6 3.0059 2.7502 0.5706 8 7 1.9246 2.5109 -0.1368 9 14 3.9030 4.3780 0.3837 10 1 4.9286 4.2583 -0.6836 11 1 2.9311 5.4399 0.0192 12 1 4.5627 4.7300 1.6667 13 6 3.2410 -0.3803 2.3320 14 8 3.6455 0.0133 3.4056 15 6 2.8592 -1.8273 2.1551 16 1 3.0660 -2.2515 1.1725 17 6 1.6132 -2.3242 2.8910 18 6 3.0030 -2.7505 3.3677 19 1 3.3741 -2.3112 4.2937 20 6 3.4197 -4.1758 3.1115 21 6 2.6380 -4.9921 2.3153 22 6 3.0204 -6.2992 2.0798 23 6 4.1845 -6.7906 2.6410 24 6 4.9661 -5.9746 3.4370 25 6 4.5863 -4.6654 3.6679 26 6 5.4420 -3.7737 4.5304 27 1 -1.0501 0.0001 -0.0002 28 1 3.0090 0.6596 -0.7887 29 1 3.0098 -1.0116 -0.1761 30 1 1.5925 3.1794 -0.7563 31 1 1.0699 -1.6045 3.5033 32 1 1.0000 -3.0748 2.3923 33 1 1.7289 -4.6081 1.8766 34 1 2.4099 -6.9367 1.4574 35 1 4.4835 -7.8120 2.4566 36 1 5.8755 -6.3584 3.8750 37 1 5.1251 -3.8606 5.5696 38 1 6.4856 -4.0758 4.4422 39 1 5.3342 -2.7396 4.2029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281031940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:36 Heat of formation + Delta-G solvation = 79.922899 kcal Electronic energy + Delta-G solvation = -21569.286120 eV Core-core repulsion = 18444.674885 eV Total energy + Delta-G solvation = -3124.611235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90490 -38.60782 -36.12681 -34.86854 -32.72569 -32.06950 -31.18211 -30.38668 -26.82877 -26.53120 -25.29356 -23.77610 -22.78283 -21.27021 -20.04074 -18.65361 -17.81552 -17.03404 -16.52120 -15.99276 -15.35026 -14.73770 -14.65185 -14.22753 -14.19524 -13.69041 -13.66227 -13.16021 -12.96249 -12.42304 -12.30237 -12.13020 -11.99590 -11.83726 -11.63457 -11.48939 -11.05665 -10.99276 -10.67629 -10.49587 -10.39624 -10.24576 -9.93067 -9.33203 -9.23596 -8.90086 -8.69528 -8.46222 -8.23981 -7.84975 -6.33375 -3.87111 1.40938 1.46368 3.13681 3.25431 3.29856 3.53561 3.71956 3.91869 4.08221 4.19019 4.51824 4.65712 4.91704 4.99319 5.04170 5.08666 5.13211 5.29789 5.35700 5.42474 5.50657 5.63272 5.70297 5.74785 5.79741 5.82168 5.94481 6.11821 6.17643 6.31849 6.34408 6.39609 6.45893 6.57096 6.67112 6.72346 6.85782 7.04319 7.10137 7.55901 8.06671 8.42415 8.85465 9.13054 9.35501 9.92244 10.67172 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.004459 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.997459 B = 6278.501823 C = 6960.952810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.110 4.110 3 C 0.233 3.767 4 N -0.434 5.434 5 C -0.317 4.317 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.859 5.859 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.479 3.521 14 O -0.583 6.583 15 C -0.151 4.151 16 H 0.111 0.889 17 C -0.145 4.145 18 C -0.100 4.100 19 H 0.125 0.875 20 C -0.041 4.041 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.076 4.076 26 C -0.121 4.121 27 H 0.198 0.802 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.268 0.732 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -14.707 1.044 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.111 4.111 3 C 0.110 3.890 4 N -0.152 5.152 5 C -0.444 4.444 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.268 3.732 14 O -0.467 6.467 15 C -0.173 4.173 16 H 0.129 0.871 17 C -0.183 4.183 18 C -0.119 4.119 19 H 0.143 0.857 20 C -0.041 4.041 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.076 4.076 26 C -0.178 4.178 27 H 0.215 0.785 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.484 -14.354 1.416 14.500 hybrid contribution -0.097 0.891 -0.444 1.000 sum 1.387 -13.462 0.972 13.568 Atomic orbital electron populations 1.24209 0.95299 1.06281 1.02150 1.23083 0.94249 0.95363 0.98438 1.18208 0.84463 0.97635 0.88682 1.43593 1.55646 1.08605 1.07326 1.19660 1.28278 0.81546 1.14938 0.87872 1.25305 0.94957 0.99428 0.97507 1.70097 1.17797 1.35899 1.25820 0.86020 0.79165 0.81179 0.78941 1.20318 1.21109 1.19386 1.19133 0.84024 0.85928 0.84151 1.90508 1.51391 1.78717 1.26099 1.22330 1.03672 0.94566 0.96685 0.87131 1.22972 0.89968 1.02518 1.02811 1.21083 1.00349 0.90855 0.99588 0.85737 1.19130 0.94226 0.93918 0.96865 1.21094 0.99961 0.93846 0.98705 1.21057 0.97133 0.95662 1.00509 1.21057 0.95507 0.99535 0.98506 1.20986 1.00003 0.93431 0.99547 1.19770 0.95054 0.94459 0.98322 1.20876 0.98138 1.00084 0.98658 0.78508 0.87745 0.91951 0.92148 0.88225 0.88407 0.85829 0.86363 0.86491 0.86323 0.91277 0.91871 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.37 19.25 29.55 0.57 -4.80 16 2 C -0.11 -2.44 11.28 -37.12 -0.42 -2.86 16 3 C 0.23 5.17 4.91 -6.83 -0.03 5.13 16 4 N -0.43 -10.96 2.60 -117.94 -0.31 -11.27 16 5 C -0.32 -8.70 9.28 -14.93 -0.14 -8.84 16 6 H 0.10 2.98 7.42 -52.49 -0.39 2.59 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -22.51 9.59 55.50 0.53 -21.97 16 9 Si 0.92 20.40 29.60 -169.99 -5.03 15.37 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.48 11.64 7.34 -10.99 -0.08 11.56 16 14 O -0.58 -15.98 15.93 5.55 0.09 -15.89 16 15 C -0.15 -2.86 4.80 -91.74 -0.44 -3.30 16 16 H 0.11 1.94 6.53 -51.93 -0.34 1.60 16 17 C -0.15 -2.41 9.56 -26.74 -0.26 -2.67 16 18 C -0.10 -1.68 4.66 -91.74 -0.43 -2.11 16 19 H 0.12 2.27 6.45 -51.93 -0.34 1.93 16 20 C -0.04 -0.61 5.61 -104.63 -0.59 -1.20 16 21 C -0.12 -1.56 9.30 -39.58 -0.37 -1.93 16 22 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 25 C -0.08 -1.05 5.88 -104.62 -0.62 -1.66 16 26 C -0.12 -1.56 9.33 36.01 0.34 -1.22 16 27 H 0.20 3.32 7.80 -54.09 -0.42 2.90 16 28 H 0.10 2.42 6.60 -51.93 -0.34 2.08 16 29 H 0.06 1.17 6.27 -51.93 -0.33 0.84 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.10 1.37 6.18 -51.93 -0.32 1.05 16 33 H 0.12 1.50 6.02 -52.49 -0.32 1.19 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.08 1.21 6.66 -51.92 -0.35 0.87 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -30.87 331.66 -8.25 -39.11 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.81 Total: 8.30 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -3.72 Total: -18.64 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.23 Total: -33.24 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.09 Total: -15.89 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.87 -8.25 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281031940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.037 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds