Wall clock time and date at job start Tue Mar 31 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47104 * 260.54534 * 3 2 1 5 5 C 1.37099 * 120.00108 * 264.08914 * 4 3 2 6 6 H 1.07999 * 119.99945 * 198.00681 * 5 4 3 7 7 C 1.38952 * 119.99842 * 18.01228 * 5 4 3 8 8 N 1.31410 * 119.99999 * 21.86020 * 7 5 4 9 9 Si 1.86794 * 119.99989 * 201.86709 * 7 5 4 10 10 H 1.48504 * 109.47441 * 59.99670 * 9 7 5 11 11 H 1.48495 * 109.47264 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47181 * 299.99897 * 9 7 5 13 13 C 1.34782 * 120.00099 * 84.08996 * 4 3 2 14 14 O 1.21294 * 119.99871 * 175.35433 * 13 4 3 15 15 C 1.50701 * 119.99611 * 355.35715 * 13 4 3 16 16 H 1.08994 * 109.47569 * 334.50555 * 15 13 4 17 17 C 1.53002 * 109.46421 * 214.50959 * 15 13 4 18 18 C 1.50696 * 109.47417 * 64.18766 * 17 15 13 19 19 C 1.31001 * 120.00456 * 125.56214 * 18 17 15 20 20 C 1.50699 * 109.47028 * 94.51356 * 15 13 4 21 21 C 1.38232 * 120.00385 * 59.72495 * 20 15 13 22 22 C 1.38236 * 119.99848 * 179.78980 * 21 20 15 23 23 C 1.38232 * 120.00085 * 0.43331 * 22 21 20 24 24 C 1.38234 * 120.00034 * 359.81821 * 23 22 21 25 25 C 1.38238 * 120.00121 * 359.97438 * 24 23 22 26 26 H 4.40636 * 5.51461 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.47073 * 140.54469 * 3 2 1 28 28 H 1.09001 * 109.46787 * 20.54354 * 3 2 1 29 29 H 0.97001 * 120.00132 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47147 * 304.18036 * 17 15 13 31 31 H 1.09007 * 109.46801 * 184.18942 * 17 15 13 32 32 H 1.07999 * 119.99775 * 305.83508 * 18 17 15 33 33 H 1.07991 * 120.00474 * 180.27488 * 19 18 17 34 34 H 1.08003 * 119.99531 * 0.27826 * 19 18 17 35 35 H 1.07994 * 119.99867 * 359.97438 * 21 20 15 36 36 H 1.08001 * 119.99892 * 180.27147 * 22 21 20 37 37 H 1.08004 * 120.00116 * 179.83322 * 23 22 21 38 38 H 1.08004 * 119.99965 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.00069 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.2278 1.3625 5 6 3.4774 1.4923 1.7658 6 1 4.0975 1.6309 2.6391 7 6 3.0273 2.5956 1.0510 8 7 1.9653 2.4930 0.2840 9 14 3.9321 4.2247 1.1803 10 1 5.3346 4.0496 0.7244 11 1 3.2572 5.2349 0.3265 12 1 3.9244 4.6846 2.5923 13 6 3.2460 -0.8065 2.2195 14 8 3.7288 -0.6338 3.3186 15 6 2.7711 -2.1774 1.8118 16 1 1.9976 -2.0824 1.0498 17 6 2.1988 -2.9023 3.0317 18 6 0.9782 -2.1690 3.5250 19 6 -0.1568 -2.8075 3.6672 20 6 3.9292 -2.9657 1.2567 21 6 5.0385 -3.2118 2.0439 22 6 6.0990 -3.9387 1.5359 23 6 6.0540 -4.4117 0.2379 24 6 4.9469 -4.1611 -0.5511 25 6 3.8846 -3.4380 -0.0418 26 1 -1.0501 0.0002 -0.0001 27 1 3.0089 0.7943 -0.6530 28 1 3.0096 -0.9615 -0.3606 29 1 1.6509 3.2633 -0.2147 30 1 2.9491 -2.9318 3.8219 31 1 1.9238 -3.9198 2.7537 32 1 1.0380 -1.1159 3.7571 33 1 -1.0326 -2.2810 4.0164 34 1 -0.2165 -3.8607 3.4352 35 1 5.0754 -2.8388 3.0567 36 1 6.9638 -4.1347 2.1524 37 1 6.8837 -4.9773 -0.1599 38 1 4.9119 -4.5304 -1.5655 39 1 3.0195 -3.2426 -0.6581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281485480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:06 Heat of formation + Delta-G solvation = 73.525683 kcal Electronic energy + Delta-G solvation = -22271.163621 eV Core-core repulsion = 19146.274982 eV Total energy + Delta-G solvation = -3124.888639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.77541 -38.11734 -35.57183 -34.63205 -32.43150 -31.81277 -31.15813 -30.62560 -28.33916 -26.49213 -25.16635 -23.57229 -22.29675 -21.30520 -19.64242 -18.41344 -17.84501 -16.70891 -16.63142 -16.18288 -15.08279 -14.85999 -14.66930 -14.23948 -14.09646 -14.00253 -13.30032 -13.12627 -13.05378 -12.45594 -12.33518 -12.16840 -11.98615 -11.71148 -11.45439 -11.15251 -10.97782 -10.90429 -10.68790 -10.54554 -10.33333 -10.29028 -9.37033 -9.24589 -8.96728 -8.89789 -8.72436 -8.63748 -8.10640 -7.84221 -6.33334 -3.85130 1.59266 1.66990 2.70839 3.17093 3.24724 3.28349 3.68533 3.87264 4.03188 4.08419 4.19246 4.86855 4.96843 5.12278 5.16867 5.20851 5.36341 5.45361 5.48324 5.55175 5.66925 5.77130 5.78427 5.87351 6.01238 6.11791 6.21194 6.32370 6.34855 6.41460 6.46679 6.70731 6.73738 6.76755 6.95397 7.02669 7.07777 7.20251 7.26665 7.56337 8.05938 8.42736 8.81258 9.13619 9.36597 9.91896 10.67279 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.006713 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.081742 B = 4169.705351 C = 4888.727623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.115 4.115 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.317 4.317 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.466 3.534 14 O -0.579 6.579 15 C -0.064 4.064 16 H 0.090 0.910 17 C -0.069 4.069 18 C -0.128 4.128 19 C -0.213 4.213 20 C -0.063 4.063 21 C -0.101 4.101 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.117 4.117 26 H 0.198 0.802 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.268 0.732 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 -11.447 -2.764 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.116 4.116 3 C 0.108 3.892 4 N -0.153 5.153 5 C -0.444 4.444 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.745 3.255 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.254 3.746 14 O -0.463 6.463 15 C -0.086 4.086 16 H 0.109 0.891 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.250 4.250 20 C -0.063 4.063 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.135 4.135 26 H 0.216 0.784 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.345 -11.186 -2.354 11.510 hybrid contribution -0.070 1.123 -0.194 1.141 sum 1.274 -10.063 -2.547 10.459 Atomic orbital electron populations 1.24246 0.95325 1.06176 1.01859 1.23145 0.94302 0.95530 0.98635 1.18287 0.84264 1.00102 0.86572 1.43651 1.55742 1.07071 1.08869 1.19609 1.29951 0.80659 1.14214 0.87858 1.25265 0.95100 0.99448 0.97369 1.70087 1.18961 1.31575 1.29123 0.86119 0.79708 0.81163 0.78486 1.19914 1.21043 1.19860 1.19721 0.84477 0.85359 0.85035 1.90499 1.49195 1.84587 1.22047 1.20333 0.95608 0.93969 0.98708 0.89143 1.20586 0.96370 0.97047 0.96597 1.23035 0.94465 1.00360 0.96697 1.23669 0.97195 0.99922 1.04219 1.19684 0.95461 0.97166 0.94013 1.21195 0.92839 0.97161 1.00727 1.21114 0.98463 0.98630 0.95774 1.21068 0.98190 1.00954 0.94529 1.21040 0.94036 0.99482 0.99527 1.21092 0.98953 0.98516 0.94962 0.78444 0.87488 0.92036 0.92105 0.89784 0.91627 0.87041 0.88938 0.89123 0.85260 0.86384 0.86597 0.86365 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.28 19.25 29.55 0.57 -4.71 16 2 C -0.11 -2.54 10.30 -37.12 -0.38 -2.92 16 3 C 0.23 5.15 4.78 -6.83 -0.03 5.12 16 4 N -0.44 -10.91 2.60 -117.93 -0.31 -11.22 16 5 C -0.32 -8.67 9.33 -14.93 -0.14 -8.81 16 6 H 0.10 2.98 7.37 -52.49 -0.39 2.59 16 7 C 0.03 0.85 4.85 -17.47 -0.08 0.76 16 8 N -0.86 -22.43 9.53 55.50 0.53 -21.91 16 9 Si 0.92 20.49 29.61 -169.99 -5.03 15.46 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.47 11.01 5.41 -10.98 -0.06 10.95 16 14 O -0.58 -15.31 15.28 5.55 0.08 -15.22 16 15 C -0.06 -1.22 1.57 -92.92 -0.15 -1.36 16 16 H 0.09 1.70 5.48 -51.93 -0.28 1.42 16 17 C -0.07 -1.18 4.64 -27.88 -0.13 -1.31 16 18 C -0.13 -2.28 9.06 -36.03 -0.33 -2.61 16 19 C -0.21 -3.21 14.32 29.01 0.42 -2.80 16 20 C -0.06 -1.06 4.56 -104.62 -0.48 -1.54 16 21 C -0.10 -1.69 8.84 -39.58 -0.35 -2.04 16 22 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 23 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 24 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 25 C -0.12 -1.74 8.78 -39.58 -0.35 -2.09 16 26 H 0.20 3.33 7.80 -54.09 -0.42 2.91 16 27 H 0.11 2.53 6.49 -51.93 -0.34 2.19 16 28 H 0.06 1.19 5.72 -51.93 -0.30 0.89 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 31 H 0.07 0.97 7.80 -51.92 -0.40 0.57 16 32 H 0.11 2.34 7.73 -52.49 -0.41 1.94 16 33 H 0.09 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.09 1.19 7.84 -52.48 -0.41 0.78 16 35 H 0.13 2.30 7.15 -52.49 -0.38 1.93 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 38 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.12 1.63 7.76 -52.49 -0.41 1.22 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -29.97 332.97 -7.32 -37.29 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.93 Total: 10.09 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.68 Total: -19.51 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.22 Total: -33.12 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.97 -7.32 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281485480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.815 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds