Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46852 * 2 1 4 4 C 1.52996 * 109.47204 * 240.00176 * 2 1 3 5 5 O 1.42905 * 109.47105 * 59.99837 * 4 2 1 6 6 C 1.53001 * 109.47068 * 119.99975 * 2 1 3 7 7 H 1.09001 * 109.46926 * 295.40755 * 6 2 1 8 8 N 1.46898 * 109.46847 * 175.41056 * 6 2 1 9 9 C 1.46893 * 111.00291 * 100.10163 * 8 6 2 10 10 C 1.53003 * 109.47125 * 179.67272 * 9 8 6 11 11 C 1.50704 * 109.46743 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00365 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99468 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00391 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99617 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47543 * 59.99962 * 15 13 11 17 17 H 1.48508 * 109.47166 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47234 * 299.99796 * 15 13 11 19 19 C 1.50696 * 109.46927 * 55.40754 * 6 2 1 20 20 C 1.33394 * 125.20414 * 259.99822 * 19 6 2 21 21 C 1.38424 * 114.92085 * 179.97438 * 20 19 6 22 22 C 1.33391 * 114.92122 * 359.97438 * 21 20 19 23 23 S 1.75886 * 125.20270 * 79.69709 * 19 6 2 24 24 H 1.08996 * 109.47807 * 299.99528 * 1 2 3 25 25 H 1.09001 * 109.47353 * 60.00033 * 1 2 3 26 26 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47100 * 176.98312 * 3 2 1 28 28 H 1.08991 * 109.47240 * 296.98820 * 3 2 1 29 29 H 1.09002 * 109.46871 * 56.98723 * 3 2 1 30 30 H 1.09001 * 109.47117 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47255 * 299.99733 * 4 2 1 32 32 H 0.96697 * 113.99395 * 179.97438 * 5 4 2 33 33 H 1.00905 * 110.99357 * 224.05313 * 8 6 2 34 34 H 1.09006 * 109.47339 * 299.67212 * 9 8 6 35 35 H 1.08999 * 109.47227 * 59.67178 * 9 8 6 36 36 H 1.08994 * 109.46883 * 299.99779 * 10 9 8 37 37 H 1.08999 * 109.47145 * 59.99855 * 10 9 8 38 38 H 0.96994 * 120.00065 * 180.02562 * 14 13 11 39 39 H 1.08001 * 122.53748 * 359.97438 * 20 19 6 40 40 H 1.07996 * 122.53809 * 180.02562 * 21 20 19 41 41 H 1.07996 * 125.20121 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5636 -0.0475 -2.4160 6 6 2.0400 -0.7212 1.2493 7 1 1.7454 -0.1621 2.1373 8 7 3.5048 -0.8179 1.1951 9 6 4.1319 0.2162 2.0288 10 6 5.6538 0.0785 1.9534 11 6 6.2971 1.1399 2.8082 12 1 5.6820 1.8421 3.3513 13 6 7.6710 1.2145 2.8970 14 7 8.4201 0.3591 2.2360 15 14 8.4684 2.5297 3.9571 16 1 8.0263 2.3657 5.3653 17 1 9.9456 2.3962 3.8839 18 1 8.0673 3.8723 3.4655 19 6 1.4469 -2.1054 1.3074 20 6 0.4044 -2.4644 2.0582 21 6 0.0358 -3.7940 1.9469 22 6 0.7785 -4.5146 1.1052 23 16 2.0187 -3.4928 0.3900 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1285 1.4431 0.0541 28 1 1.7214 1.9405 -0.9157 29 1 1.6331 1.9717 0.8618 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2493 32 1 1.8493 -0.4508 -3.2471 33 1 3.8165 -1.7387 1.4656 34 1 3.8379 1.2018 1.6676 35 1 3.8069 0.0962 3.0623 36 1 5.9478 -0.9069 2.3145 37 1 5.9787 0.1986 0.9199 38 1 9.3866 0.4113 2.2988 39 1 -0.1128 -1.7702 2.7040 40 1 -0.7911 -4.2157 2.4989 41 1 0.6379 -5.5642 0.8932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289459824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -29.535484 kcal Electronic energy + Delta-G solvation = -20754.411763 eV Core-core repulsion = 17760.498008 eV Total energy + Delta-G solvation = -2993.913755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.33739 -37.29188 -35.93124 -33.98826 -32.54455 -30.53186 -28.66636 -26.78009 -26.15004 -25.22706 -23.63944 -22.63919 -20.70066 -19.18004 -18.76835 -17.35934 -16.95254 -16.25009 -15.60670 -15.17589 -14.68042 -14.49341 -14.39052 -13.93130 -13.45844 -13.11876 -12.68182 -12.67261 -12.51038 -12.28995 -12.21346 -11.91489 -11.78777 -11.64619 -11.31087 -10.97752 -10.84861 -10.72916 -10.58464 -10.47132 -10.26016 -9.93977 -9.68949 -9.37335 -9.17871 -8.61086 -8.36280 -8.34556 -7.90910 -5.99991 -4.02639 0.98950 1.63148 2.04277 2.72770 3.33457 3.37914 3.40204 4.36979 4.43455 4.58016 4.71858 5.01685 5.14931 5.31813 5.34401 5.36142 5.46094 5.51692 5.65438 5.75089 5.82235 5.92237 6.06249 6.09777 6.19096 6.21028 6.26726 6.29410 6.36709 6.39167 6.44057 6.55837 6.75623 6.99477 7.39094 7.69285 7.76759 7.82238 7.89928 8.05806 8.42173 9.04172 9.61210 11.11337 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.004509 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.456870 B = 6207.894159 C = 6864.132095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 C -0.139 4.139 4 C 0.084 3.916 5 O -0.575 6.575 6 C 0.161 3.839 7 H 0.071 0.929 8 N -0.683 5.683 9 C 0.060 3.940 10 C 0.027 3.973 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.173 4.173 20 C -0.141 4.141 21 C -0.133 4.133 22 C -0.232 4.232 23 S 0.128 5.872 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.372 0.628 33 H 0.339 0.661 34 H 0.069 0.931 35 H 0.017 0.983 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 -7.471 -5.169 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 C -0.196 4.196 4 C 0.006 3.994 5 O -0.379 6.379 6 C 0.049 3.951 7 H 0.089 0.911 8 N -0.315 5.315 9 C -0.068 4.068 10 C -0.011 4.011 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.291 4.291 20 C -0.172 4.172 21 C -0.164 4.164 22 C -0.367 4.367 23 S 0.392 5.608 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.218 0.782 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.152 -7.021 -6.353 18.722 hybrid contribution -0.566 0.027 2.221 2.292 sum -16.717 -6.994 -4.131 18.586 Atomic orbital electron populations 1.21844 0.94641 1.01545 1.01561 1.20430 0.94857 0.96142 0.92743 1.21874 1.02791 0.93917 1.01061 1.22322 0.99008 0.93799 0.84265 1.86415 1.77669 1.57770 1.16083 1.20195 0.89161 0.88264 0.97479 0.91091 1.60790 1.02836 1.08697 1.59133 1.22414 0.98313 0.93750 0.92289 1.19051 0.87330 0.96890 0.97794 1.21119 0.91450 1.15112 1.28390 0.92826 1.24985 0.97449 0.96003 0.95790 1.69959 1.04929 1.36304 1.42018 0.86663 0.78180 0.82269 0.80898 1.20326 1.21278 1.20203 1.24914 1.01832 0.99528 1.02822 1.20095 0.98391 0.96451 1.02263 1.20103 1.01775 0.93724 1.00812 1.25736 1.02188 1.03821 1.04988 1.84475 1.33119 0.99749 1.43484 0.93242 0.91956 0.92901 0.90607 0.92285 0.93549 0.91544 0.94020 0.78173 0.84255 0.91295 0.96500 0.96893 0.95633 0.92943 0.84597 0.84714 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.89 37.16 0.29 -1.45 16 2 C -0.04 -0.56 0.45 -154.51 -0.07 -0.63 16 3 C -0.14 -2.10 7.54 37.16 0.28 -1.82 16 4 C 0.08 1.16 5.31 37.16 0.20 1.35 16 5 O -0.57 -7.48 12.26 -35.23 -0.43 -7.92 16 6 C 0.16 2.34 1.95 -68.87 -0.13 2.20 16 7 H 0.07 1.06 7.59 -51.93 -0.39 0.67 16 8 N -0.68 -11.69 5.01 -107.95 -0.54 -12.23 16 9 C 0.06 1.22 4.98 -3.83 -0.02 1.21 16 10 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 11 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.17 -2.26 3.60 -36.00 -0.13 -2.39 16 20 C -0.14 -1.67 9.23 -41.21 -0.38 -2.05 16 21 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 22 C -0.23 -2.45 11.23 29.04 0.33 -2.12 16 23 S 0.13 1.55 20.17 -107.50 -2.17 -0.62 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 26 H 0.05 0.65 6.61 -51.93 -0.34 0.31 16 27 H 0.08 1.31 5.86 -51.93 -0.30 1.00 16 28 H 0.06 0.88 7.59 -51.93 -0.39 0.49 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.03 7.48 -51.93 -0.39 0.64 16 31 H 0.04 0.54 5.49 -51.93 -0.29 0.26 16 32 H 0.37 3.28 9.12 45.56 0.42 3.70 16 33 H 0.34 5.86 7.55 -39.29 -0.30 5.56 16 34 H 0.07 1.40 5.69 -51.93 -0.30 1.10 16 35 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -30.43 335.29 -8.59 -39.02 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.61 Total: 6.50 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -0.61 Total: -20.39 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.20 Total: -38.27 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.43 Total: -7.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.17 Total: -0.62 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.43 -8.59 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289459824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.488 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds