Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46857 * 2 1 4 4 C 1.38408 * 119.82635 * 90.00135 * 3 2 1 5 5 C 1.37881 * 120.17587 * 179.97438 * 4 3 2 6 6 C 1.39871 * 119.82373 * 0.02682 * 5 4 3 7 7 C 1.43198 * 120.17378 * 179.97438 * 6 5 4 8 8 C 6.88318 * 109.45918 * 359.97438 * 2 1 3 9 9 C 8.31516 * 109.45757 * 359.97438 * 2 1 3 10 10 O 1.21758 * 119.99966 * 233.42289 * 9 8 7 11 11 N 1.34772 * 120.00377 * 53.42622 * 9 8 7 12 12 C 1.36705 * 120.00623 * 174.46897 * 11 9 8 13 13 H 1.07995 * 120.00201 * 25.38702 * 12 11 9 14 14 C 1.39126 * 120.00358 * 205.39344 * 12 11 9 15 15 N 1.31319 * 119.99800 * 9.89315 * 14 12 11 16 16 Si 1.86804 * 120.00333 * 189.89634 * 14 12 11 17 17 H 1.48499 * 109.47137 * 89.99406 * 16 14 12 18 18 H 1.48498 * 109.47119 * 209.99718 * 16 14 12 19 19 H 1.48509 * 109.46615 * 329.99473 * 16 14 12 20 20 C 1.46512 * 119.99752 * 354.46461 * 11 9 8 21 21 C 1.53003 * 117.49632 * 310.93537 * 20 11 9 22 22 C 1.52993 * 117.49610 * 242.31118 * 20 11 9 23 23 C 1.39886 * 119.65403 * 0.24980 * 6 5 4 24 24 C 1.37884 * 119.81822 * 359.47030 * 23 6 5 25 25 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46685 * 300.00015 * 1 2 3 27 27 H 1.09000 * 109.47342 * 59.99442 * 1 2 3 28 28 H 1.09005 * 109.46799 * 240.00505 * 2 1 3 29 29 H 1.08996 * 109.47036 * 119.99888 * 2 1 3 30 30 H 1.08004 * 119.91091 * 0.02989 * 4 3 2 31 31 H 1.07997 * 120.08590 * 180.02562 * 5 4 3 32 32 H 0.97006 * 120.00134 * 180.02562 * 15 14 12 33 33 H 1.08996 * 115.54376 * 96.63806 * 20 11 9 34 34 H 1.08994 * 117.49619 * 359.97438 * 21 20 11 35 35 H 1.09000 * 117.49502 * 145.01971 * 21 20 11 36 36 H 1.09002 * 117.49637 * 214.97297 * 22 20 11 37 37 H 1.08994 * 117.50450 * 359.97438 * 22 20 11 38 38 H 1.07990 * 120.09135 * 179.72308 * 23 6 5 39 39 H 1.07994 * 119.91144 * 180.27561 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0699 1.2007 5 6 2.7218 3.3697 1.2091 6 6 2.9561 4.0325 0.0000 7 6 3.4333 5.3826 -0.0001 8 6 3.8231 6.4900 -0.0029 9 6 4.2999 7.8403 -0.0035 10 8 3.9102 8.6239 0.8430 11 7 5.1799 8.2438 -0.9411 12 6 5.5487 9.5583 -1.0119 13 1 5.4914 10.1833 -0.1331 14 6 5.9977 10.0910 -2.2162 15 7 5.8860 9.3950 -3.3242 16 14 6.7594 11.7961 -2.2571 17 1 8.2251 11.6888 -2.0440 18 1 6.4957 12.4246 -3.5764 19 1 6.1628 12.6306 -1.1832 20 6 5.7415 7.2736 -1.8845 21 6 6.3122 5.9764 -1.3078 22 6 7.2549 7.0516 -1.8522 23 6 2.7162 3.3716 -1.2094 24 6 2.2617 2.0698 -1.2009 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.0808 1.5565 2.1336 31 1 2.9008 3.8746 2.1469 32 1 6.1994 9.7662 -4.1638 33 1 5.2451 7.2186 -2.8533 34 1 6.2702 5.8451 -0.2266 35 1 6.1913 5.0676 -1.8973 36 1 7.7542 6.8500 -2.7999 37 1 7.8328 7.6275 -1.1295 38 1 2.8904 3.8782 -2.1471 39 1 2.0802 1.5567 -2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292788629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = 67.387074 kcal Electronic energy + Delta-G solvation = -20702.606992 eV Core-core repulsion = 17577.452163 eV Total energy + Delta-G solvation = -3125.154829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.39372 -38.80715 -36.06492 -34.86727 -33.32301 -32.36921 -31.16752 -30.99154 -29.16028 -25.72661 -24.30938 -22.63462 -22.43351 -21.48050 -21.35309 -20.53453 -17.84155 -17.05039 -16.36418 -15.57721 -15.52991 -15.30257 -14.62601 -14.14828 -14.05469 -13.85600 -13.60931 -13.38279 -13.28551 -13.21944 -12.57839 -12.37947 -12.09109 -11.52558 -11.37215 -11.19497 -11.09098 -10.99029 -10.88402 -10.64254 -10.45134 -10.38946 -10.07388 -9.74572 -9.49303 -9.01405 -8.96854 -8.75853 -8.18256 -7.83126 -6.43712 -4.00360 0.93823 1.40926 2.57043 3.08164 3.16516 3.20556 3.26733 3.85855 4.02674 4.34503 4.55855 4.62010 4.67808 4.72290 4.88662 4.98483 5.08283 5.13987 5.18176 5.34515 5.39708 5.51267 5.63712 5.69017 5.75340 5.78885 5.90431 5.97183 6.04815 6.08352 6.20490 6.27400 6.46824 6.54601 6.58635 6.61733 6.86391 6.95811 7.19314 7.44160 7.88793 8.01480 8.35857 9.02225 9.23482 9.82160 10.59333 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034535 B = 0.003307 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.573573 B = 8464.567253 C = 8797.031208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.118 4.118 5 C -0.096 4.096 6 C 0.030 3.970 7 C -0.137 4.137 8 C -0.115 4.115 9 C 0.538 3.462 10 O -0.575 6.575 11 N -0.394 5.394 12 C -0.309 4.309 13 H 0.105 0.895 14 C 0.041 3.959 15 N -0.862 5.862 16 Si 0.930 3.070 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.125 3.875 21 C -0.210 4.210 22 C -0.159 4.159 23 C -0.093 4.093 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.271 0.729 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -17.257 1.183 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.136 4.136 5 C -0.114 4.114 6 C 0.030 3.970 7 C -0.141 4.141 8 C -0.118 4.118 9 C 0.328 3.672 10 O -0.461 6.461 11 N -0.109 5.109 12 C -0.436 4.436 13 H 0.122 0.878 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.756 3.244 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.191 1.191 20 C 0.020 3.980 21 C -0.249 4.249 22 C -0.196 4.196 23 C -0.111 4.111 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.283 -16.784 1.350 17.375 hybrid contribution 0.489 0.803 -0.277 0.980 sum -3.794 -15.981 1.073 16.461 Atomic orbital electron populations 1.21759 0.94757 1.01558 1.02400 1.20546 0.96150 0.92687 1.02786 1.19992 0.99013 0.96225 0.93190 1.20887 1.00581 0.94564 0.97572 1.21311 0.98257 0.94500 0.97322 1.16018 0.99515 0.87851 0.93599 1.19017 1.00803 0.91702 1.02564 1.21516 0.98583 0.93025 0.98720 1.14664 0.83112 0.82798 0.86597 1.90718 1.61597 1.54077 1.39757 1.42958 1.34033 1.07627 1.26330 1.19677 1.42178 0.84863 0.96899 0.87751 1.25415 0.96992 0.99760 0.94311 1.69849 1.43149 1.38184 0.98672 0.85866 0.79233 0.81381 0.77948 1.20139 1.20727 1.19108 1.21397 0.94495 0.88183 0.93924 1.23437 1.07040 0.93755 1.00618 1.22853 0.94121 1.00935 1.01740 1.21324 0.97989 0.94395 0.97363 1.20906 1.00517 0.94542 0.97577 0.92523 0.92498 0.92458 0.91041 0.91084 0.85869 0.85535 0.91860 0.86010 0.89668 0.89211 0.89380 0.89273 0.85339 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.88 5.14 -104.49 -0.54 -1.41 16 4 C -0.12 -1.31 9.68 -39.65 -0.38 -1.69 16 5 C -0.10 -1.30 9.77 -39.10 -0.38 -1.68 16 6 C 0.03 0.48 5.75 -106.74 -0.61 -0.14 16 7 C -0.14 -2.68 13.00 -38.84 -0.50 -3.19 16 8 C -0.12 -2.62 10.56 -38.84 -0.41 -3.03 16 9 C 0.54 14.34 7.31 -14.34 -0.10 14.23 16 10 O -0.58 -17.07 16.80 5.14 0.09 -16.98 16 11 N -0.39 -10.36 2.91 -110.42 -0.32 -10.69 16 12 C -0.31 -8.51 9.12 -15.05 -0.14 -8.64 16 13 H 0.10 2.99 7.41 -52.49 -0.39 2.60 16 14 C 0.04 1.06 5.18 -17.44 -0.09 0.97 16 15 N -0.86 -22.09 10.81 55.50 0.60 -21.49 16 16 Si 0.93 20.19 29.57 -169.99 -5.03 15.16 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.12 2.86 3.62 -67.93 -0.25 2.61 16 21 C -0.21 -4.04 8.65 -26.73 -0.23 -4.27 16 22 C -0.16 -3.23 9.92 -26.73 -0.27 -3.50 16 23 C -0.09 -1.26 9.77 -39.09 -0.38 -1.64 16 24 C -0.12 -1.31 9.68 -39.64 -0.38 -1.69 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.12 2.92 7.38 -51.93 -0.38 2.54 16 34 H 0.08 1.70 7.31 -51.93 -0.38 1.32 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -30.35 342.15 -9.33 -39.68 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.35 Total: 3.74 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -4.47 Total: -14.57 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.28 Total: -32.18 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.09 Total: -16.98 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.35 -9.33 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.065 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds