Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47015 * 275.41884 * 3 2 1 5 5 H 1.48504 * 109.46777 * 35.41658 * 3 2 1 6 6 H 1.48492 * 109.47192 * 155.41213 * 3 2 1 7 7 C 1.39933 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99610 * 341.72721 * 7 2 1 9 9 C 1.41409 * 120.00026 * 161.72903 * 7 2 1 10 10 C 1.40785 * 120.20880 * 330.19306 * 9 7 2 11 11 C 1.37641 * 119.89385 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32575 * 359.74605 * 11 10 9 13 13 C 1.39299 * 120.42114 * 0.50757 * 12 11 10 14 14 N 1.39689 * 119.94981 * 179.76435 * 13 12 11 15 15 C 1.46501 * 119.99880 * 359.73012 * 14 13 12 16 16 C 1.50695 * 109.46830 * 179.97438 * 15 14 13 17 17 C 1.38240 * 119.99869 * 90.00089 * 16 15 14 18 18 C 1.38244 * 119.99639 * 180.27340 * 17 16 15 19 19 C 1.38230 * 119.99937 * 359.49343 * 18 17 16 20 20 C 1.50707 * 119.99956 * 180.23426 * 19 18 17 21 21 O 1.42899 * 109.46871 * 270.27604 * 20 19 18 22 22 C 1.38231 * 120.00437 * 0.50668 * 19 18 17 23 23 C 1.38230 * 120.00391 * 270.01936 * 16 15 14 24 24 C 1.38314 * 120.09743 * 359.49286 * 13 12 11 25 25 H 0.96994 * 120.00083 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.05003 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.83681 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.78747 * 180.27981 * 12 11 10 29 29 H 0.96998 * 119.99890 * 179.72370 * 14 13 12 30 30 H 1.09003 * 109.47308 * 60.00019 * 15 14 13 31 31 H 1.08997 * 109.47344 * 300.00043 * 15 14 13 32 32 H 1.07994 * 120.00280 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.99353 * 179.72375 * 18 17 16 34 34 H 1.09007 * 109.46836 * 30.27311 * 20 19 18 35 35 H 1.09002 * 109.47054 * 150.27182 * 20 19 18 36 36 H 0.96701 * 113.99597 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.00537 * 179.72606 * 22 19 18 38 38 H 1.08003 * 119.99745 * 359.97438 * 23 16 15 39 39 H 1.07998 * 120.16013 * 180.23011 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5017 2.6169 0.8114 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3687 -1.2425 -0.3845 10 6 3.8630 -0.3100 -1.3162 11 6 5.1884 -0.3461 -1.6857 12 6 6.0407 -1.2927 -1.1413 13 6 5.5646 -2.2250 -0.2224 14 7 6.4317 -3.1784 0.3167 15 6 7.8393 -3.2008 -0.0890 16 6 8.5522 -4.3152 0.6326 17 6 8.6099 -5.5769 0.0706 18 6 9.2591 -6.6006 0.7353 19 6 9.8596 -6.3599 1.9569 20 6 10.5718 -7.4746 2.6790 21 8 9.6488 -8.1569 3.5302 22 6 9.8019 -5.0983 2.5189 23 6 9.1483 -4.0760 1.8567 24 6 4.2360 -2.2047 0.1614 25 1 -0.4850 0.8400 0.0004 26 1 3.2031 0.4320 -1.7408 27 1 5.5667 0.3700 -2.4002 28 1 7.0801 -1.3102 -1.4341 29 1 6.1019 -3.8254 0.9597 30 1 8.3054 -2.2484 0.1633 31 1 7.9048 -3.3637 -1.1647 32 1 8.1437 -5.7641 -0.8853 33 1 9.3003 -7.5873 0.2983 34 1 10.9815 -8.1754 1.9515 35 1 11.3814 -7.0595 3.2795 36 1 10.0395 -8.8883 4.0277 37 1 10.2673 -4.9114 3.4754 38 1 9.1033 -3.0902 2.2957 39 1 3.8666 -2.9247 0.8766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313435235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -29.167777 kcal Electronic energy + Delta-G solvation = -20343.820858 eV Core-core repulsion = 17214.479097 eV Total energy + Delta-G solvation = -3129.341762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65071 -39.72555 -37.76794 -36.63959 -35.14948 -33.14172 -32.03845 -31.91779 -30.20561 -27.66430 -27.00236 -24.96028 -23.71478 -22.85517 -22.25273 -21.47537 -19.33151 -18.37091 -17.81982 -17.57807 -16.77524 -16.70111 -16.38075 -16.25273 -15.77665 -15.06853 -15.01658 -14.56591 -14.50570 -14.35210 -14.18576 -14.15461 -13.66670 -13.50218 -13.17034 -12.98515 -12.63875 -12.58901 -12.26116 -11.98864 -11.84936 -11.61817 -11.36612 -11.07809 -10.97891 -10.57298 -9.88892 -9.76816 -9.46982 -8.86739 -8.09114 -6.49352 0.16858 0.43715 0.86793 1.10366 1.30144 1.45022 1.54086 2.18071 2.48573 2.67958 3.02402 3.55522 3.61932 3.76883 3.83043 4.05580 4.16607 4.20528 4.37585 4.46612 4.55971 4.58297 4.59958 4.67717 4.74356 4.77745 4.99747 5.00984 5.09478 5.11283 5.18873 5.37260 5.55269 5.58689 5.63123 5.76714 5.87735 5.99396 6.00214 6.10722 6.39306 6.70318 6.82996 6.88199 6.90991 7.06490 8.22439 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.002970 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.592333 B = 9425.943644 C = 9786.452483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.047 3.953 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.490 4.490 8 H 0.050 0.950 9 C 0.107 3.893 10 C -0.293 4.293 11 C -0.047 4.047 12 C -0.289 4.289 13 C 0.244 3.756 14 N -0.747 5.747 15 C 0.174 3.826 16 C -0.102 4.102 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.103 4.103 20 C 0.116 3.884 21 O -0.592 6.592 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.298 4.298 25 H 0.293 0.707 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.395 0.605 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.024 -10.733 3.419 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.166 4.166 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.104 3.896 10 C -0.314 4.314 11 C -0.065 4.065 12 C -0.312 4.312 13 C 0.141 3.859 14 N -0.378 5.378 15 C 0.050 3.950 16 C -0.103 4.103 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.103 4.103 20 C 0.039 3.961 21 O -0.402 6.402 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.322 4.322 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 23.545 -10.185 3.096 25.840 hybrid contribution -0.386 -0.143 0.520 0.664 sum 23.159 -10.328 3.616 25.614 Atomic orbital electron populations 1.69738 1.09212 1.31342 1.37913 1.26840 0.95311 1.04322 0.90151 0.85389 0.79431 0.76187 0.79364 1.18307 1.20688 1.17829 1.19449 0.94768 0.95439 1.42376 0.93181 1.17589 0.91984 0.91026 0.89003 1.20970 0.97151 1.06344 1.06921 1.20775 0.92402 0.96576 0.96790 1.20348 1.00037 1.02704 1.08100 1.17617 0.88680 0.88382 0.91185 1.44620 1.07746 1.35593 1.49869 1.20138 0.80411 0.96335 0.98105 1.19952 0.99330 0.95029 0.95976 1.21271 0.98835 0.92317 1.00649 1.21286 0.96872 0.99528 0.95054 1.20038 0.99900 0.95052 0.95329 1.21069 0.90182 0.91968 0.92843 1.86534 1.40383 1.51623 1.61640 1.21286 0.99017 0.92473 0.99964 1.21268 0.97363 1.00110 0.94344 1.20503 0.92852 1.08300 1.10555 0.89716 0.88951 0.85413 0.85530 0.77151 0.91493 0.91445 0.85114 0.84296 0.90992 0.90991 0.74961 0.84289 0.85128 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.10 13.93 21.82 0.30 -48.80 16 2 C 0.05 2.68 5.40 85.25 0.46 3.14 16 3 Si 0.97 45.23 24.52 68.60 1.68 46.91 16 4 H -0.26 -11.28 6.71 99.48 0.67 -10.61 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.25 -12.12 6.86 99.48 0.68 -11.44 16 7 C -0.49 -29.20 9.57 23.46 0.22 -28.98 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 C 0.11 5.80 5.10 -21.31 -0.11 5.70 16 10 C -0.29 -14.54 7.17 22.75 0.16 -14.38 16 11 C -0.05 -1.97 10.01 22.20 0.22 -1.74 16 12 C -0.29 -11.35 9.32 22.59 0.21 -11.13 16 13 C 0.24 10.08 6.64 38.16 0.25 10.33 16 14 N -0.75 -24.49 5.72 -343.30 -1.96 -26.46 16 15 C 0.17 4.44 5.03 85.63 0.43 4.87 16 16 C -0.10 -2.33 5.25 -19.87 -0.10 -2.44 16 17 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 18 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 19 C -0.10 -1.90 5.51 -19.87 -0.11 -2.01 16 20 C 0.12 1.47 7.17 71.24 0.51 1.98 16 21 O -0.59 -9.08 13.64 -148.98 -2.03 -11.11 16 22 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 23 C -0.11 -2.38 9.70 22.27 0.22 -2.17 16 24 C -0.30 -14.66 9.63 22.86 0.22 -14.44 16 25 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 26 H 0.09 4.58 4.73 -2.91 -0.01 4.57 16 27 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.13 4.11 6.70 -2.91 -0.02 4.09 16 29 H 0.39 12.67 8.47 -92.71 -0.79 11.88 16 30 H 0.07 1.66 7.87 -2.39 -0.02 1.64 16 31 H 0.07 1.67 7.90 -2.39 -0.02 1.65 16 32 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.07 0.64 8.09 -2.38 -0.02 0.62 16 35 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 36 H 0.40 1.97 9.12 -74.06 -0.68 1.29 16 37 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -69.13 328.77 0.78 -68.35 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.45 Total: 28.27 kcal Atomic # 6 Polarization: -60.39 SS G_CDS: 3.24 Total: -57.16 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.66 Total: -75.26 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -2.03 Total: -11.11 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.68 Total: 46.91 kcal Total: -69.13 0.78 -68.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.180 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds