Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86809 * 120.00012 * 2 1 4 4 H 1.48500 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47032 * 299.99930 * 3 2 1 6 6 H 1.48501 * 109.47095 * 60.00099 * 3 2 1 7 7 C 1.39928 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00479 * 197.88871 * 7 2 1 9 9 C 1.41412 * 119.99329 * 17.89297 * 7 2 1 10 10 C 1.40787 * 120.20393 * 204.41437 * 9 7 2 11 11 C 1.37655 * 119.89170 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32383 * 359.73916 * 11 10 9 13 13 C 1.39295 * 120.42338 * 0.52020 * 12 11 10 14 14 N 1.39691 * 119.94953 * 179.76230 * 13 12 11 15 15 C 1.46503 * 119.99839 * 359.72091 * 14 13 12 16 16 C 1.53006 * 109.46659 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.47677 * 305.00101 * 16 15 14 18 18 O 1.42902 * 109.46800 * 65.00360 * 16 15 14 19 19 C 1.50701 * 109.46644 * 184.99665 * 16 15 14 20 20 C 1.38236 * 119.99680 * 100.00772 * 19 16 15 21 21 C 1.38231 * 119.99960 * 179.97438 * 20 19 16 22 22 C 1.38233 * 120.00177 * 359.97438 * 21 20 19 23 23 C 1.38236 * 119.99847 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00092 * 0.07317 * 23 22 21 25 25 C 1.38309 * 120.10056 * 359.48097 * 13 12 11 26 26 H 0.97001 * 119.99340 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.05311 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.83076 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.78775 * 180.27887 * 12 11 10 30 30 H 0.96998 * 119.99922 * 179.72398 * 14 13 12 31 31 H 1.08993 * 109.47078 * 60.00584 * 15 14 13 32 32 H 1.08998 * 109.46861 * 299.99921 * 15 14 13 33 33 H 0.96703 * 114.00776 * 59.99560 * 18 16 15 34 34 H 1.08001 * 119.99853 * 359.97156 * 20 19 16 35 35 H 1.08002 * 120.00261 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.00552 * 179.71862 * 22 21 20 37 37 H 1.08002 * 120.00096 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.00319 * 179.97438 * 24 23 22 39 39 H 1.07994 * 120.16719 * 180.23661 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8836 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0489 -1.2343 0.2878 9 6 1.3522 -2.4069 -0.3752 10 6 1.8262 -3.6499 0.0856 11 6 1.1832 -4.8094 -0.2846 12 6 0.0679 -4.7594 -1.1045 13 6 -0.4092 -3.5373 -1.5726 14 7 -1.5318 -3.4987 -2.4030 15 6 -2.2027 -4.7435 -2.7860 16 6 -3.3938 -4.4231 -3.6913 17 1 -4.0504 -3.7121 -3.1901 18 8 -2.9227 -3.8555 -4.9152 19 6 -4.1560 -5.6895 -3.9856 20 6 -5.3129 -5.9782 -3.2863 21 6 -6.0123 -7.1395 -3.5565 22 6 -5.5551 -8.0119 -4.5263 23 6 -4.3987 -7.7228 -5.2264 24 6 -3.6987 -6.5619 -4.9555 25 6 0.2233 -2.3615 -1.2115 26 1 -0.4849 0.8401 0.0004 27 1 2.6933 -3.6937 0.7278 28 1 1.5474 -5.7623 0.0699 29 1 -0.4326 -5.6741 -1.3860 30 1 -1.8671 -2.6478 -2.7261 31 1 -2.5547 -5.2567 -1.8912 32 1 -1.5016 -5.3845 -3.3205 33 1 -2.3316 -4.4346 -5.4156 34 1 -5.6704 -5.2963 -2.5288 35 1 -6.9160 -7.3652 -3.0098 36 1 -6.0990 -8.9215 -4.7343 37 1 -4.0412 -8.4046 -5.9838 38 1 -2.7951 -6.3362 -5.5021 39 1 -0.1480 -1.4131 -1.5707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313562817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -8.997561 kcal Electronic energy + Delta-G solvation = -20778.869811 eV Core-core repulsion = 17650.402696 eV Total energy + Delta-G solvation = -3128.467116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84609 -37.91547 -36.96515 -34.50766 -33.16608 -31.83328 -31.05753 -29.40193 -29.05139 -26.30014 -25.18697 -23.38342 -22.73553 -21.40333 -20.65037 -19.87220 -17.80733 -17.10360 -16.39982 -15.92209 -15.82378 -15.06248 -14.71866 -14.58790 -14.38685 -14.08426 -13.69212 -13.56273 -12.98667 -12.79129 -12.68090 -12.51546 -12.15313 -11.91976 -11.55743 -11.34078 -11.13125 -11.07608 -10.96096 -10.58073 -10.36685 -10.16299 -9.59530 -9.41935 -9.22675 -9.12187 -8.93116 -8.74265 -7.28217 -6.69900 -6.14184 -4.27975 1.11399 1.19925 2.88409 3.12709 3.18320 3.25629 3.36152 3.53915 4.00650 4.12063 4.39533 4.64255 4.73540 4.76214 4.80378 4.92946 5.02635 5.16749 5.31523 5.40418 5.74103 5.78651 5.84408 5.93023 6.00961 6.23906 6.29399 6.30032 6.41462 6.60043 6.77570 6.90209 7.13169 7.17074 7.40859 7.47227 7.51935 7.83790 7.98870 8.13294 8.20866 8.51987 8.74493 8.86974 9.04583 9.15075 10.28812 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.003319 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.145858 B = 8434.431820 C = 8958.502606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.138 3.862 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.301 4.301 13 C 0.216 3.784 14 N -0.756 5.756 15 C 0.115 3.885 16 C 0.136 3.864 17 H 0.111 0.889 18 O -0.550 6.550 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.230 4.230 26 H 0.277 0.723 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.394 0.606 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.374 0.626 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 -10.447 -8.856 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.135 3.865 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.324 4.324 13 C 0.117 3.883 14 N -0.390 5.390 15 C -0.011 4.011 16 C 0.077 3.923 17 H 0.129 0.871 18 O -0.355 6.355 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.254 4.254 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.228 0.772 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.222 0.778 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.080 -9.982 -8.649 17.239 hybrid contribution 0.455 0.448 -0.149 0.656 sum -10.625 -9.533 -8.798 16.768 Atomic orbital electron populations 1.69875 1.07508 1.28676 1.35671 1.25880 0.94672 1.01102 0.92333 0.86346 0.81087 0.81323 0.78415 1.18476 1.19823 1.20146 1.19580 0.98093 0.91289 1.40448 0.90557 1.17333 0.90091 0.91849 0.87210 1.20866 1.04865 0.92924 1.09112 1.20276 0.95120 0.96242 0.96873 1.19866 1.04563 0.94325 1.13638 1.17644 0.86301 0.94341 0.90022 1.44298 1.32049 1.06188 1.56496 1.21658 0.92890 0.88987 0.97605 1.21089 0.94037 0.91870 0.85300 0.87092 1.86631 1.68074 1.46228 1.34604 1.20499 0.96279 0.97054 0.97128 1.21055 0.94639 0.97521 0.99355 1.21153 0.99955 0.94531 0.98051 1.21174 0.96762 0.99512 0.96611 1.21117 0.95551 0.97065 0.99881 1.20911 0.99843 0.94306 0.97769 1.20724 1.02587 0.95053 1.07030 0.91247 0.89396 0.89689 0.89841 0.77243 0.92407 0.93026 0.77849 0.85725 0.85937 0.86121 0.85966 0.86099 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.89 10.96 55.55 0.61 -20.28 16 2 C 0.08 1.99 5.14 -17.35 -0.09 1.91 16 3 Si 0.90 19.11 29.60 -169.99 -5.03 14.08 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.46 -12.68 9.05 -37.74 -0.34 -13.02 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.14 3.81 5.57 -106.85 -0.60 3.22 16 10 C -0.26 -6.59 9.79 -38.83 -0.38 -6.97 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.95 16 12 C -0.30 -6.95 9.32 -39.09 -0.36 -7.32 16 13 C 0.22 5.10 6.64 -83.86 -0.56 4.54 16 14 N -0.76 -14.58 5.68 -58.68 -0.33 -14.92 16 15 C 0.11 1.76 4.52 -4.04 -0.02 1.74 16 16 C 0.14 1.73 3.24 -27.88 -0.09 1.64 16 17 H 0.11 1.42 8.00 -51.93 -0.42 1.01 16 18 O -0.55 -7.19 13.13 -35.23 -0.46 -7.65 16 19 C -0.11 -1.24 4.97 -104.62 -0.52 -1.76 16 20 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 21 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.11 -1.13 9.32 -39.58 -0.37 -1.50 16 25 C -0.23 -6.10 8.53 -38.68 -0.33 -6.43 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.08 1.74 6.70 -52.49 -0.35 1.39 16 30 H 0.39 7.48 8.48 -40.82 -0.35 7.13 16 31 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 32 H 0.05 0.79 7.95 -51.93 -0.41 0.37 16 33 H 0.37 3.78 7.50 45.56 0.34 4.12 16 34 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 1.04 6.79 -52.49 -0.36 0.68 16 39 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -30.10 330.65 -10.23 -40.33 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.36 Total: 15.41 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -5.63 Total: -31.95 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.28 Total: -35.20 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.46 Total: -7.65 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.10 -10.23 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313562817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.332 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds