Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00025 * 2 1 4 4 H 1.48502 * 109.47259 * 269.99960 * 3 2 1 5 5 H 1.48501 * 109.47310 * 30.00141 * 3 2 1 6 6 H 1.48498 * 109.46913 * 149.99961 * 3 2 1 7 7 C 1.37884 * 119.99555 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46782 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46782 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00015 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99903 * 180.02562 * 11 10 9 14 14 C 1.46405 * 119.67415 * 336.20684 * 13 11 10 15 15 C 1.53707 * 109.27697 * 115.13173 * 14 13 11 16 16 S 1.81746 * 108.79908 * 57.71911 * 15 14 13 17 17 C 1.81820 * 102.24545 * 305.31546 * 16 15 14 18 18 H 1.08995 * 110.27335 * 174.93208 * 17 16 15 19 19 C 1.53021 * 109.11031 * 295.44455 * 17 16 15 20 20 C 1.52964 * 109.57875 * 178.52794 * 19 17 16 21 21 C 1.53014 * 109.42869 * 299.79336 * 20 19 17 22 22 C 1.52988 * 109.37453 * 60.17519 * 21 20 19 23 23 C 1.46303 * 119.67535 * 156.48951 * 13 11 10 24 24 H 1.08998 * 109.35747 * 125.27982 * 23 13 11 25 25 H 0.96992 * 119.99659 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46979 * 59.99847 * 9 7 2 27 27 H 1.09002 * 109.46970 * 299.99925 * 9 7 2 28 28 H 1.08998 * 109.46866 * 299.99772 * 10 9 7 29 29 H 1.08997 * 109.46936 * 60.00193 * 10 9 7 30 30 H 1.09004 * 109.46260 * 235.15477 * 14 13 11 31 31 H 1.09003 * 109.46156 * 355.11376 * 14 13 11 32 32 H 1.09001 * 109.68235 * 297.87475 * 15 14 13 33 33 H 1.08993 * 109.61582 * 177.52597 * 15 14 13 34 34 H 1.08993 * 109.45494 * 298.56338 * 19 17 16 35 35 H 1.09003 * 109.45373 * 58.49808 * 19 17 16 36 36 H 1.08998 * 109.47839 * 59.78510 * 20 19 17 37 37 H 1.09005 * 109.48208 * 179.80934 * 20 19 17 38 38 H 1.08994 * 109.49091 * 180.14725 * 21 20 19 39 39 H 1.09001 * 109.48697 * 300.18491 * 21 20 19 40 40 H 1.09007 * 109.44667 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.44838 * 60.08085 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2789 -4.9672 -0.0024 13 7 2.1656 -6.1345 -0.0031 14 6 3.5359 -6.1800 -0.5164 15 6 4.4958 -6.5347 0.6305 16 16 3.9907 -8.1274 1.3456 17 6 2.2464 -7.8274 1.7618 18 1 1.7820 -8.7438 2.1257 19 6 2.1678 -6.7461 2.8417 20 6 0.7025 -6.4590 3.1739 21 6 -0.0181 -5.9696 1.9159 22 6 0.0556 -7.0506 0.8358 23 6 1.5182 -7.3448 0.5034 24 1 1.5599 -8.1228 -0.2589 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8712 -3.6040 -0.8923 29 1 2.8726 -3.6048 0.8877 30 1 3.6059 -6.9359 -1.2986 31 1 3.8022 -5.2063 -0.9278 32 1 4.4542 -5.7607 1.3968 33 1 5.5125 -6.6132 0.2457 34 1 2.6826 -7.0906 3.7385 35 1 2.6429 -5.8348 2.4782 36 1 0.2262 -7.3707 3.5343 37 1 0.6485 -5.6910 3.9456 38 1 -1.0617 -5.7622 2.1521 39 1 0.4604 -5.0598 1.5534 40 1 -0.4579 -6.7034 -0.0608 41 1 -0.4240 -7.9596 1.1988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -1.666257 kcal Electronic energy + Delta-G solvation = -21804.385383 eV Core-core repulsion = 18811.680128 eV Total energy + Delta-G solvation = -2992.705255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16877 -37.18165 -35.70141 -33.55378 -31.56407 -30.86730 -30.42807 -29.17009 -25.73879 -23.66650 -23.00647 -22.56649 -21.58192 -19.85944 -18.43720 -17.16048 -16.51250 -15.91850 -15.74614 -15.67652 -15.12201 -14.72086 -14.45799 -13.73738 -13.49380 -13.35187 -13.24661 -12.84886 -12.71551 -12.43405 -12.22278 -12.02199 -11.96884 -11.59692 -11.19312 -11.07478 -10.95722 -10.64160 -10.47380 -10.24996 -10.12978 -9.76937 -9.63367 -9.42226 -9.15762 -8.75395 -8.37134 -8.30363 -7.72864 -6.01030 -4.05492 1.63676 2.36598 2.92269 3.13536 3.30005 3.36750 3.38879 4.42667 4.50760 4.61697 4.74902 4.86912 4.98432 5.14334 5.18653 5.29583 5.33431 5.34448 5.43200 5.48462 5.53981 5.59703 5.67584 5.74203 5.95812 6.05365 6.10378 6.12771 6.17492 6.29350 6.47260 6.54987 6.78822 6.86413 6.90297 7.61874 7.67958 7.78145 8.00077 8.32018 8.54768 9.02261 9.58539 11.09780 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.005045 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.529480 B = 5548.704152 C = 6068.306651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.134 4.134 11 C 0.504 3.496 12 O -0.487 6.487 13 N -0.630 5.630 14 C 0.115 3.885 15 C -0.100 4.100 16 S -0.272 6.272 17 C -0.056 4.056 18 H 0.114 0.886 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.152 4.152 22 C -0.106 4.106 23 C 0.156 3.844 24 H 0.076 0.924 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.659 -16.440 2.427 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.173 4.173 11 C 0.296 3.704 12 O -0.362 6.362 13 N -0.367 5.367 14 C -0.010 4.010 15 C -0.250 4.250 16 S -0.041 6.041 17 C -0.185 4.185 18 H 0.132 0.868 19 C -0.148 4.148 20 C -0.161 4.161 21 C -0.188 4.188 22 C -0.145 4.145 23 C 0.051 3.949 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.510 -17.273 2.565 18.637 hybrid contribution -0.048 1.815 -0.013 1.815 sum 6.462 -15.459 2.552 16.948 Atomic orbital electron populations 1.69988 1.06039 1.26635 1.50084 1.25008 0.94807 0.99197 0.95227 0.86611 0.79804 0.83562 0.78104 1.20645 1.21199 1.19896 1.21189 0.92879 0.90983 1.51546 0.92693 1.18907 0.93107 0.89419 0.98522 1.22005 1.00864 0.92261 1.02220 1.21247 0.88186 0.85490 0.75487 1.90651 1.14811 1.87385 1.43402 1.47830 1.14544 1.08640 1.65672 1.21799 0.80609 1.04031 0.94589 1.23980 1.02640 0.96936 1.01410 1.86709 1.14279 1.22016 1.81142 1.23703 0.93020 1.02706 0.99101 0.86848 1.21755 0.97937 0.97884 0.97185 1.21681 0.94680 1.00680 0.99021 1.22762 1.01601 1.01542 0.92925 1.21859 0.93062 0.98053 1.01526 1.21096 0.93407 0.87231 0.93197 0.90642 0.92923 0.95819 0.95871 0.90346 0.90410 0.90265 0.88068 0.89096 0.86967 0.91406 0.91500 0.92805 0.91905 0.92374 0.86468 0.88653 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.69 5.46 -17.81 -0.10 1.59 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.54 4.62 -27.88 -0.13 -2.67 16 11 C 0.50 8.83 5.40 -10.98 -0.06 8.77 16 12 O -0.49 -9.93 9.83 5.56 0.05 -9.87 16 13 N -0.63 -8.66 2.09 -165.87 -0.35 -9.01 16 14 C 0.11 1.26 6.05 -3.73 -0.02 1.23 16 15 C -0.10 -1.02 6.24 37.52 0.23 -0.78 16 16 S -0.27 -3.09 21.71 -107.50 -2.33 -5.42 16 17 C -0.06 -0.65 2.81 -26.62 -0.07 -0.72 16 18 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.11 -1.35 4.94 -26.74 -0.13 -1.48 16 20 C -0.12 -1.59 5.92 -26.74 -0.16 -1.75 16 21 C -0.15 -2.39 4.66 -26.73 -0.12 -2.52 16 22 C -0.11 -1.50 4.88 -26.81 -0.13 -1.63 16 23 C 0.16 2.00 2.88 -68.02 -0.20 1.80 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.08 1.36 6.83 -51.93 -0.35 1.01 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.07 5.93 -51.93 -0.31 0.76 16 32 H 0.09 0.99 7.24 -51.93 -0.38 0.62 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 6.27 -51.93 -0.33 0.61 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 2.22 3.73 -57.22 -0.21 2.01 16 40 H 0.10 1.56 6.38 -51.93 -0.33 1.23 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -30.36 315.05 -10.00 -40.36 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.52 Total: 1.07 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.32 Total: -12.10 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.39 Total: -35.02 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.05 Total: -9.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.33 Total: -5.42 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.36 -10.00 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.695 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds