Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48511 * 109.46831 * 240.00465 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46890 * 120.00915 * 3 2 1 7 7 C 1.37875 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00478 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46742 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99885 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99552 * 180.02562 * 11 10 9 14 14 C 1.46488 * 119.73557 * 23.00475 * 13 11 10 15 15 C 1.53230 * 109.20708 * 245.07818 * 14 13 11 16 16 S 1.81746 * 108.84481 * 302.26514 * 15 14 13 17 17 C 1.81826 * 102.23969 * 54.57665 * 16 15 14 18 18 H 1.08998 * 110.28554 * 185.04635 * 17 16 15 19 19 C 1.53028 * 109.10025 * 64.53001 * 17 16 15 20 20 C 1.52966 * 109.58045 * 181.48064 * 19 17 16 21 21 C 1.53014 * 109.43202 * 60.19838 * 20 19 17 22 22 C 1.52988 * 109.37578 * 299.83439 * 21 20 19 23 23 C 1.46314 * 119.67054 * 202.47904 * 13 11 10 24 24 H 1.09000 * 109.35563 * 234.29373 * 23 13 11 25 25 H 0.96999 * 120.00470 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46758 * 59.99657 * 9 7 2 27 27 H 1.09003 * 109.46602 * 300.00233 * 9 7 2 28 28 H 1.08999 * 109.46839 * 60.00295 * 10 9 7 29 29 H 1.08994 * 109.47063 * 299.99878 * 10 9 7 30 30 H 1.08995 * 109.78162 * 125.06860 * 14 13 11 31 31 H 1.08995 * 109.45640 * 4.89337 * 14 13 11 32 32 H 1.09000 * 109.57326 * 182.45297 * 15 14 13 33 33 H 1.09005 * 109.68336 * 62.13674 * 15 14 13 34 34 H 1.08998 * 109.45908 * 61.44176 * 19 17 16 35 35 H 1.09009 * 109.45271 * 301.51074 * 19 17 16 36 36 H 1.08997 * 109.48048 * 180.18591 * 20 19 17 37 37 H 1.08993 * 109.47646 * 300.21179 * 20 19 17 38 38 H 1.09002 * 109.48675 * 59.79888 * 21 20 19 39 39 H 1.09001 * 109.49057 * 179.84250 * 21 20 19 40 40 H 1.08998 * 109.45254 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.44952 * 299.92735 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2127 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0003 13 7 2.1656 -6.1344 -0.0016 14 6 3.5433 -6.1781 0.4945 15 6 4.4842 -6.5345 -0.6612 16 16 3.9707 -8.1291 -1.3659 17 6 2.2197 -7.8323 -1.7557 18 1 1.7509 -8.7498 -2.1114 19 6 2.1231 -6.7524 -2.8356 20 6 0.6526 -6.4676 -3.1458 21 6 -0.0496 -5.9779 -1.8776 22 6 0.0422 -7.0575 -0.7975 23 6 1.5102 -7.3490 -0.4871 24 1 1.5710 -8.1229 0.2781 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8712 -3.6039 -0.8922 30 1 3.6294 -6.9307 1.2781 31 1 3.8155 -5.2023 0.8966 32 1 5.5060 -6.6114 -0.2897 33 1 4.4318 -5.7623 -1.4287 34 1 2.6247 -7.0973 -3.7398 35 1 2.6025 -5.8401 -2.4805 36 1 0.5858 -5.7007 -3.9174 37 1 0.1721 -7.3804 -3.4978 38 1 0.4333 -5.0671 -1.5232 39 1 -1.0970 -5.7719 -2.0982 40 1 -0.4581 -6.7100 0.1064 41 1 -0.4415 -7.9677 -1.1521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = 2.843763 kcal Electronic energy + Delta-G solvation = -21812.725583 eV Core-core repulsion = 18820.215897 eV Total energy + Delta-G solvation = -2992.509686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21376 -37.18142 -35.73258 -33.55261 -31.56820 -30.88471 -30.41471 -29.17328 -25.73439 -23.65521 -23.00240 -22.56299 -21.59287 -19.86872 -18.43436 -17.17549 -16.51121 -15.92712 -15.77054 -15.67536 -15.11304 -14.73776 -14.46148 -13.74386 -13.48756 -13.34740 -13.25250 -12.84565 -12.71806 -12.44118 -12.21900 -12.02229 -11.97769 -11.59199 -11.19512 -11.06721 -10.94134 -10.66252 -10.46355 -10.24143 -10.12288 -9.76411 -9.63021 -9.38973 -9.16542 -8.75685 -8.36613 -8.25461 -7.72287 -6.00745 -4.05366 1.63818 2.36714 2.92426 3.13124 3.31185 3.36542 3.37857 4.42767 4.51507 4.62414 4.76317 4.86822 4.98650 5.14011 5.19113 5.30157 5.33603 5.34621 5.43892 5.48853 5.54433 5.60409 5.67730 5.74549 5.96525 6.05996 6.10669 6.12777 6.18300 6.30119 6.47920 6.55271 6.78809 6.86355 6.93008 7.61729 7.67654 7.78168 8.00104 8.31989 8.54066 9.02131 9.58634 11.10001 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.005048 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.906933 B = 5545.698419 C = 6071.552842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.038 3.962 10 C -0.133 4.133 11 C 0.500 3.500 12 O -0.484 6.484 13 N -0.629 5.629 14 C 0.115 3.885 15 C -0.100 4.100 16 S -0.272 6.272 17 C -0.056 4.056 18 H 0.113 0.887 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.156 4.156 22 C -0.104 4.104 23 C 0.156 3.844 24 H 0.076 0.924 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.606 -16.406 -2.374 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.173 4.173 11 C 0.292 3.708 12 O -0.359 6.359 13 N -0.366 5.366 14 C -0.010 4.010 15 C -0.250 4.250 16 S -0.042 6.042 17 C -0.185 4.185 18 H 0.131 0.869 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.192 4.192 22 C -0.143 4.143 23 C 0.050 3.950 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.455 -17.236 -2.517 18.577 hybrid contribution -0.042 1.798 0.008 1.799 sum 6.413 -15.438 -2.509 16.905 Atomic orbital electron populations 1.69975 1.06036 1.26757 1.49986 1.25002 0.94806 0.99179 0.95213 0.86672 0.79590 0.83235 0.78567 1.20249 1.21252 1.20239 1.21152 0.92842 0.90996 1.51686 0.92746 1.18902 0.93106 0.89413 0.98512 1.21994 1.00857 0.92235 1.02207 1.21222 0.88157 0.85507 0.75936 1.90640 1.14845 1.87425 1.42999 1.47844 1.13913 1.08404 1.66427 1.21717 0.80526 1.04056 0.94742 1.23905 1.02708 0.96932 1.01422 1.86710 1.13557 1.21914 1.81993 1.23711 0.92956 1.02713 0.99168 0.86880 1.21757 0.97919 0.97892 0.97177 1.21686 0.94663 1.00644 0.99090 1.22906 1.01795 1.01849 0.92677 1.21833 0.92873 0.98033 1.01548 1.21127 0.93441 0.87106 0.93278 0.90597 0.92861 0.95890 0.95811 0.90344 0.90436 0.90229 0.88062 0.86970 0.89096 0.91434 0.91498 0.91931 0.92867 0.85901 0.92425 0.88817 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.53 4.60 -27.88 -0.13 -2.66 16 11 C 0.50 8.74 5.42 -10.98 -0.06 8.68 16 12 O -0.48 -9.82 9.70 5.56 0.05 -9.76 16 13 N -0.63 -8.63 2.05 -166.10 -0.34 -8.97 16 14 C 0.11 1.25 6.04 -3.93 -0.02 1.23 16 15 C -0.10 -1.02 6.21 37.28 0.23 -0.79 16 16 S -0.27 -3.10 21.71 -107.50 -2.33 -5.43 16 17 C -0.06 -0.65 2.81 -26.63 -0.07 -0.72 16 18 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 19 C -0.11 -1.35 4.93 -26.73 -0.13 -1.48 16 20 C -0.12 -1.60 5.92 -26.74 -0.16 -1.76 16 21 C -0.16 -2.46 4.63 -26.73 -0.12 -2.59 16 22 C -0.10 -1.47 4.88 -26.81 -0.13 -1.60 16 23 C 0.16 1.99 2.91 -68.02 -0.20 1.80 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.08 1.36 6.85 -51.93 -0.36 1.01 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.07 5.92 -51.93 -0.31 0.76 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.99 7.24 -51.93 -0.38 0.62 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 6.21 -51.92 -0.32 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.12 2.34 3.65 -57.89 -0.21 2.12 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.53 6.44 -51.93 -0.33 1.20 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -30.27 314.76 -10.01 -40.27 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.52 Total: 1.18 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.33 Total: -12.25 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.40 Total: -34.98 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.05 Total: -9.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.33 Total: -5.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.27 -10.01 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.115 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds