Wall clock time and date at job start Tue Mar 31 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00545 * 2 1 4 4 H 1.48491 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46829 * 300.00251 * 3 2 1 6 6 H 1.48499 * 109.46854 * 59.99903 * 3 2 1 7 7 C 1.37878 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47143 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00023 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00430 * 180.02562 * 11 10 9 14 14 C 1.46473 * 119.76826 * 354.62932 * 13 11 10 15 15 C 1.53199 * 109.67674 * 244.86595 * 14 13 11 16 16 S 1.82511 * 108.81576 * 302.47126 * 15 14 13 17 17 C 1.81649 * 101.88121 * 54.62742 * 16 15 14 18 18 H 1.08999 * 109.96995 * 64.89605 * 17 16 15 19 19 C 1.52912 * 109.76315 * 185.54238 * 17 16 15 20 20 C 1.53078 * 109.22157 * 179.69498 * 19 17 16 21 21 C 1.52945 * 109.68034 * 300.18991 * 20 19 17 22 22 C 1.53074 * 109.69301 * 59.45708 * 21 20 19 23 23 C 1.46229 * 119.77700 * 174.65035 * 13 11 10 24 24 H 1.09005 * 109.38799 * 234.48675 * 23 13 11 25 25 H 0.97006 * 119.99622 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47041 * 59.99941 * 9 7 2 27 27 H 1.08992 * 109.46688 * 299.99709 * 9 7 2 28 28 H 1.09003 * 109.46698 * 59.99723 * 10 9 7 29 29 H 1.09003 * 109.46899 * 299.99715 * 10 9 7 30 30 H 1.08999 * 109.43589 * 4.92996 * 14 13 11 31 31 H 1.09000 * 109.43730 * 124.84117 * 14 13 11 32 32 H 1.09009 * 109.56365 * 62.45676 * 15 14 13 33 33 H 1.09000 * 109.56697 * 182.79810 * 15 14 13 34 34 H 1.09005 * 109.51144 * 299.61707 * 19 17 16 35 35 H 1.08999 * 109.51458 * 59.77354 * 19 17 16 36 36 H 1.09008 * 109.43290 * 60.24749 * 20 19 17 37 37 H 1.08993 * 109.43925 * 180.12309 * 20 19 17 38 38 H 1.09003 * 109.43464 * 299.38963 * 21 20 19 39 39 H 1.08996 * 109.40135 * 179.50593 * 21 20 19 40 40 H 1.08995 * 109.51205 * 180.30286 * 22 21 20 41 41 H 1.09004 * 109.51175 * 60.15766 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2787 -4.9672 0.0000 13 7 2.1653 -6.1345 0.0003 14 6 3.6253 -6.1315 -0.1176 15 6 4.0381 -6.8035 -1.4310 16 16 3.3616 -8.4983 -1.4631 17 6 1.5928 -8.2005 -1.1759 18 1 1.1695 -7.6403 -2.0096 19 6 0.8607 -9.5351 -1.0305 20 6 -0.6262 -9.2697 -0.7816 21 6 -0.7957 -8.4482 0.4973 22 6 -0.0505 -7.1183 0.3587 23 6 1.4338 -7.3952 0.1180 24 1 1.8347 -7.9695 0.9532 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8717 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8895 30 1 3.9880 -5.1037 -0.1064 31 1 4.0580 -6.6779 0.7204 32 1 3.6435 -6.2336 -2.2724 33 1 5.1255 -6.8448 -1.4939 34 1 0.9787 -10.1166 -1.9449 35 1 1.2774 -10.0892 -0.1894 36 1 -1.0423 -8.7182 -1.6248 37 1 -1.1512 -10.2189 -0.6752 38 1 -0.3903 -9.0047 1.3423 39 1 -1.8551 -8.2544 0.6654 40 1 -0.1687 -6.5376 1.2734 41 1 -0.4576 -6.5589 -0.4836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:30 Heat of formation + Delta-G solvation = -41.755888 kcal Electronic energy + Delta-G solvation = -21043.504378 eV Core-core repulsion = 18049.060706 eV Total energy + Delta-G solvation = -2994.443672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45997 -37.67938 -35.74626 -33.58427 -31.53006 -30.83897 -30.79683 -29.14635 -25.71909 -23.52710 -23.14168 -22.75466 -21.14619 -20.11755 -18.68583 -16.98737 -16.59842 -16.09389 -15.68623 -15.44681 -15.03737 -14.47201 -14.44963 -14.15856 -13.77393 -13.34535 -13.26255 -12.99487 -12.58789 -12.39491 -12.21508 -12.10324 -11.91402 -11.54174 -11.42576 -11.15951 -10.97962 -10.88170 -10.61711 -10.51738 -10.35760 -10.01214 -9.83590 -9.59147 -9.13215 -8.66912 -8.50935 -8.36079 -7.77041 -5.99985 -4.04464 1.57561 2.34418 3.05651 3.09725 3.29944 3.37437 3.40336 4.42697 4.44764 4.58760 4.72904 4.73554 4.88450 5.02247 5.07169 5.09838 5.22632 5.29684 5.35384 5.42412 5.43636 5.51266 5.64312 5.67486 5.75156 5.85816 5.94835 6.05851 6.11656 6.13327 6.14127 6.39088 6.51676 6.81258 6.85827 7.61001 7.70082 7.80657 8.02172 8.33990 8.65028 9.03797 9.59504 11.10939 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.004291 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.708946 B = 6523.153771 C = 7391.185997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.132 4.132 11 C 0.512 3.488 12 O -0.518 6.518 13 N -0.628 5.628 14 C 0.108 3.892 15 C -0.096 4.096 16 S -0.275 6.275 17 C -0.058 4.058 18 H 0.091 0.909 19 C -0.095 4.095 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.107 4.107 23 C 0.154 3.846 24 H 0.077 0.923 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -19.271 -0.982 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.302 3.698 12 O -0.393 6.393 13 N -0.363 5.363 14 C -0.017 4.017 15 C -0.245 4.245 16 S -0.045 6.045 17 C -0.188 4.188 18 H 0.109 0.891 19 C -0.134 4.134 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.146 4.146 23 C 0.048 3.952 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.191 -20.110 -1.164 20.802 hybrid contribution 0.095 1.996 0.049 1.999 sum 5.286 -18.114 -1.115 18.903 Atomic orbital electron populations 1.70005 1.06061 1.26504 1.50200 1.25016 0.94811 0.99229 0.95248 0.86546 0.80016 0.83852 0.77624 1.19741 1.20999 1.20988 1.21240 0.92926 0.90983 1.51400 0.92605 1.18902 0.93120 0.89346 0.98580 1.21950 1.00843 0.92132 1.02217 1.21636 0.88630 0.85398 0.74091 1.90694 1.14106 1.86650 1.47864 1.48196 1.06607 1.06151 1.75337 1.21757 0.80728 1.03179 0.96066 1.23957 1.04136 0.94731 1.01691 1.86852 1.08227 1.13793 1.95639 1.23708 0.92781 1.00562 1.01709 0.89069 1.21337 0.95185 0.94188 1.02691 1.21552 0.94850 1.00206 0.98784 1.21776 1.01026 0.96819 0.97133 1.22187 0.91488 0.95443 1.05442 1.21274 0.94322 0.84440 0.95119 0.90481 0.92984 0.95884 0.95795 0.90183 0.90407 0.87659 0.90247 0.89279 0.86750 0.91066 0.90967 0.91653 0.91586 0.92435 0.91458 0.90635 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.58 3.96 -27.88 -0.11 -2.69 16 11 C 0.51 9.46 7.52 -10.99 -0.08 9.38 16 12 O -0.52 -11.21 11.35 5.55 0.06 -11.14 16 13 N -0.63 -9.04 2.79 -166.13 -0.46 -9.50 16 14 C 0.11 1.21 6.13 -3.95 -0.02 1.19 16 15 C -0.10 -1.00 6.69 37.26 0.25 -0.75 16 16 S -0.27 -3.19 21.72 -107.50 -2.34 -5.52 16 17 C -0.06 -0.69 2.56 -26.65 -0.07 -0.76 16 18 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.09 -0.94 5.25 -26.74 -0.14 -1.08 16 20 C -0.11 -1.11 5.92 -26.72 -0.16 -1.27 16 21 C -0.13 -1.43 5.91 -26.72 -0.16 -1.59 16 22 C -0.11 -1.53 3.61 -26.75 -0.10 -1.63 16 23 C 0.15 2.03 2.52 -68.01 -0.17 1.86 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 29 H 0.08 1.40 7.64 -51.93 -0.40 1.00 16 30 H 0.11 1.14 5.75 -51.93 -0.30 0.84 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.25 7.20 -51.93 -0.37 0.87 16 41 H 0.10 1.70 6.21 -51.93 -0.32 1.38 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -31.53 325.43 -10.24 -41.77 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.84 Total: -0.69 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.29 Total: -9.86 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.27 Total: -35.84 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.06 Total: -11.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.34 Total: -5.52 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.53 -10.24 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.014 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds