Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99664 * 2 1 4 4 H 1.48495 * 109.47383 * 240.00104 * 3 2 1 5 5 H 1.48502 * 109.47510 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 120.00703 * 3 2 1 7 7 C 1.37881 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99615 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46682 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47134 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99824 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00286 * 179.97438 * 11 10 9 14 14 C 1.46473 * 119.77531 * 354.55600 * 13 11 10 15 15 C 1.53205 * 109.67635 * 115.15042 * 14 13 11 16 16 S 1.83047 * 109.11879 * 57.33122 * 15 14 13 17 17 C 1.81657 * 101.69538 * 305.89372 * 16 15 14 18 18 H 1.08994 * 109.60129 * 294.61425 * 17 16 15 19 19 C 1.52916 * 109.75840 * 174.20388 * 17 16 15 20 20 C 1.53072 * 109.22712 * 179.85876 * 19 17 16 21 21 C 1.52962 * 109.67887 * 59.81502 * 20 19 17 22 22 C 1.53073 * 109.68157 * 300.53526 * 21 20 19 23 23 C 1.46232 * 119.77787 * 174.57595 * 13 11 10 24 24 H 1.09003 * 109.12229 * 125.67111 * 23 13 11 25 25 H 0.97000 * 120.00515 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47332 * 60.00438 * 9 7 2 27 27 H 1.09002 * 109.47617 * 299.99880 * 9 7 2 28 28 H 1.08996 * 109.47579 * 59.99880 * 10 9 7 29 29 H 1.09003 * 109.47149 * 299.99446 * 10 9 7 30 30 H 1.08998 * 109.43893 * 235.21516 * 14 13 11 31 31 H 1.08996 * 109.43760 * 355.13329 * 14 13 11 32 32 H 1.08997 * 109.56569 * 177.20388 * 15 14 13 33 33 H 1.09002 * 109.56578 * 297.43346 * 15 14 13 34 34 H 1.08998 * 109.51292 * 299.78341 * 19 17 16 35 35 H 1.09002 * 109.51303 * 59.88521 * 19 17 16 36 36 H 1.08991 * 109.44216 * 179.87957 * 20 19 17 37 37 H 1.09003 * 109.43687 * 299.75944 * 20 19 17 38 38 H 1.09003 * 109.43204 * 60.59975 * 21 20 19 39 39 H 1.09001 * 109.43493 * 180.47056 * 21 20 19 40 40 H 1.09006 * 109.51201 * 179.70978 * 22 21 20 41 41 H 1.09007 * 109.51093 * 299.79837 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4920 -4.9671 0.0001 12 8 0.2792 -4.9672 0.0000 13 7 2.1658 -6.1343 -0.0003 14 6 3.6255 -6.1314 -0.1220 15 6 4.2514 -6.6807 1.1639 16 16 3.6012 -8.3631 1.4760 17 6 1.8077 -8.0771 1.4409 18 1 1.5230 -7.4372 2.2760 19 6 1.0692 -9.4123 1.5428 20 6 -0.4399 -9.1570 1.5157 21 6 -0.8205 -8.4574 0.2099 22 6 -0.0703 -7.1276 0.0997 23 6 1.4348 -7.3950 0.1203 24 1 1.7049 -8.0454 -0.7117 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 3.9205 -6.7565 -0.9648 31 1 3.9737 -5.1118 -0.2872 32 1 5.3348 -6.7242 1.0529 33 1 3.9961 -6.0306 2.0008 34 1 1.3463 -10.0468 0.7010 35 1 1.3387 -9.9071 2.4759 36 1 -0.9698 -10.1068 1.5861 37 1 -0.7160 -8.5249 2.3597 38 1 -0.5550 -9.0946 -0.6337 39 1 -1.8943 -8.2701 0.1984 40 1 -0.3397 -6.6339 -0.8340 41 1 -0.3385 -6.4876 0.9404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -41.528236 kcal Electronic energy + Delta-G solvation = -21053.314155 eV Core-core repulsion = 18058.880355 eV Total energy + Delta-G solvation = -2994.433800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46500 -37.68123 -35.74615 -33.58568 -31.53758 -30.82032 -30.77858 -29.14285 -25.72377 -23.52801 -23.14232 -22.75429 -21.13469 -20.11322 -18.70602 -16.93544 -16.60367 -16.10925 -15.71573 -15.47034 -14.99136 -14.48193 -14.45281 -14.06607 -13.78686 -13.40775 -13.29060 -13.00507 -12.53772 -12.35959 -12.21007 -12.10281 -11.97394 -11.55002 -11.36020 -11.16380 -10.94582 -10.88940 -10.65078 -10.51280 -10.38530 -9.99827 -9.84928 -9.58907 -9.15834 -8.68105 -8.48466 -8.35182 -7.77720 -5.99426 -4.04154 1.57664 2.33209 3.04737 3.10993 3.31925 3.37091 3.38486 4.42956 4.44876 4.58468 4.72491 4.73781 4.88696 5.01871 5.06775 5.10572 5.22009 5.29431 5.35616 5.42026 5.43103 5.51446 5.64119 5.67539 5.75374 5.85634 5.94749 6.05903 6.11465 6.13277 6.14168 6.42698 6.51174 6.80467 6.84507 7.60675 7.69587 7.80806 8.02426 8.34123 8.64479 9.03661 9.59650 11.11392 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.004332 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.437343 B = 6461.322761 C = 7320.160083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.132 4.132 11 C 0.511 3.489 12 O -0.517 6.517 13 N -0.628 5.628 14 C 0.108 3.892 15 C -0.094 4.094 16 S -0.277 6.277 17 C -0.058 4.058 18 H 0.090 0.910 19 C -0.095 4.095 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.100 4.100 23 C 0.154 3.846 24 H 0.077 0.923 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -19.108 1.485 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.301 3.699 12 O -0.392 6.392 13 N -0.363 5.363 14 C -0.017 4.017 15 C -0.243 4.243 16 S -0.048 6.048 17 C -0.188 4.188 18 H 0.108 0.892 19 C -0.134 4.134 20 C -0.154 4.154 21 C -0.169 4.169 22 C -0.139 4.139 23 C 0.049 3.951 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.387 -19.928 1.670 20.711 hybrid contribution 0.117 1.977 -0.052 1.981 sum 5.504 -17.951 1.618 18.845 Atomic orbital electron populations 1.69978 1.06058 1.26743 1.49994 1.25010 0.94811 0.99198 0.95226 0.86662 0.79573 0.83200 0.78556 1.20228 1.21251 1.20256 1.21161 0.92844 0.91009 1.51683 0.92720 1.18890 0.93103 0.89313 0.98567 1.21953 1.00843 0.92164 1.02173 1.21622 0.88639 0.85390 0.74205 1.90719 1.14102 1.86706 1.47705 1.48198 1.06608 1.06204 1.75312 1.21752 0.80033 1.03753 0.96128 1.24014 1.03518 0.95059 1.01710 1.86954 1.06461 1.16097 1.95261 1.23710 0.92256 1.01033 1.01782 0.89150 1.21334 0.94927 0.94236 1.02893 1.21558 0.94401 1.00687 0.98789 1.21813 1.00727 0.97375 0.96999 1.22122 0.90716 0.95279 1.05757 1.21285 0.93783 0.85061 0.95015 0.90498 0.92864 0.95803 0.95898 0.90397 0.90263 0.90241 0.87658 0.86813 0.89239 0.90962 0.91070 0.91594 0.91692 0.92357 0.91453 0.89753 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.13 -2.58 3.99 -27.88 -0.11 -2.69 16 11 C 0.51 9.44 7.58 -10.99 -0.08 9.36 16 12 O -0.52 -11.18 11.22 5.56 0.06 -11.12 16 13 N -0.63 -9.03 2.79 -166.13 -0.46 -9.50 16 14 C 0.11 1.22 6.13 -3.95 -0.02 1.19 16 15 C -0.09 -0.97 6.70 37.26 0.25 -0.72 16 16 S -0.28 -3.21 21.79 -107.50 -2.34 -5.56 16 17 C -0.06 -0.69 2.54 -26.65 -0.07 -0.76 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.09 -0.94 5.24 -26.74 -0.14 -1.08 16 20 C -0.12 -1.12 5.92 -26.71 -0.16 -1.27 16 21 C -0.13 -1.44 5.92 -26.71 -0.16 -1.60 16 22 C -0.10 -1.43 3.58 -26.75 -0.10 -1.53 16 23 C 0.15 2.03 2.53 -68.01 -0.17 1.85 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 29 H 0.08 1.42 7.44 -51.93 -0.39 1.03 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.11 1.13 5.78 -51.93 -0.30 0.83 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.40 6.86 -51.93 -0.36 1.05 16 41 H 0.09 1.49 6.56 -51.93 -0.34 1.15 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -31.48 325.42 -10.25 -41.73 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.84 Total: -0.73 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.29 Total: -9.78 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.27 Total: -35.84 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.34 Total: -5.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.48 -10.25 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.201 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds